TCONS_00061272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061272
Unique NameTCONS_00061272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061272 ID=TCONS_00061272|Name=TCONS_00061272|organism=Clytia hemisphaerica|type=transcript|length=1640bp
GTTCACTGTTTGGTGATAGAAAGGAGATTATATTACACTAATGTTTACAC
CTCATAAACAGTAAACCGATAAAATTCTGttttgatgttgaaaatttAGT
TTTACTGATCAAACAAAGGAGAGAAGAGTTGGTGCAAATATTACGCAAAG
CAAGAAAGAAGTCGCAGCgaataaagaaattttaatttgttggcaaagaa
aaatagaaagtaAAGAAGAAGGAAGAGAGTGTTAAAAGGCaggaaaagta
aaacaaaatgtTGAACTTTCAGCTTGCACTGGTTTTATGTTTGTCATTTT
ACAGCTGTAGTACTTATGCCAACGTCAATCACTTTTCTTATAAATTCTTG
AGCCAAGAATCTAAAGGAAATGCTGGTAATATCATATTTTCGCCAGCTAG
TGTAATTGGTGCTTTAAATATTGTATTGGATGGTGCTAAAGGAGATACTA
AGGACCAGTTGGAGATTGCTGTTGGTGGACAGGAGAGTTCCGGTGTACTA
GATGgattgaaaaaaatctcaagACCTGAATCCAAAGACAACCAACCGTT
aaaaattgctgaaaaaatCTGGGTTGATGACACGACAAAGGTTGTTGata
tctttcaaaagaaatatgaaaatgaaatcacTGAAGCTTCTTTCATCAAG
AATTCTGAAGAGGTTCGTCAACAAATCAACGATTGGGTTGCCAAAAATGC
TGATATTAAAGATCTTTTCAAGGAAGGTAGCATCGATAGTATGACGCGTC
TTGTTTTGGTCAATGCAATCAGTTTCAAAGGACTTTGGAAAACACCATTC
GAAAAGCAATATACAAAGAAAAGTAAATTTATGCTTGAAGATGGCACGAA
GAAGAAGATTGATCTAATGTATCAAAACgggaatttcaaaatggtataTG
AAGATAGGTATGAGAGCGTCGAGGTGCCTTATAAAGGTGACGAATACAAT
CTATTGGTGACTATGCCAAGTAAAAAATCCACCAAAATTGATGACTTTAT
TGCACAGATGAGTCAAGAAAAGATTCAACATATCTTTGATCGAATGCAGT
TATTCATGGATGGGAATAACATTGCACGCGGTGGGGATATTGAGTATAGT
CAAGACATCGatctgtttttaccaaaattcaTGGCAAAAAGTGAGTTTGA
CTTGAAGAAAAGTCTCACTAAAATGGGAGTTGCTGATCTGTTTGAGCAAG
GGAAAGCTGATTTGTCTGGAATCACTGGTGACCATAGCCTGTACGTCTCA
TCAGCTGTTCATCAGGCTAAAATTGAGATGGATGAGGAAGGAACAAAGGC
TAGTGCTGCAACTGGTATTGGAATAGCGGCTATGTCTTTACCACCTCGTT
TTGTGGTTAATCGTCCTTTCTTGTTCCACATTTTACACAAAGAGTCTGGA
ACTATCATCTTCGCAGGCGTGGTCAAGGATTTGGGAGAGTAACATATGCG
GAAAGAACAGTCTTTGAAATTAGACTTTATGgacttaacttttttttatc
tatcTACTGACTTTTTCactcacttttttatattttgtaatcttaattat
ttttgattattttgtaatttattttggtaattttgtcGTTTCTTAAATAT
ATATTGCGAATATTCTGTCGAAATTAttctgatattttta
Run BLAST on NCBI

protein sequence of TCONS_00061272-protein

>TCONS_00061272-protein ID=TCONS_00061272-protein|Name=TCONS_00061272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MLNFQLALVLCLSFYSCSTYANVNHFSYKFLSQESKGNAGNIIFSPASVI
