TCONS_00061307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061307
Unique NameTCONS_00061307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061307 ID=TCONS_00061307|Name=TCONS_00061307|organism=Clytia hemisphaerica|type=transcript|length=636bp
caaatatatggTGAAATATCTTagagagaaagcgaaataataaacttctt
tcttctttttgactcagactactctaacagaaaacttcctttcatgaaga
ccaaatttcataaactgtgcttgaaaaaaatctacaatatatatatttag
GAGATGGATGAATGGCATGGTGGTTTCAAAGGGTCATATACCCTGGACGA
ACAGCTTGTATAGAATGCAACCTCGACCTTTATCCAAAACAGGTAAACTT
CCCACTATGCACGTTAGCAGAAACACCTCGGTTACCGGAACATTGTATCG
AATATATCAAAATAGTTGTCCGGCCAAAAGAATTCCCCTTTGGTGgTGGT
GTGAACATAGATGGGGACAACCCTGACCACATCGCTTGGATTTGCCAACG
TGCATCTGAGCGAGCGCAACAGTACGGTATCGAAGGCGTAAACTATCGCT
TGACACAGGGTGTTATCAAAAATATCATCCCAGCGGTCGTCTCAACTAAT
GCAGTAATTGCAGCAATGTGTGTCACCGAAGTCTTCAAAGCTATCACTTG
TTGCTACAAAACCATGGAGAATTACACGGTGTTTAACAATTCACAGGGCG
TTTATACGTACACTTTCGAAGCAGAGAAGAAGGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_355:348151..366962-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061307 ID=TCONS_00061307|Name=TCONS_00061307|organism=Clytia hemisphaerica|type=transcript|length=18812bp|location=Sequence derived from alignment at scaffold_355:348151..366962- (Clytia hemisphaerica)
CAAATATATGGTGAAATATCTTAGAGAGAAAGCGAAATAATAAACTTCTT
TCTTCTTTTTGACTCAGACTACTCTAACAGAAAACTTCCTTTCATGAAGA
CCAAATTTCATAAACTGTGCTTGAAAAAAATCTACAATATATATGTAAGC
CACCCTTCTTAAACTATCCCCCCTTTCTTGCTATTCCACCCCCTTTTTCA
TGAAAATTTCTGATCCCCCTTTCACTTTTCACCCCCGAACTATGTATAGT
TTTGAATAAGACAAGATAAAGCTTCTGGTATTCTTATTCGTCAGAAGTAG
ATATCCTTTCCATGGAAACTGTTGGGTGATATGAGCTCACCATTGAAATA
AATGGTTCTCTCGAAGAGTCTTACGTTTTCAGCCATCCTTCGCAAGTTTT
CCATTTCATGATATTTTTGACTGTTCAAAAACATACCGACGTCAGTACGA
TCAAGACAAGATTTGACGTTAAATTGTGTGTTTTAGTCAGAGAGTTGTTT
TGTTGTGCGCAGATATGTAATTTTTGCGCAGGTATGTAATTTCTGCGCAG
ATATGTAATTAGTTTGCGCAGATATGTAATTTCTGCGCAAATATGTAATT
ATTTTGCGCAACTATGTAATTTCGAGCTGCGCAGATATGTAATTAAATTT
TTGCGCAGATATGTAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNATTACATATTTGCGCAGAAATTACATATCTGCGCAAAATAATTACATA
TCTGCGCAGAAATTACATATCTGCGCAAAAATTACATATCTGCGCATAAC
AGTTTTAATACAATTTTTTGTCACGGGACCCCAGGCTTGCCCCTACTAAA
AAGAATAGATATCTTTAATTTGAAATCTAAATTAAAGTTAGGAATTTTAC
GCATAGGGCTTTGCCGAATATTTATGAAAAAGAGTGACTCATTTTTGTTC
