TCONS_00061319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061319
Unique NameTCONS_00061319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1178

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061319 ID=TCONS_00061319|Name=TCONS_00061319|organism=Clytia hemisphaerica|type=transcript|length=1178bp
tTTCGTTTTTCTTGTGAAAGTTAAGTAAGAATTAAGAATAAGTACTTTCt
acttttataaaattttataaaatgggTCAAAAATATGTTTTACATAAAAT
TTATATATACTGTGTGATAAAAATATCCATGAAACATTTACATTGTCGAG
TATActttataaataaaatctataatataaaattttattgaCACGAAAAT
AAATTACGCTATTAAAGAAAGGCGTTCAAGGGCATGCTTCATGTAATGTT
taatacggaagcacccaaaaaagcctgTGCGTCCgccactaattttgaat
taaaaagaaataaaactaGTATCAAACGCTCGGGCTATTTTGGGTACTTC
CgtaaaaaacattacgtcataaatattATGAGTTGAAGACTGTCGAGAGA
AAACGTAATccgttaaggccggtctccacttttgcacgaaatgagcgaaa
actttatAACGTTCTTGGAAGGTCATTGggcggttgaaaaatgaagcaat
tccattggccaAATCTGCCGTAAcggtttaaaaaagttgaacttcttTCT
TAGTCGCTTTTTTTAGTGACGTAAAAAAATGGTTGAGAAAATAAACTGTC
GCCTATTTCACtcaaaagtggagaccggccttcaGTAAGATTTCTTCttg
ggaaaaattttgaaaaagttattcTCATTCGCTGTTCTTGATGCACATTG
ACTGAGACAGAGACAACCTCAAAAAGATAAAGTTGTATTAAAAGAATGGA
ATATCCAAAAATACTATAAACAAACAATAAGGGACTGCATCAGTTTATGG
TCTCCACTATAACCGTCTTGTATATCCTTCATAACCGCTCCATTACGCAT
TAAATATTGCGCAACATCGAAATGTCCGAATAATGACGTAATCTGAAGAG
GTGAAAGCCCTGACCACGATTTTAAATTAATGTCTGCTCCATAACTCATG
AGGAGTTTAACAATATCCAAGTCTCCTAGAACACAAGCTGTGTGAAGAGC
CGACAGACCAGGTTCTTTCATGAAGTTCacattaacttttttattttgta
gaatTTTCTGTAAAGTAGAAATGTCTGACTCGGTTACAAAATAGTGTAAT
AAGTTTTCTTGACTATTGACGGCTGCAAATTTACGCCCTTTTAAACTCGT
TTGTTTATTTGAAGACGTCTTCCGTTGA
Run BLAST on NCBI

protein sequence of TCONS_00061319-protein

>TCONS_00061319-protein ID=TCONS_00061319-protein|Name=TCONS_00061319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
QRKTSSNKQTSLKGRKFAAVNSQENLLHYFVTESDISTLQKILQNKKVNV
NFMKEPGLSALHTACVLGDLDIVKLLMSYGADINLKSWSGLSPLQITSLF
GHFDVAQYLMRNGAVMKDIQDGYSGDHKLMQSLIVCL
Run BLAST on NCBI