GALNIVLDGAKGDTKDQLEIAVGGQESSGVLDGLKKISRPESKDNQPLKI
AEKIWVDDTTKVVDIFQKKYENEITEASFIKNSEEVRQQINDWVAKNADI
KDLFKEGSIDSMTRLVLVNAISFKGLWKTPFEKQYTKKSKFMLEDGTKKK
IDLMYQNGNFKMVYEDRYESVEVPYKGDEYNLLVTMPSKKSTKIDDFIAQ
MSQEKIQHIFDRMQLFMDGNNIARGGDIEYSQDIDLFLPKFMAKSEFDLK
KSLTKMGVADLFEQGKADLSGITGDHSLYVSSAVHQAKIEMDEEGTKASA
ATGIGIAAMSLPPRFVVNRPFLFHILHKESGTIIFAGVVKDLGE
Run BLAST on NCBI

transcript from alignment at scaffold_354:1163735..1165374

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061272 ID=TCONS_00061272|Name=TCONS_00061272|organism=Clytia hemisphaerica|type=transcript|length=1640bp|location=Sequence derived from alignment at scaffold_354:1163735..1165374 (Clytia hemisphaerica)
taaaaatatcagaaTAATTTCGACAGAATATTCGCAATATATATTTAAGA
AACgacaaaattaccaaaataaattacaaaataatcaaaaataattaaga
ttacaaaatataaaaaagtgagtGAAAAAGTCAGTAgatagataaaaaaa
agttaagtcCATAAAGTCTAATTTCAAAGACTGTTCTTTCCGCATATGTT
ACTCTCCCAAATCCTTGACCACGCCTGCGAAGATGATAGTTCCAGACTCT
TTGTGTAAAATGTGGAACAAGAAAGGACGATTAACCACAAAACGAGGTGG
TAAAGACATAGCCGCTATTCCAATACCAGTTGCAGCACTAGCCTTTGTTC
CTTCCTCATCCATCTCAATTTTAGCCTGATGAACAGCTGATGAGACGTAC
AGGCTATGGTCACCAGTGATTCCAGACAAATCAGCTTTCCCTTGCTCAAA
CAGATCAGCAACTCCCATTTTAGTGAGACTTTTCTTCAAGTCAAACTCAC
TTTTTGCCAtgaattttggtaaaaacagatCGATGTCTTGACTATACTCA
ATATCCCCACCGCGTGCAATGTTATTCCCATCCATGAATAACTGCATTCG
ATCAAAGATATGTTGAATCTTTTCTTGACTCATCTGTGCAATAAAGTCAT
CAATTTTGGTGGATTTTTTACTTGGCATAGTCACCAATAGATTGTATTCG
TCACCTTTATAAGGCACCTCGACGCTCTCATACCTATCTTCAtataccat
tttgaaattcccGTTTTGATACATTAGATCAATCTTCTTCTTCGTGCCAT
CTTCAAGCATAAATTTACTTTTCTTTGTATATTGCTTTTCGAATGGTGTT
TTCCAAAGTCCTTTGAAACTGATTGCATTGACCAAAACAAGACGCGTCAT
ACTATCGATGCTACCTTCCTTGAAAAGATCTTTAATATCAGCATTTTTGG
CAACCCAATCGTTGATTTGTTGACGAACCTCTTCAGAATTCTTGATGAAA
GAAGCTTCAgtgatttcattttcatatttcttttgaaagatatCAACAAC
CTTTGTCGTGTCATCAACCCAGattttttcagcaatttttAACGGTTGGT
TGTCTTTGGATTCAGGTcttgagatttttttcaatcCATCTAGTACACCG
GAACTCTCCTGTCCACCAACAGCAATCTCCAACTGGTCCTTAGTATCTCC
TTTAGCACCATCCAATACAATATTTAAAGCACCAATTACACTAGCTGGCG
AAAATATGATATTACCAGCATTTCCTTTAGATTCTTGGCTCAAGAATTTA
TAAGAAAAGTGATTGACGTTGGCATAAGTACTACAGCTGTAAAATGACAA
ACATAAAACCAGTGCAAGCTGAAAGTTCAacattttgttttacttttcct
GCCTTTTAACACTCTCTTCCTTCTTCTTtactttctatttttctttgcca
acaaattaaaatttctttattcGCTGCGACTTCTTTCTTGCTTTGCGTAA