ATTTTCTTTTTCAGATTTAGGAGATGGATGAATGGCATGGTGGTATGTAT
GTTGTCTCTTTAGTTCCCACAATTCTCTTGTTTGTTTGTTGGTGAAAATC
CTCTCCGCTGTAATGTGCGTCAAGCATTGTCTAAAGGCCGGTCTCCACTT
GCGCGCGCTGCGACCGCATTTTTTGGCTTAAATCCTTTTTTACTTAAAAA
AAAGAATACGTCATAAAAATGTAGCGCGCGCTCGAAAAAAAAGTTTTTTC
AACCGTTACGTCAGATCGCGCCAATGGAATTGCTTCATTTTTCTTTTGAC
CAATAGCGTGGAAGCTTTGCTCGAAAAAGTGCGATCGAAGCTCACGCAAA
TGGAGACCTGCCTTAAGTATACAATAGTGCGAGGATCAATATGTTATACG
TTTGGTAAGTTTTTTTTTGCGGAACTAATTTTTGCGGTTGACACCCACTT
TTTGTCGAAATTCTCTTAAAAGTTTTGGAGAATTTATAGCAAAAAATGCA
TTTCGCAGAACTTATTTCCGTGGTAGACACCTCAAAACGCGAAACTTAGT
TCCCTCAAGGTAAAATATTCCAAACTTGGTCTGGTATTTTTTAACCAATC
GCCGAACCCTTCTGTTCATACATAATTTGTTCAAGAAACCTATTCATGAT
AATGCACCTCTGCAATTTCTTCTGTTATCTCATCACCTGATTGGTTTGGG
TAGGATACGAAAAAAGTTTTTTTATTACGTGAGATGATACACCTTTTCCC
GGTTAGCCGTTTCGTATAAAAAGGAAACATACTCTGCACATTTTTTTGTT
TGTGTTTTTGCTTTTAGGCAATGGAATGGTTTGTTTACTCGAAGTTTTGG
TGACTTTTTATACGAAGCAGCTAGCCATAAAAAGGTGTATTACAGTGGTG
CATCATATCATGATTACAAACTTCTGAATGAGATGCCTTTAGTATGAATA
GATAGAAATTGTCAGTAGCCAAAAGCTGGGAAGGGTAGTTTTAGAGATAT
CAATCTCATCAATTATTCTATTGTCCTTACATTGTCAAAATGACTTATTG
TGACAAAATAATGATCTGATGATCAAATATAAAGCTTCTTAAATGAATTT
CAACAAAAAATTTGCCACTAATCAATTTGATGCCGAAAATACAAAAGGAT
AGAAATTGGCACCCCATTCAAGCTCCAAGAGCGTTGAAATGGCTGTTCTA
CACGTTTTGCACGTGGCTTTATAATTACTGTAGGTGAGACAGGGGTGAGC
TTTACTATTCAATTCGATAAATAAATGATCATAGGAGAAAGACTCTAAGG
TGGAGAAAGAGGAAAAACTCGATAACCCAAACTTATCTGGTCACCGGTCG
TGGTCGCTGGTCGTGGTCGCCATTTCTGGTCGATGTTTAGAAACTCCGAT
TATTCGCACGCCGCCCCCTGTTTTTTTTACCCCGCCCAAATTAAAAACTC
AAGATTGGTATTGGGACCAGTACGCCTATCTCGGTGCAATTTTTCAGGAT
CTATTTCAGCGATTACAGATTATATATTTCTGGTGATAATAGCCCTTGGT
TTACTGAAAACATTCCAAATAGCCCTCACTAAGTTCAGGCTATTTTGATA
TGTTTTCAATGAACCTCGGGACTATTATTCCCAAATCACCCTCCAAACCA
TGTTATTACTAGTACAAATTAAATTGTACCAAGGACGAATCAATGCAATA
CAGTTTTATGTATTAAATGCGATAAAAAGTGTCAGTGTCAAGAAAATTAC
AAAAGAAAACTAATAGCTGTTTTTGATATAACGATTCAAACATATTTTGC
CCAGGTTTCAAAGGGTCATATACCCTGGACGAACAGCTTGTATAGAATGC
AACCTCGACCTTTATCCAAAACAGGTGAGAGGTTTTCTCCGTGTAGTTCT
GTGCTCCCAATTTTCCCTGATTTTACTAACTAACTAAATCTTTGTTAAGT
TTATATCATCTTCAACACTTTTGTAATTTTGTCTCTTCAAAATTTCAACA
TTTATTCCCCAGCAAATAAGAATCCTTTCGATTGATAAGCGGGATATATT
ATTGATTCGGTTTGTATTCTTAAACAAAAGGGAATAGTCTTTAGGTAGCT
TAGGGTTTTGTCTCACTAGTATAACAAGCTGCTAACAAGCTGCTTCTAAA
