TCONS_00061318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061318
Unique NameTCONS_00061318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061318 ID=TCONS_00061318|Name=TCONS_00061318|organism=Clytia hemisphaerica|type=transcript|length=492bp
gTTGGTTGTAACGACAATTTTCGTAAACTTGTCGGTGAGGTTCGTTCGGT
GACCGAGTGTTGCTCGCAAGACGCTCTTCGAACCTTTTTATTATTGTTTG
CATTTTCGTTATGatgtgaagatgaaaaacttCTCGATTCTTTAAATAAT
TTACGAAGAATCTTCCATGATGATGAATTTGTTGAAGGTGATGAGGgagt
cacccctgtctcaaataCAGGCTGTAAATCTTCGAAGCTTCCTTTTCCAG
AGTCTAATGATTCAGACCCAAAACGTTCCGGATAGCTATACACGGTTGTC
TGGCGTTGCAAAGGCATTTCTCTTTCCCTTGccacaaaaaaaacaagttc
TAATCCGTTAGatgaacaaaaaaaagataattagATCCGTACTCTACGAT
AGTTAGTTACCAATTGATTTCTCATTTATCTGTAAGCCTTGCTTAATACC
GCACCGCCATCATAAAAAAACATCCCCCTTCTTTTAATGTCT
Run BLAST on NCBI

protein sequence of TCONS_00061318-protein

>TCONS_00061318-protein ID=TCONS_00061318-protein|Name=TCONS_00061318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MPLQRQTTVYSYPERFGSESLDSGKGSFEDLQPVFETGVTPSSPSTNSSS
WKILRKLFKESRSFSSSHHNENANNNKKVRRASCEQHSVTERTSPTSLRK
LSLQP
Run BLAST on NCBI

transcript from alignment at scaffold_355:51431..51922

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061318 ID=TCONS_00061318|Name=TCONS_00061318|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at scaffold_355:51431..51922 (Clytia hemisphaerica)
AGACATTAAAAGAAGGGGGATGTTTTTTTATGATGGCGGTGCGGTATTAA
GCAAGGCTTACAGATAAATGAGAAATCAATTGGTAACTAACTATCGTAGA
GTACGGATctaattatcttttttttgttcatCTAACGGATTAgaacttgt
tttttttgtggCAAGGGAAAGAGAAATGCCTTTGCAACGCCAGACAACCG
TGTATAGCTATCCGGAACGTTTTGGGTCTGAATCATTAGACTCTGGAAAA
GGAAGCTTCGAAGATTTACAGCCTGtatttgagacaggggtgactcCCTC
ATCACCTTCAACAAATTCATCATCATGGAAGATTCTTCGTAAATTATTTA
AAGAATCGAGaagtttttcatcttcacatCATAACGAAAATGCAAACAAT
AATAAAAAGGTTCGAAGAGCGTCTTGCGAGCAACACTCGGTCACCGAACG
AACCTCACCGACAAGTTTACGAAAATTGTCGTTACAACCAAc

Coding sequence (CDS) from alignment at scaffold_355:51431..51922

>TCONS_00061318 ID=TCONS_00061318|Name=TCONS_00061318|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_355:51431..51922 (Clytia hemisphaerica)
ATGCCTTTGCAACGCCAGACAACCGTGTATAGCTATCCGGAACGTTTTGG
GTCTGAATCATTAGACTCTGGAAAAGGAAGCTTCGAAGATTTACAGCCTG
tatttgagacaggggtgactcCCTCATCACCTTCAACAAATTCATCATCA
TGGAAGATTCTTCGTAAATTATTTAAAGAATCGAGaagtttttcatcttc
acatCATAACGAAAATGCAAACAATAATAAAAAGGTTCGAAGAGCGTCTT
GCGAGCAACACTCGGTCACCGAACGAACCTCACCGACAAGTTTACGAAAA
TTGTCGTTACAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038469XLOC_038469Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061318-proteinTCONS_00061318-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061318-exon-scaffold_355-1491911889:51431..51922TCONS_00061318-exon-scaffold_355-1491911889:51431..51922Clytia hemisphaericaexon
TCONS_00061318-exon-scaffold_355-1510915933:51431..51922TCONS_00061318-exon-scaffold_355-1510915933:51431..51922Clytia hemisphaericaexon
TCONS_00061318-exon-scaffold_355-1575043694:51431..51922TCONS_00061318-exon-scaffold_355-1575043694:51431..51922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:51431..51922 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.25644	2.41423	0.633846	1.7011	0.381029	0.250473	10.2551	8.83175	1.99319	1.75703	4.32904	4.05129	31.317	28.7269	1.4545	2.66045	2.01234	1.82951	4.44169	3.9641	2.23467	1.65108	17.6712	12.05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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