TCONS_00061323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061323
Unique NameTCONS_00061323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061323 ID=TCONS_00061323|Name=TCONS_00061323|organism=Clytia hemisphaerica|type=transcript|length=732bp
CAAAGACTTGATTCCCAAACTCAACGTTTCTGATGAACACcgaaaaactt
tgaagaacAAACTTAAAAACTTTAATGGATCGAAGGCATATTTAATGATG
TATCTATTCAAAGATCCAAGTGTTAAATATATTGAAAGCCTGGAGGCTGG
TTTAACAATTGTGTGTGATGAATTGTTGAAGGTCTGGGACACCCTCTGGA
TTATTTACATTCACAAGGAGAAATTGTGCACGGCGTGATGTCCAACGCAC
GTCCAAGTGGATTCTTGTATTACTACAGATAAACTTTAAATTAACTTATA
ACAGACAGAATCAGTGAGGAAAATATACTAGGATGATCTATTACATTGAA
AATGTGGTTTTTGTTGTGAAAACAcattaaaattgacttaaatcgATGTT
GACATGGAGTTTggcgcaaaattttaaggattggcgcgcatcacgtgaaa
gtgataatttggaatttctggactattttggtatttcaaagCCCTTTCTA
AAGTATATAAAGTAGTACTTTATTCCATTTTAGTCAAACAcagaaagaat
tttgtaaaacggtcgaTTTATTACAGAGAAATAGAGATATATATCTCACT
TCTGACTTTACggaccattttctcaaaataagTTTCAGGGGGTTTTCGCA
CACCTTGGCAACGTTTTTTCAGGATTGGAAAGAGCTatgatcatgaaatt
ttcaggagttgCTCCATTTATCGTTTGCTATG
Run BLAST on NCBI

transcript from alignment at scaffold_355:207012..207743

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061323 ID=TCONS_00061323|Name=TCONS_00061323|organism=Clytia hemisphaerica|type=transcript|length=732bp|location=Sequence derived from alignment at scaffold_355:207012..207743 (Clytia hemisphaerica)
CATAGCAAACGATAAATGGAGcaactcctgaaaatttcatgatcatAGCT
CTTTCCAATCCTGAAAAAACGTTGCCAAGGTGTGCGAAAACCCCCTGAAA
cttattttgagaaaatggtccGTAAAGTCAGAAGTGAGATATATATCTCT
ATTTCTCTGTAATAAAtcgaccgttttacaaaattctttctgTGTTTGAC
TAAAATGGAATAAAGTACTACTTTATATACTTTAGAAAGGGctttgaaat
accaaaatagtccagaaattccaaattatcactttcacgtgatgcgcgcc
aatccttaaaattttgcgccAAACTCCATGTCAACATcgatttaagtcaa
ttttaatgTGTTTTCACAACAAAAACCACATTTTCAATGTAATAGATCAT
CCTAGTATATTTTCCTCACTGATTCTGTCTGTTATAAGTTAATTTAAAGT
TTATCTGTAGTAATACAAGAATCCACTTGGACGTGCGTTGGACATCACGC
CGTGCACAATTTCTCCTTGTGAATGTAAATAATCCAGAGGGTGTCCCAGA
CCTTCAACAATTCATCACACACAATTGTTAAACCAGCCTCCAGGCTTTCA
ATATATTTAACACTTGGATCTTTGAATAGATACATCATTAAATATGCCTT
CGATCCATTAAAGTTTTTAAGTTTgttcttcaaagtttttcgGTGTTCAT
CAGAAACGTTGAGTTTGGGAATCAAGTCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038474XLOC_038474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061323-exon-scaffold_355-1491911889:207012..207743TCONS_00061323-exon-scaffold_355-1491911889:207012..207743Clytia hemisphaericaexon
TCONS_00061323-exon-scaffold_355-1510915933:207012..207743TCONS_00061323-exon-scaffold_355-1510915933:207012..207743Clytia hemisphaericaexon
TCONS_00061323-exon-scaffold_355-1575043694:207012..207743TCONS_00061323-exon-scaffold_355-1575043694:207012..207743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:207012..207743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.08023	1.31103	0.460369	0.560459	1.8896	1.87441	4.94693	3.9752	3.26714	2.74773	3.36478	4.00521	3.13037	2.29537	2.20235	3.04466	0.971192	2.41327	5.2873	4.72599	3.59155	3.49585	1.2289	2.06876	2.00937	3.31968	12.225	9.03212	7.42694	10.6169
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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