GTAATAATAAACATTTAAGTCTTCCGGACAGCTGTCCTCCGTCTTATGGC
TACGAAAGAGGTTTTGATTGTTTTGTCTGATCAGAGCATCACTTTCACCT
TTTAGAGCAGAGCAGAGCGTGTCGTGTGATGATTGGATGATTGAAATTCC
TTATTCTTGTATTTTGAATTGTATATTGTTTCGTTTTAAGGTAAACTTCC
CACTATGCACGTTAGCAGAAACACCTCGGTTACCGGAACATTGTATCGAA
TATATCAAAATAGTTGTCCGGCCAAAAGAATTCCCCTTTGGTGGTAAGCT
TCTTTGATATTAGTCAGTTTGGCCTATTCAAAGCGAAATGATACTTCATA
GTGAGGAGAGGTTAAACTTCATAGAACGGGCTCAATTATTTCTGTTTCCC
AGTGGCATGCTCTCCGAATAGGTAGATTTGGGTATACACGAACACTCTGG
GAAGCGGGGTTAATAGATATCTTACATATAGATGTATAAACCAAGATAGA
TCTACTCTGTTTTCCTTATAAATGGCAGTTGAAGCAAAATAACCTGCCTT
CTTTGCTGAAAGTAGATCATAGCTCAAGTAAACAAATAAACGCGAAGCGT
CGAGGCGAGAGAATGCAATGGACTTAATTATTCATATTACCGGCACTAAA
CTATGTTCTACTTATTAAAGATGGTGGATTATTTTGCTCCAGCTAGGGAC
GGGGAAGCTCTTTCTAGTGTTTTATATAAGATATCTGTGGGTTCTCTCAA
TGAAATTACTCAACGAGACCGACAGATTAACTTATCGCATGTGTCTCTCT
ATCCTTCAAAAGTTCATTTTCTCAAAATTTAAGGTGGTGTGAACATAGAT
GGGGACAACCCTGACCACATCGCTTGGATTTGCCAACGTGCATCTGAGCG
AGCGCAACAGTACGGTATCGAAGGCGTAAACTATCGCTTGACACAGGGTG
TTATCAAAAATATCATCCCAGCGGTCGTCTCAACTAATGCAGTAATTGCA
GGTACTTATTTTCTTCAGTGTGACCGCTGGCAGTATAGACCTTTGCATAA
ATTACGTTACGAACATCACTTGCCTCGTTTTGAAATTATTGCCATGTTGA
TTAACTCCCAGCGGATTTAATTAAAGCTACTTTCTATTCATAAAAAAATC
ATTTGATGTCTCAAGGGACATAATCACCATGGCAATTTTTTGAATACGAG
GCAAGTGATGTTTGTGACGTAATTTATGAAAAGGTTTGTTAATTTGACCC
CACCCTTCCCGATTAAGAGGGATTGGTTTATACTCATCCCTACAATCCTG
GCCAAAATATATTGAGAATTTAGCTTATTTCCTCGTTTTTCAAAATTTGG
AATTCGGGCGAGAAAGTCGTTTTTGGGCTAATTGATAAATTTATTCGAGT
ATTTCGTTTTGGGTGGGGTTAATTGACTTCCAGGCTATATTCTGAGCCCT
GTTGGACCATTCTGGGACTTTTGAATCCTCAGAGTCTTAAGTCTAATGTT
AAAACTCAGAGTTAAAACTCTATTCGTCTAACCTAATTTAGAGCGCTTCC
AAAATACTTGTGGTTATAAGATTTCGTGGGAATNNNNNNNNNNNNNNNNN
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GACGTGAGTAAATCCTTCGGTCCGGATGATATACACCCGAAAATGTTAGT
TGAACTGATTGACCATCTAGCCGAACCCCTGTCTATCATCATGAATAAGA
ACTTATCTGACCTGAGGGAACAATACCAAAAGATTCGAAGATGGCACATG
TGACTCCAATTTATAAAAACAAGGGTGCCCAAAACCTTGCGATAAATTAC
AGACCTGTTAGTTAGACTTCAGTAGTCTGTAAGTTAATGGAATCATTTAT
AAGAAAGCACATTATGAAGCATCTAACTGACGAAAAGCTTCTAACCAACA
AGCAATACGGCTTCATTAGTCGCCGCTCCACCGTCACACAACTCCTAAAT
TATTTGGACAAGTGCTGTGAAAGTATAGCTAACGGAAGTGTTGTTGACAC
TATATATTTCGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATACCAAA
CTTTGCAGACGATGGATTTAGAGGTGTCCAGACCAAGTCGTTTTACTATC
