TCONS_00061265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061265
Unique NameTCONS_00061265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061265 ID=TCONS_00061265|Name=TCONS_00061265|organism=Clytia hemisphaerica|type=transcript|length=456bp
GTCAACGCTCTTTTTATCGAATGTATAATCTCCAGTTTCCTATTTTCATG
TTAACGTAGTCATCGCAATTGTTTCGCTGTCTTGTTATAACAAAGTGATA
CACAGAGGGAAGATAAAATGCATGGTTATATAAATCTCCTTTCGATTTTG
TTGCCTCAACTGATAACTTCGAATTATCTTCTAATAAAGCTCTAAACGCT
GTAGGAAAATCAGTTCCATAGAATTTATTTATCCCAGAGTTCATCATAAT
GAGACTATCCCGATACTCGATTCCAATTGGTAGAAGAGAGGTCACGAGAC
TGACTGTACGGCCGTGAATCGGTCGATAGCAGTAAAACCAAATTTCATTT
ATCGGTTGGTAAGCATTGATTTCAGCCAAATGTATTTTGTCGAGGAGAAA
GCCTCCGGTTTGGAGCTGTGCAAATTGATCAACATTACCGTATGTAATAG
TGGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_354:968402..968857

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061265 ID=TCONS_00061265|Name=TCONS_00061265|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at scaffold_354:968402..968857 (Clytia hemisphaerica)
CTACCACTATTACATACGGTAATGTTGATCAATTTGCACAGCTCCAAACC
GGAGGCTTTCTCCTCGACAAAATACATTTGGCTGAAATCAATGCTTACCA
ACCGATAAATGAAATTTGGTTTTACTGCTATCGACCGATTCACGGCCGTA
CAGTCAGTCTCGTGACCTCTCTTCTACCAATTGGAATCGAGTATCGGGAT
AGTCTCATTATGATGAACTCTGGGATAAATAAATTCTATGGAACTGATTT
TCCTACAGCGTTTAGAGCTTTATTAGAAGATAATTCGAAGTTATCAGTTG
AGGCAACAAAATCGAAAGGAGATTTATATAACCATGCATTTTATCTTCCC
TCTGTGTATCACTTTGTTATAACAAGACAGCGAAACAATTGCGATGACTA
CGTTAACATGAAAATAGGAAACTGGAGATTATACATTCGATAAAAAGAGC
GTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038435XLOC_038435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061265-exon-scaffold_354-1491911889:968402..968857TCONS_00061265-exon-scaffold_354-1491911889:968402..968857Clytia hemisphaericaexon
TCONS_00061265-exon-scaffold_354-1510915933:968402..968857TCONS_00061265-exon-scaffold_354-1510915933:968402..968857Clytia hemisphaericaexon
TCONS_00061265-exon-scaffold_354-1575043694:968402..968857TCONS_00061265-exon-scaffold_354-1575043694:968402..968857Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:968402..968857 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.487891	0	0	0.153064	0	0	0	0	0	0.0956598	2.96133	3.67061	0.244681	0.262581	0.970433	0.663109	1.22149	3.67484	1.24987	1.01607	0.164689	0.598903	1.54214	1.65159	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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