|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061328 ID=TCONS_00061328|Name=TCONS_00061328|organism=Clytia hemisphaerica|type=transcript|length=1252bp
TTAAACTTGTAAACAAAAGGTGTTGGACTTTTTATTAATACGATAACACA
GAATCTTGCCATTATGGTggggttttaatttttttttgaaacgtgTAAAT
AGAAATCTTGAGGTCATCAATATCAAGGTTTTTGTACATCttgattattt
taaaattgttgCGTGTTTTAGGTTCTAAATTGGTTTTTGTTTAAGCGATA
ATAGACTTAACTAGAATGGGCTGTTCCAGAAATAGCCTGTACCCCCTATG
GTGAGGaagtgtgacgtccagggtggtctggaaaatgagaaatccagggt
ggtcagtatcacgaggtcgaaaatccatAGTGGTCCAATAAAgtgggaga
aaaaaatccatggggtcctgaaaaattagaaaaaaatccagggggtgtca
ccttttaaaaaagatctcctcaacatagggggtacaaattttttcaGGAA
TTGCCCAATATTTCACTTTGCAATTATATAGATAAGGTTATTTGTACTAA
CTTAAACTCCGCTTAAACTTTGAAACACTCTAATGGTTGCATTGAAATTT
Ggacgaaatttgaattttcgaacttttaattttcttgttttcgatttttt
tttcgggGGGTAGGGGtaaataatcctttttcataCCGTAGGAATGTTGA
GGGAAATATGGCGTTgtgaaaattttgtaatttcacTTATTCGTTGAACT
TACGTGGATAAcaagatacacgtttttattatatgaacaaactgtataag
aacagAAGACTTctatgaccaaaatattaagaacaagttaagaactctaa
aacacccccttttttaagaaattgcacaaaaatactcacaaaatggtaaa
aataagaatattttaaggacATTCTTAGGCTTAAAGTATTTTATTGCACG
TTTTCGAGTTTGCAAAGCCATAAAAAGatctttgaatgttcttaagatTC
TTTGGGTCCGAAGTCTTTGTTCTGATgtactttttttataaagaagcGTA
ATTGTGTCTTTAAAATCGAGCATACAAGAATGGCAGTATTCTATTAAAGT
AGTATTagtagtttttttaaatattttatacGTATATATGAACAAGAAAA
AGGAAATAATTGGTTTTactgtcaaaaaatattcttgttATATAATAAAC
CCGAATAAACATTGATgcttttttacataattttaaacCTAGCTTTGGTC
TTTCTTTAACCGTTGTactatggaggtataaagaaaaacaggagttgaat
tt Run BLAST on NCBI transcript from alignment at scaffold_355:244384..245635 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061328 ID=TCONS_00061328|Name=TCONS_00061328|organism=Clytia hemisphaerica|type=transcript|length=1252bp|location=Sequence derived from alignment at scaffold_355:244384..245635 (Clytia hemisphaerica)
aaattcaactcctgtttttctttatacctccatagtACAACGGTTAAAGA
AAGACCAAAGCTAGgtttaaaattatgtaaaaaagcATCAATGTTTATTC
GGGTTTATTATATaacaagaatattttttgacagtAAAACCAATTATTTC
CTTTTTCTTGTTCATATATACgtataaaatatttaaaaaaactactAATA
CTACTTTAATAGAATACTGCCATTCTTGTATGCTCGATTTTAAAGACACA
ATTACgcttctttataaaaaaagtacATCAGAACAAAGACTTCGGACCCA
AAGAatcttaagaacattcaaagatCTTTTTATGGCTTTGCAAACTCGAA
AACGTGCAATAAAATACTTTAAGCCTAAGAATgtccttaaaatattctta
tttttaccattttgtgagtatttttgtgcaatttcttaaaaaagggggtg
ttttagagttcttaacttgttcttaatattttggtcatagAAGTCTTctg
ttcttatacagtttgttcatataataaaaacgtgtatcttgTTATCCACG
TAAGTTCAACGAATAAgtgaaattacaaaattttcacAACGCCATATTTC
CCTCAACATTCCTACGGtatgaaaaaggattatttaCCCCTACCCcccga
aaaaaaaatcgaaaacaagaaaattaaaagttcgaaaattcaaatttcgt
cCAAATTTCAATGCAACCATTAGAGTGTTTCAAAGTTTAAGCGGAGTTTA
AGTTAGTACAAATAACCTTATCTATATAATTGCAAAGTGAAATATTGGGC
AATTCCtgaaaaaatttgtaccccctatgttgaggagatcttttttaaaa
ggtgacaccccctggatttttttctaatttttcaggaccccatggatttt
tttctcccacTTTATTGGACCACTatggattttcgacctcgtgatactga
ccaccctggatttctcattttccagaccaccctggacgtcacacttCCTC
ACCATAGGGGGTACAGGCTATTTCTGGAACAGCCCATTCTAGTTAAGTCT
ATTATCGCTTAAACAAAAACCAATTTAGAACCTAAAACACGcaacaattt
taaaataatcaaGATGTACAAAAACCTTGATATTGATGACCTCAAGATTT
CTATTTAcacgtttcaaaaaaaaattaaaaccccACCATAATGGCAAGAT
TCTGTGTTATCGTATTAATAAAAAGTCCAACACCTTTTGTTTACAAGTTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061328-exon-scaffold_355-1491911889:244384..245635 | TCONS_00061328-exon-scaffold_355-1491911889:244384..245635 | Clytia hemisphaerica | exon |
| TCONS_00061328-exon-scaffold_355-1510915933:244384..245635 | TCONS_00061328-exon-scaffold_355-1510915933:244384..245635 | Clytia hemisphaerica | exon |
| TCONS_00061328-exon-scaffold_355-1575043694:244384..245635 | TCONS_00061328-exon-scaffold_355-1575043694:244384..245635 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_355 | supercontig | scaffold_355:244384..245635 . |
Blast
The following BLAST results are available for this feature:
|