GATGTGTGACAGCATGGAACCAGCTACCAAAAGAGACTGTTAACTGTTAT
CCCGTAACAATTATCGTACTATCATATAACGCCTATACTACTGTATTACA
CGCATTATAAACGACTCCAGTCTAGCTAATACGAAAAGCTGTACCATTGA
AAAGAGGCCCGGAATCTTCGAGTTAGCGATTTTCGAGTTAGGAATTTTCG
AGTTAGCTAAATTATGACGTCATAAAAGTGCAAATTATGACGTCACTCGA
CTCTAACTCGATTTTTTATTTTCAAAAAATATTTTTCGAGCTAAAATTAA
CTCGAATTTTATTTTTCGAAAAAACCTTTTCGAGTTAGCTAACTCGGAAT
TTATTATTTTAATTTTTTTTTGTATGGTAGTAGGTAAATCAAAAAAAATT
CGAATGGTTTTATTCAAAATTCGAATGTTTTTATTCATAATTCGAATGTT
TTTATTCGAAATTCGAGTGTTAGTTTGGAAATTCGAATTCTTAGCTCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTAGCTAACTCGAAAACTTGTGAACGAAAAATAAATTCCGA
GTTAGCTAACTCGAAAAAAGGTTTTGTGAAAAAGAAATTCGAGTTAGCTA
ACTCGAAAAGTTTTCTTCGAAAAATAATAATCCTTTTTTGTAAATGACAA
AATCGAGTTAGAGTCGAGTGACGTCATAATTTGCACTTTTATGACGTCAT
AATTTAGCTAACTCGAAAATTTCTAACTCGAAAATTCCTAAATCGAAGAT
TCCGGGCCTCCCATTGAAAATTTCCCAACGTCTTTAGTTTCGCTTTCATA
TCAACGAAGCATGTTCAATGGGAAATTCCAATTGGACATTCCTCCTCTCA
AATTTTATTGATAAACACAAAACATAATGCCATTTTTTTTAAATCGCTTG
ATCGATCATAGAAAGATGAGATAGGGAATACTACCGTAAGAGAGAAAGTT
GGTGTTGTGTGTTTTTATTTTGAAAAACAAGGAAGATGGCGAGTTCTATT
GGTGTCCAAACTATCGTACAGAAATTATCTATGCTGCAACCAAAACCAAT
TGATCCTACAAAATGTGATCCAAATAAATCATTGTATTGGCAGATCATCA
GGAACAACCAAACTGTATCGAATCGTCAAGCCAAACAATTCAATTTGGGG
AACACCCTTACGTTTAATGACCCGATCAAAGCTGCCATGTTCCTCCTTCA
AAGAGAGTACGGCGATTCTGCACTTTTCAAGAACGATGTACACGAGGCTG
TCTTCATACCTCCAACGTTTGTTTCACAGCAATACTCAAAGAAATCGACC
GTTGCCATTCTGGATTATGAAGTCAAGAAAGATATGGACAGACTCTTGGA
TAATTTGAAAATACAATCACCAGGTTATTGGTTGACCAAAGAATTACAAA
ACTTTATGCAGACACAAAATGATATGAATCGGATTGACACGAATGCGTTT
GACCAATGGGTTGTAAATCTCAAAATCATGTACCTTGTTGTTGTTGTGCT
AAAAACTGAGTACGCTAATCTACTTTCTACTACTGTATATCAGACCGAGG
AAGTTTCATTCAAGCTTGCATCAATGAAATCCCTTCGACCACACCAGAAC
CAGCACTGAAGGTTTTTCTGAGAGAATCTCAAGGCAAAAAGAATTTCAAA
AAGCTTCTTAAACAAAAGATCGAGGAGAACCCACCACAGGAATCAAACAT
TCGATGGATCTTCGAATTGGAGTTGTCAGAGTTGGGAGAGCAACTAGAAC
ATTGGTTTTATAATCAACTTTCACCGTTAAAAGATGACATTCTCCAGGAC
ACAGTTATCCTTTCGTCAGTCAATTTTTTAACAAATGTTCGAAACAAGAT
GCATAAAGAAGCAGATTTCTTAATCATTTCCTGGCAAAGAAAACTCATCA
TTTCCGTAGAGATGAAACGCGAACTCACCAACGATCGAGTTTTCGACCAA
TTGGATTTGAACCATCAATTACTCGAGGAAAGATTAGGTGACCAACTTCA
ACCTGGATGGACATTCTTCCCCGTTGTCTGTGTCCAAAACAGTTCCATCT
CAATCGCTAGTAATCATTTCATCACCATGGAGACTGTAATCAAGCCATGG
TTGGCGAGCATCCTCGATAATTACCTAATCGTTCAAATCACTCAAAAACC
