TCONS_00061263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061263
Unique NameTCONS_00061263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061263 ID=TCONS_00061263|Name=TCONS_00061263|organism=Clytia hemisphaerica|type=transcript|length=334bp
CGACAAGAAGACATTTGACcattggattttaaaaccttcaAATAATGTAT
TTAATTGTAGGACTTCAAACTGACCAAATGACCCTAATACCAACAACATC
GGAACTAAAAGTTTTCCTTCAAGGATGTATCGCAATGCTACCTTCAATTC
ACCTTTGGGGATACTCCTTCAGTTAAATCTTTCTAACATGAACCTAAAGa
agtcaatcaatcaatcaaggaCACATCAACTAATGATTTCAATCTCAGAT
GGTTGTTCGGGCTAGAACTATCTGAGATTGGTGAAAATTAGATTATTAGT
TATACGACAAACTTCTATCCTTGAAAAATGACAT
Run BLAST on NCBI

transcript from alignment at scaffold_354:951795..952128

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061263 ID=TCONS_00061263|Name=TCONS_00061263|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at scaffold_354:951795..952128 (Clytia hemisphaerica)
ATGTCATTTTTCAAGGATAGAAGTTTGTCGTATAACTAATAATCTAATTT
TCACCAATCTCAGATAGTTCTAGCCCGAACAACCATCTGAGATTGAAATC
ATTAGTTGATGTGtccttgattgattgattgacttCTTTAGGTTCATGTT
AGAAAGATTTAACTGAAGGAGTATCCCCAAAGGTGAATTGAAGGTAGCAT
TGCGATACATCCTTGAAGGAAAACTTTTAGTTCCGATGTTGTTGGTATTA
GGGTCATTTGGTCAGTTTGAAGTCCTACAATTAAATACATTATTtgaagg
ttttaaaatccaatgGTCAAATGTCTTCTTGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038433XLOC_038433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061263-exon-scaffold_354-1491911889:951795..952128TCONS_00061263-exon-scaffold_354-1491911889:951795..952128Clytia hemisphaericaexon
TCONS_00061263-exon-scaffold_354-1510915933:951795..952128TCONS_00061263-exon-scaffold_354-1510915933:951795..952128Clytia hemisphaericaexon
TCONS_00061263-exon-scaffold_354-1575043694:951795..952128TCONS_00061263-exon-scaffold_354-1575043694:951795..952128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:951795..952128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.851451	0.553533	1.28541	0.314393	0.382743	0.907346	0.729783	0.341607	0.478334	0.296247	0	1.32314	0.943789	0.196027	0.805803	0.6918	0.21306	1.0919	0	1.26284	1.37205	0.401543	0.325419	0	0	0.543914	0.389169	0.830664	0	0.32095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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