TCONS_00061260 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061260
Unique NameTCONS_00061260
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061260 ID=TCONS_00061260|Name=TCONS_00061260|organism=Clytia hemisphaerica|type=transcript|length=270bp
ggatgctcttataaaaaaacgtgtagcacaGGAACTGATTTGGTCACATG
TCAAGAGTTTCTTACTGCTTGTCATGACTTGTTGAACTATTCGAGCCTTT
CAGTTCATTAGATTCAAATTTCAGTGACTTTTTGAGTTACTTATTACGCC
TGGTGGAACATGATTTATGGAATcaggtttcaatattttttaaatacaca
AAATTATGAATAGAAAAAAAGCGTAAAAATCTCTACAatggtgaaaaaaa
taaatagaatgtAATGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_354:899583..899852

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061260 ID=TCONS_00061260|Name=TCONS_00061260|organism=Clytia hemisphaerica|type=transcript|length=270bp|location=Sequence derived from alignment at scaffold_354:899583..899852 (Clytia hemisphaerica)
CTTTCATTacattctatttatttttttcaccatTGTAGAGATTTTTACGC
TTTTTTTCTATTCATAATTTtgtgtatttaaaaaatattgaaacctgATT
CCATAAATCATGTTCCACCAGGCGTAATAAGTAACTCAAAAAGTCACTGA
AATTTGAATCTAATGAACTGAAAGGCTCGAATAGTTCAACAAGTCATGAC
AAGCAGTAAGAAACTCTTGACATGTGACCAAATCAGTTCCtgtgctacac
gtttttttataagagcatcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038430XLOC_038430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061260-exon-scaffold_354-1491911889:899583..899852TCONS_00061260-exon-scaffold_354-1491911889:899583..899852Clytia hemisphaericaexon
TCONS_00061260-exon-scaffold_354-1510915933:899583..899852TCONS_00061260-exon-scaffold_354-1510915933:899583..899852Clytia hemisphaericaexon
TCONS_00061260-exon-scaffold_354-1575043694:899583..899852TCONS_00061260-exon-scaffold_354-1575043694:899583..899852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:899583..899852 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.566726	1.65794	4.49174	3.76668	3.05705	0.60393	2.18585	0	0.955139	1.18309	0	0.754873	1.13074	0	2.25264	1.03604	0.850879	1.74425	1.80733	1.89124	2.19177	2.40541	2.59919	3.54456	1.82541	2.71522	1.55419	4.14668	1.88707	3.20437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061260 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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