GACTCCACTCGATCAAGTTCAAAAGCTGTTGAATATTATCGTCTTTTCGA
TTCATGTTTCCAAGAAGGACCTCGTTGCACCCATAACCAGCTCAAACTGG
GTAGAGTACATCCAAGACGCCATCGAAAATGTTTCAACTAGTGACAACAT
TTTGTTTTACTCCAACCAACAGATGGCGGCATTGAACAACAATGATCCAC
GTTATAACAGACTGATAATTTCTGGCCCATTTGGTGTGGGTAAAAGTATT
TTGCTGAGAGACAAAGCCATACAATTGAATAAACAACCGGAATATAAAGG
CAAAGTCATGTATGCACTGGGAGAAAGATATTATCATATGCACACCATGC
TTTACTTTCGAATGAAGGTCGATTTGGAGGAAAAGCACGGGATTAAAGTG
GAAGAGATAATCGTTCAGGTCAGTGGTTTTTGTATATTATTTTTATCCAA
CTTTCACTGTTAGATTTGAAAGCCATTTTAAGGAGAAGGACTTTATACAA
TATATAGCTCTTTATAACGCCATTACCTTTTTTTCTGGTTAACCTTCCAT
CTTCACTGTTCAAAATACAGTAAATTCATCTGCCCAAAATTCGAACGACT
TTTCTCTTTAATTGGACATTTTTCTTTTTAGGTTTACTTATCAAAATGCG
TGGACTGCCAATATTTTGGGATAGGCTTTTAATTAACTTCATATTAACAA
TAATATCTATGTTTTCAATCTTTAATAGGAAACTAACCACGAGCAACTGA
TCAAACAAGTTAAACAAGATGGCATCAAAGCCCTGTTTAGTGATGAGTTT
GACACCAAAAACAATGTATCGATGAGGAAAATAATGAAGATGGTTGATTT
CTTGTGGATCGTTCCTTCGACTGATATTTTGCACTACAAAAACTTTCAAG
TATGGAAAGACGAATTTAGCTTTCTCCTTCTCTCGCAGAATTTTCGTAAT
TCGCGAAAGATCGTAGAAATGACAAAATTTCAAGCGCTCATTAATGGTTA
TCAATACAAAGAAGGTATCGTTATGCCACCGTATAATTCCCCAGCAGGCT
GTGAACCAATATTTGTTGATTCCTTTGGAAATACGAAAAAAGAAGCACGA
AGACGAACTAAAGATGGAATTTTAGTCATCGACGCTAGAAACCATGACAA
AATTTACAATCAGATAAGGGGAAAATGGAAAATATACGTTACACATCGAA
ACGATTTCACAGAACAGGAGAATCCATACAAATTTCTTCAAGAGGGGAAT
GTTTTGATTGTTGATGAGTACACATGTTATGGATTTGAATGGATGACAGT
CATCTTATTTGAAGGGAAGAGCGATCCATCAGCAACTTATCATAGCTGTA
ATGAAATGATGAGATGCAACACAAATCTTACTCTTGTCATGGAAAAAGAT
AAGTAAGCCTGGTAGCGAGGATGGTGGACAGTGACCTACGAACGCTCATT
AAAAACACGGATTACGGATTTTAAGAATGTTAATAGTACTTATAAAATTA
TAAACCTTTATGAGCCTTTTTTACACCGGCCCTTATCGGTGTAATCTTTT
CGTCGCTTGGGTAAAATATGGCCAGCTTAAGGGATCGGTATTGAATACAC
CTTTTCGACCGTAGTCGTGCGGTCAGTTGCTTGCCACTTTATTATTTAAT
TGTCCCCCTAAACTCGATCCAACCCTTTATTTCTATACCTTTTTCTATAG
GTGCGAAAAAAAGACTGGGACGGTTTTAGGATGGTAAAACGTCCGTTGGT
AAAACATTCCGGCGCGGCAATTGGTGGCTACACGGTCGAAAAGGTGTACA
CGTTTTTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATGTTTCTT
AAGAAATCGGCCTTTTTAGCCTTAAATGTTTCTGACATGTTTCTAAACTT
TTTGACATAATCAGCCTATTTTTCATGCAAAGATTGGAAGGTTCTAAAAA
AACCGTTTTAAAAAGGTTATTTACTCATTCTCAGCCTCAGCATGTTTCTT
AGATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTAAAAGTG
TGTTTCTTAAAAAAAAAAGACGTGTATTAGAGCCGGGCCAAAAATGAGCC