TATTTGCACCAACTCTTCTCTCCTTTGTTTGATCAGTAAAACTaaatttt
caacatcaaaaCAGAATTTTATCGGTTTACTGTTTATGAGGTGTAAACAT
TAGTGTAATATAATCTCCTTTCTATCACCAAACAGTGAAC

Coding sequence (CDS) from alignment at scaffold_354:1163735..1165374

>TCONS_00061272 ID=TCONS_00061272|Name=TCONS_00061272|organism=Clytia hemisphaerica|type=CDS|length=1185bp|location=Sequence derived from alignment at scaffold_354:1163735..1165374 (Clytia hemisphaerica)
TTACTCTCCCAAATCCTTGACCACGCCTGCGAAGATGATAGTTCCAGACT
CTTTGTGTAAAATGTGGAACAAGAAAGGACGATTAACCACAAAACGAGGT
GGTAAAGACATAGCCGCTATTCCAATACCAGTTGCAGCACTAGCCTTTGT
TCCTTCCTCATCCATCTCAATTTTAGCCTGATGAACAGCTGATGAGACGT
ACAGGCTATGGTCACCAGTGATTCCAGACAAATCAGCTTTCCCTTGCTCA
AACAGATCAGCAACTCCCATTTTAGTGAGACTTTTCTTCAAGTCAAACTC
ACTTTTTGCCAtgaattttggtaaaaacagatCGATGTCTTGACTATACT
CAATATCCCCACCGCGTGCAATGTTATTCCCATCCATGAATAACTGCATT
CGATCAAAGATATGTTGAATCTTTTCTTGACTCATCTGTGCAATAAAGTC
ATCAATTTTGGTGGATTTTTTACTTGGCATAGTCACCAATAGATTGTATT
CGTCACCTTTATAAGGCACCTCGACGCTCTCATACCTATCTTCAtatacc
attttgaaattcccGTTTTGATACATTAGATCAATCTTCTTCTTCGTGCC
ATCTTCAAGCATAAATTTACTTTTCTTTGTATATTGCTTTTCGAATGGTG
TTTTCCAAAGTCCTTTGAAACTGATTGCATTGACCAAAACAAGACGCGTC
ATACTATCGATGCTACCTTCCTTGAAAAGATCTTTAATATCAGCATTTTT
GGCAACCCAATCGTTGATTTGTTGACGAACCTCTTCAGAATTCTTGATGA
AAGAAGCTTCAgtgatttcattttcatatttcttttgaaagatatCAACA
ACCTTTGTCGTGTCATCAACCCAGattttttcagcaatttttAACGGTTG
GTTGTCTTTGGATTCAGGTcttgagatttttttcaatcCATCTAGTACAC
CGGAACTCTCCTGTCCACCAACAGCAATCTCCAACTGGTCCTTAGTATCT
CCTTTAGCACCATCCAATACAATATTTAAAGCACCAATTACACTAGCTGG
CGAAAATATGATATTACCAGCATTTCCTTTAGATTCTTGGCTCAAGAATT
TATAAGAAAAGTGATTGACGTTGGCATAAGTACTACAGCTGTAAAATGAC
AAACATAAAACCAGTGCAAGCTGAAAGTTCAacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038442XLOC_038442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061272-exon-scaffold_354-1491911889:1163735..1165374TCONS_00061272-exon-scaffold_354-1491911889:1163735..1165374Clytia hemisphaericaexon
TCONS_00061272-exon-scaffold_354-1510915933:1163735..1165374TCONS_00061272-exon-scaffold_354-1510915933:1163735..1165374Clytia hemisphaericaexon