transcript from alignment at scaffold_355:52366..53543

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061319 ID=TCONS_00061319|Name=TCONS_00061319|organism=Clytia hemisphaerica|type=transcript|length=1178bp|location=Sequence derived from alignment at scaffold_355:52366..53543 (Clytia hemisphaerica)
TCAACGGAAGACGTCTTCAAATAAACAAACGAGTTTAAAAGGGCGTAAAT TTGCAGCCGTCAATAGTCAAGAAAACTTATTACACTATTTTGTAACCGAG TCAGACATTTCTACTTTACAGAAAattctacaaaataaaaaagttaatgt GAACTTCATGAAAGAACCTGGTCTGTCGGCTCTTCACACAGCTTGTGTTC TAGGAGACTTGGATATTGTTAAACTCCTCATGAGTTATGGAGCAGACATT AATTTAAAATCGTGGTCAGGGCTTTCACCTCTTCAGATTACGTCATTATT CGGACATTTCGATGTTGCGCAATATTTAATGCGTAATGGAGCGGTTATGA AGGATATACAAGACGGTTATAGTGGAGACCATAAACTGATGCAGTCCCTT ATTGTTTGTTTATAGTATTTTTGGATATTCCATTCTTTTAATACAACTTT ATCTTTTTGAGGTTGTCTCTGTCTCAGTCAATGTGCATCAAGAACAGCGA ATGAgaataactttttcaaaatttttcccaaGAAGAAATCTTACtgaagg ccggtctccacttttgaGTGAAATAGGCGACAGTTTATTTTCTCAACCAT TTTTTTACGTCACTAAAAAAAGCGACTAAGAaagaagttcaactttttta aaccgTTACGGCAGATTtggccaatggaattgcttcatttttcaaccgcc CAATGACCTTCCAAGAACGTTataaagttttcgctcatttcgtgcaaaag tggagaccggccttaacggATTACGTTTTCTCTCGACAGTCTTCAACTCA TaatatttatgacgtaatgttttttacGGAAGTACCCAAAATAGCCCGAG CGTTTGATACtagttttatttctttttaattcaaaattagtggcGGACGC AcaggcttttttgggtgcttccgtattaAACATTACATGAAGCATGCCCT TGAACGCCTTTCTTTAATAGCGTAATTTATTTTCGTGtcaataaaatttt atattatagattttatttataaagTATACTCGACAATGTAAATGTTTCAT GGATATTTTTATCACACAGTATATATAAATTTTATGTAAAACATATTTTT GAcccattttataaaattttataaaagtaGAAAGTACTTATTCTTAATTC TTACTTAACTTTCACAAGAAAAACGAAa

Coding sequence (CDS) from alignment at scaffold_355:52366..53543

>TCONS_00061319 ID=TCONS_00061319|Name=TCONS_00061319|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_355:52366..53543 (Clytia hemisphaerica)
CAACGGAAGACGTCTTCAAATAAACAAACGAGTTTAAAAGGGCGTAAATT
TGCAGCCGTCAATAGTCAAGAAAACTTATTACACTATTTTGTAACCGAGT
CAGACATTTCTACTTTACAGAAAattctacaaaataaaaaagttaatgtG
AACTTCATGAAAGAACCTGGTCTGTCGGCTCTTCACACAGCTTGTGTTCT
AGGAGACTTGGATATTGTTAAACTCCTCATGAGTTATGGAGCAGACATTA
ATTTAAAATCGTGGTCAGGGCTTTCACCTCTTCAGATTACGTCATTATTC
GGACATTTCGATGTTGCGCAATATTTAATGCGTAATGGAGCGGTTATGAA
GGATATACAAGACGGTTATAGTGGAGACCATAAACTGATGCAGTCCCTTA
TTGTTTGTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038470XLOC_038470Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061319-proteinTCONS_00061319-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061319-exon-scaffold_355-1491911889:52366..53543TCONS_00061319-exon-scaffold_355-1491911889:52366..53543Clytia hemisphaericaexon
TCONS_00061319-exon-scaffold_355-1510915933:52366..53543TCONS_00061319-exon-scaffold_355-1510915933:52366..53543Clytia hemisphaericaexon
TCONS_00061319-exon-scaffold_355-1575043694:52366..53543TCONS_00061319-exon-scaffold_355-1575043694:52366..53543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:52366..53543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.10711 0 0 0 0.0390163 0.376572 0.96949 0.339381 1.03184 0.519311 0.0975355 4.69955 4.22305 0.790017 1.04861 2.99587 1.71845 23.1186 19.4676 1.34517 1.03599 0.75563 1.56478 1.2579 1.29806 0.953863 0.375048 8.33064 6.9557
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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