TTATCGTAATAAGTGACTGGAACGAGTGAAGGGTATATAAATTTCAACGT
ATTTTTTTTAACAGTATATCAAACTTTGCAGATTAAACTGAGTGAAACAA
AAAAGCTTCACATTTGTTTTTTCATAAATAGGTCAACAAAATTTTCAAAA
CCCTTGGATGTTCTTAACTTTTGGAGTTCTAAACACTGCGTCTTCTAAAG
CCTAAAATATTCTACAAATATTCTGACTTTCTCCATTTAGTGAGTATTTT
TGTGCAATCTTCATTTAAATTGGGTGTTTTTAATAAAGAGCCCTCAAATC
ATATAAAATACTCTTAAATTTGTTTTAAATAATTTGGCCAACGAAATTTT
ATGTCCTCAGCTAGTTCTTTAAAAAAACGTGTATAATGTCCGAAAAAATA
TGTTAATTTTAAGTTTAAGATTTAAAACTTTACGACACATTTTCTTAAAT
TTTTATTTGGAATTTTTATTTAAATCATTAGGATGATTGAGAATTCCCTA
AACAATAGTTATTTAAAACCAGGGCGAAATTTAATCGTATTGAAAATATT
TACAGAAAGCCCAATAAACAAATGATTTTTTTGTGCTTCTCCCAAAATTA
AATTACTCAGATAGTTGTAAATTCCCTAGCTGGTATCAAAAATCAAGAAT
GGTGCTTTCTGATGCCTTCAATTGTTCTTAATTTTTTTTTAATTGAAATT
GGCTTAGTAACGCATAATTTCTAGCATATCCATGATGCATCTGAAACCTT
AGGTAACACCTAGTAATTTTAGGCAACCCCTTATAATTTAGGTAACCCCT
TATAATTTAGGCAACCCCTTATAATTTAGGTAACCCCTTATAATTTAGGC
AACCCCTTATGATTTAGGTGACCCTGAGGGGTCCAATAAATTTTTCTTCA
CCTCGAAAGAAAACGTTTTTAAAAAATGCCTGAAAAAATCAATTAGTCTG
TTGAATTAGCGGATTTCTTAGGCGGGAAATTTTTTAAGTCAAATTAAATG
CCAAAAAAGTCAAAATGTTTTTACACCTTTTTTCTACTTATTTACCCCTT
CGATATCCCCTGGTCATTACGTAGTCAAATTAAAGTCGAAAGGTCAAATG
AAGGTGGAAAAGTCAAAATGTTTTTACACCTTTTGTTCTACTGATTTGCA
TCTTGGATATCCCCTGGTCATTACGTAGACATCTCAGCTGACCCCTTCGA
AATTTATGAACATAATTCAAATGCAAAATGGAAAAGTGTAGTTGTTGTGT
ATTTCATTTTGCGCTGTAGGCCAGAGTTATCTTGTACACAGTCTAGAATT
AATAAAAACAACACAACTTAGAGATTTCAAAAAAAAGTGACCCCTACATC
AATTGCCCCCTGGATCAAACAAGGTGCCAGTTGTCGCTTGACCTTTAATC
CCCCACTCCAGACAAGCAGGACGGTGGTCCAGCCATATAACACTAAACCG
ATACGACGTTCTTGCTTCAATAAAAATTACGTATCCCGGAATTATCCACG
TATGTATGAGTTAAGTTGGGTTACTCTGTACCAGAGTGTATCTCACGTTT
ATCGCTATTGCCTCTACGGCAATGAATTTCGAAATTAGCCGTAGACACTG
GGTCTGTGTACAGACAAGGTTGGGTGGTCTCAGCCAAAGAGATTTTGCGG
AAAATCTAGTTAAGCCTCTTTGTCTCATTCTCGTTTTTCAGCAATGTGTG
TCACCGAAGTCTTCAAAGCTATCACTTGGTGAGATTGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATT
GATTGATTGATTGATTGATTGATTGATTGATTGTTTGATTCGAATCATTA
ATTAATATATAGTTTCGAGATTTGCTAATTCTCTATTTCGTTATTCTACC
CTGCTCTTTCATTTTAGCGACCGTAGTGTAGTAATACCGAGTTTATGTAT
TTGCACTTTTGAGGACGGTAGAGTGACTGAAGCGATTTGGAAAAACCCGC
AATTCCGCCCCGCAAAATCGAGGACGGTAAAAGTGCTGATTTACCGTCGT
CCTCAGCTGGTCAGGATCTTCTCAAATTAGAACCTTACCGTCTCCGCCGC
TGGAAAACACACATACATAAACTCGGTATAAAGCATCCGGCTACGGTTCG
CAAGGTTGTGCGTTCAACCCTCAGCCGGGTCATACCAAAAATTTCCAAAA
