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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061310 ID=TCONS_00061310|Name=TCONS_00061310|organism=Clytia hemisphaerica|type=transcript|length=2786bpRun BLAST on NCBI protein sequence of TCONS_00061310-protein >TCONS_00061310-protein ID=TCONS_00061310-protein|Name=TCONS_00061310-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp MLMYCRNHLSRLKLSNKVIISSPQCGCSTEVSPPLKKKRKLIYAKGKTFVRun BLAST on NCBI transcript from alignment at scaffold_355:348151..380834- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061310 ID=TCONS_00061310|Name=TCONS_00061310|organism=Clytia hemisphaerica|type=transcript|length=32684bp|location=Sequence derived from alignment at scaffold_355:348151..380834- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_355:348151..380834- >TCONS_00061310 ID=TCONS_00061310|Name=TCONS_00061310|organism=Clytia hemisphaerica|type=CDS|length=7875bp|location=Sequence derived from alignment at scaffold_355:348151..380834- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061310 vs. Swiss-Prot (Human)
Match: UBA3 (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 1.375e-97 Identity = 115/218 (52.75%), Postives = 139/218 (63.76%), Query Frame = 2
Query: 2252 YYNKIQDFDEDFYR--------------------------NLGDG*M------------AWWFQ---RVIYPGRTACIECNLDLYPKQVNFPLCTLAETPRLPEHCIEYIKIVVRPKEFPFGGGVNIDGDNPDHIAWICQRASERAQQYGIEGVNYRLTQGVIKNIIPAVVSTNAVIAAMCVTEVFKAITCCYKTMENYTVFNNSQGVYTYTFEAEKK 2782
++NKIQDF++ FYR N DG + F+ RVI PG TACIEC L+LYP QVNFP+CT+A PRLPEHCIEY++++ PKE PFG GV +DGD+P+HI WI Q++ ERA QY I GV YRLTQGV+K IIPAV STNAVIAA+C TEVFK T Y + NY VFN+ G+YTYTFEAE+K
Sbjct: 144 HFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERK 361 HSP 2 Score: 154.451 bits (389), Expect = 1.375e-97 Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 1921 AKFGHISKFLNTNGPMQHPEFEAAPILLDFIRENVNILVIGAGGLGCELLKDLALSGFQNISVIDMDTIDLSNLNRQFLFRAKDIGKPKAEVAAAFINKRIPSCNITP 2244
++ H+ KFL +GP HP+FE + L F+ + +LVIGAGGLGCELLK+LALSGF+ I VIDMDTID+SNLNRQFLFR KDIG+PKAEVAA F+N R+P+CN+ P
Sbjct: 36 GRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVP 143 The following BLAST results are available for this feature:
BLAST of TCONS_00061310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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