TCONS_00061272-exon-scaffold_354-1575043694:1163735..1165374TCONS_00061272-exon-scaffold_354-1575043694:1163735..1165374Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061272-proteinTCONS_00061272-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:1163735..1165374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.619807	0.459351	0.224569	0.192242	0.200603	0.369877	11.0285	11.4886	11.6577	6.52128	11.3533	11.6902	11.0968	8.88711	10.2205	13.4459	11.9672	15.2228	24.2991	28.0472	39.6953	35.5671	53.1288	62.3866	53.1303	47.0611	5.98314	6.63933	62.5748	50.3806
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023796Serpin_dom
IPR023795Serpin_CS
Blast
[Close]
BLAST of TCONS_00061272 vs. Swiss-Prot (Human)
Match: SPB9 (Serpin B9 OS=Homo sapiens GN=SERPINB9 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.711e-63
Identity = 124/372 (33.33%), Postives = 206/372 (55.38%), Query Frame = 3 
Query:  342 KFLSQESKGNAGNIIFSPASVIGALNIVLDGAKGDTKDQLEIAVGGQESSGVLDGLKKISRPESKDNQP--LKIAEKIWVDDTTKVVDIFQKK----YENEITEASFIKNSEEVRQQINDWVAKNAD--IKDLFKEGSIDSMTRLVLVNAISFKGLWKTPFEKQYTKKSKFMLEDGTKKKIDLMYQNGNFKMVY--EDRYESVEVPYKGDEYNLLVTMPSKKSTKIDDFIAQMSQEKIQHIFDRMQLFMDGNNIARGGDIEYSQDIDLFLPKFMAKSEFDLKKSLTKMGVADLFEQGKADLSGITGDHSLYVSSAVHQAKIEMDEEGTKASAATGIGIAA---MSLPPRFVVNRPFLFHILHKESGTIIFAG 1418
            K L Q++  +  N+  SP S+  AL +VL GAKG+T  Q+  A+       +    + +    +K      L+ A +++ + T + +  F++     Y  E+ E SFI+ +EE R+ IN WV+K  +  I++L    SID+ TRLVLVNAI FKG W  PF++ YT++  F +    ++ + +MYQ   FK+ +  E R + +E+PY   E +LLV +P       DD +   + EK    F+++  +          D   S ++++ LPKF  + ++D++  L  +G+ D F+QGKADLS ++ +  L +S  VH++ +E++EEGT+A+AA+   + A   M   PRF  + PFLF I H  + +I+F G
Sbjct:   17 KILCQDNPSH--NVFCSPVSISSALAMVLLGAKGNTATQMAQALSLNTEEDIHRAFQSLLTEVNKAGTQYLLRTANRLFGEKTCQFLSTFKESCLQFYHAELKELSFIRAAEESRKHINTWVSKKTEGKIEELLPGSSIDAETRLVLVNAIYFKGKWNEPFDETYTREMPFKINQEEQRPVQMMYQEATFKLAHVGEVRAQLLELPYARKELSLLVLLP-------DDGVELSTVEK-SLTFEKLTAWTKP-------DCMKSTEVEVLLPKFKLQEDYDMESVLRHLGIVDAFQQGKADLSAMSAERDLCLSKFVHKSFVEVNEEGTEAAAASSCFVVAECCMESGPRFCADHPFLFFIRHNRANSILFCG 371
The following BLAST results are available for this feature:
BLAST of TCONS_00061272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPB94.711e-6333.33Serpin B9 OS=Homo sapiens GN=SERPINB9 PE=1 SV=1[more]
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