TGGTACTTGATGCCTCTGAAGGGTCAAGGGTAAGTGGAGCAATCCAGGGA
GAAAGAGTGGCGCCCTCCCCTACTTTTGGGTAGATAGCTATCGAAAGAGG
ATCCTTCGGGTCGCCTCCGACTGCGGTCGCAGACTTACTTACTTCCGTTA
CTTACTACTTCATTTTATACACATAGTTGCTACAAAACCATGGAGAATTA
CACGGTGTTTAACAATTCACAGGGCGTTTATACGTACACTTTCGAAGCAG
AGAAGAAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038465XLOC_038465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061307-exon-scaffold_355-1575043694:366819..366962TCONS_00061307-exon-scaffold_355-1575043694:366819..366962Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1575043694:363971..363998TCONS_00061307-exon-scaffold_355-1575043694:363971..363998Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1575043694:362139..362208TCONS_00061307-exon-scaffold_355-1575043694:362139..362208Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1575043694:361570..361672TCONS_00061307-exon-scaffold_355-1575043694:361570..361672Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1575043694:360862..361029TCONS_00061307-exon-scaffold_355-1575043694:360862..361029Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1575043694:348885..348921TCONS_00061307-exon-scaffold_355-1575043694:348885..348921Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1575043694:348151..348236TCONS_00061307-exon-scaffold_355-1575043694:348151..348236Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:366819..366962TCONS_00061307-exon-scaffold_355-1510915933:366819..366962Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:363971..363998TCONS_00061307-exon-scaffold_355-1510915933:363971..363998Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:362139..362208TCONS_00061307-exon-scaffold_355-1510915933:362139..362208Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:361570..361672TCONS_00061307-exon-scaffold_355-1510915933:361570..361672Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:360862..361029TCONS_00061307-exon-scaffold_355-1510915933:360862..361029Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:348885..348921TCONS_00061307-exon-scaffold_355-1510915933:348885..348921Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1510915933:348151..348236TCONS_00061307-exon-scaffold_355-1510915933:348151..348236Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:366819..366962TCONS_00061307-exon-scaffold_355-1491911889:366819..366962Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:363971..363998TCONS_00061307-exon-scaffold_355-1491911889:363971..363998Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:362139..362208TCONS_00061307-exon-scaffold_355-1491911889:362139..362208Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:361570..361672TCONS_00061307-exon-scaffold_355-1491911889:361570..361672Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:360862..361029TCONS_00061307-exon-scaffold_355-1491911889:360862..361029Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:348885..348921TCONS_00061307-exon-scaffold_355-1491911889:348885..348921Clytia hemisphaericaexon
TCONS_00061307-exon-scaffold_355-1491911889:348151..348236TCONS_00061307-exon-scaffold_355-1491911889:348151..348236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_355supercontigscaffold_355:348151..366962 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4188	16.5557	23.3738	20.7005	1.10603	0.593962	5.30387	3.10232	4.51229	3.58101	4.46192	6.8607	1.34425	1.19679	2.48884	1.69372	3.88704	3.51774	2.71924	3.10813	2.98499	4.21727	4.35922	3.46028	3.91751	9.50683	2.10616	1.40034e-07	4.00943	3.41646
Blast
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BLAST of TCONS_00061307 vs. Swiss-Prot (Human)
Match: UBA3 (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.925e-69
Identity = 102/151 (67.55%), Postives = 120/151 (79.47%), Query Frame = 3 
Query:  180 RVIYPGRTACIECNLDLYPKQVNFPLCTLAETPRLPEHCIEYIKIVVRPKEFPFGGGVNIDGDNPDHIAWICQRASERAQQYGIEGVNYRLTQGVIKNIIPAVVSTNAVIAAMCVTEVFKAITCCYKTMENYTVFNNSQGVYTYTFEAEKK 632
            RVI PG TACIEC L+LYP QVNFP+CT+A  PRLPEHCIEY++++  PKE PFG GV +DGD+P+HI WI Q++ ERA QY I GV YRLTQGV+K IIPAV STNAVIAA+C TEVFK  T  Y  + NY VFN+  G+YTYTFEAE+K
Sbjct:  211 RVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTFEAERK 361
The following BLAST results are available for this feature:
BLAST of TCONS_00061307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBA31.925e-6967.55NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
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