TCONS_00061258 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061258
Unique NameTCONS_00061258
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061258 ID=TCONS_00061258|Name=TCONS_00061258|organism=Clytia hemisphaerica|type=transcript|length=1723bp
GTAGAAAATAACAAcgacgacctcaaactgaacgttattgttatattttg
gtgttttttcaaGAGTGTTGCTTTTACNAGAAAATAACGAcgacgacctc
aaactgaacgttattgttatattttggtgttttttcaaGAGTGTTGCTTT
TACAGTTGCATAAAAAAATAGTAAtgtaaattatttcttttcttcaGAAT
TATTGAGACAGCTAAATGACATGCATTTTATTTAACTTTCAATTGATCAT
TAGTGAATTTTCTAACTATTTTATGTTTGATTTACATATaggatttcaaa
atttaaaataatacaACAGAAATTTAGTAACAATTAGTAATTATTTAACT
TTCATTGTGGCAAGCACATTTATATATCTGGTTTAAATCTTTCCtaagta
tttttaaaatttctttcagaCTTTAATAAAATTCATTTGTTAAATTCCAA
GTTTCATCTAATAACAAAATCATTATAATCTAAGTGATATAATCAGGCAT
TCGATGAAAAAGCATTTGAACCTTATCAAATGTTGCAAAACTAACACCAA
CTGCAATGGGGCCTTTGATCCAGTTTATACTTAGCCCTTTATAGAGTCCC
TTGATAAAACCTTCACTTAAAAATATATAACGAAGGGTTCCAACAAGCTT
TTTATATTTATATCCTTTGCCGTCTAATCCATCTGTTTGCATCCTTCTCC
TGACAATATCTAGAGGGTAACTGAATGATTGACCACAGACTCCAGCAACA
GCGCCATAGCCAAATCGATGGTAAAAAGTAAGTTCAGCAGTAGGATTTTC
CTCATGATATTTCTGTTTTAAAGTTTCATATATGAAAAATGATGTCCCTG
CATAGGGCATAATTCCTAAAACTGTAGGTATGTAACCATTATAAAATCTC
ATAAAACCTTCCTCTTTGTAAATTGTACGAAAAGCATGTCGAAGGGATTT
GTATTTCAGTTTCTGTGCAATAGCTAGTCGAGCACGTACCAAGTCCAGTG
GATATGTGAATGTACATGCCACTAGACCAGCAATGGAGCCTGCTAAGAAT
CGTTTTTCAGGAGGTAGTGGGACTTTCTTACCTCCAGCTAAATAAAGCTT
CATTTGTTCATGAGTGGTGAATTGAATAGCTGCATATGGTATAACACGTG
CCATCGTGGCACTATTCCCACGCCACCAGCTTAGAAAACCATTTTTTTTG
TAGCCTTTATACATTATATTAGCAGCAGTCTTGTAAGAAAACTCTGTCTT
TGAAACTTGAAacatgatttttgtacgatcCAAAGGTGCAATAACTGTTT
TAGCAAGAGCTCCAGCACATGCTCCTGACACCAATGAAGATAACACATCT
TTTTCAGTCTCCATATTACCATGTTTGATCAATTTGGGTTTTGATTGCTC
TGCAGGTGAAGACATTCTTTTGCATTATTATTGACTGAAACGAACCAATG
GAAATTAGCAACAAATTCCCTAATTGCATTATTTGATTTAAACAAATTGA
TTGTGATCTCATCAAGCAGAGACAAGGTAAGTGAGTACAAAGTTAGTAAA
AATCTGTGTTCCCTTGAGAATATTATTCACAAGGAGCTGGATATCAACAA
ATAAAGTTGCCCAGAGTTTCTGAGGTGAATATCATCATTATTAATTATGT
GCAGAATCTTCACTTCCAGCTCCAATTTTAACCTAAATTTTGCCTTTTAC
TATAGCCTATTACTATATTTTCC
Run BLAST on NCBI

protein sequence of TCONS_00061258-protein

>TCONS_00061258-protein ID=TCONS_00061258-protein|Name=TCONS_00061258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=311bp
MSSPAEQSKPKLIKHGNMETEKDVLSSLVSGACAGALAKTVIAPLDRTKI
MFQVSKTEFSYKTAANIMYKGYKKNGFLSWWRGNSATMARVIPYAAIQFT
THEQMKLYLAGGKKVPLPPEKRFLAGSIAGLVACTFTYPLDLVRARLAIA
QKLKYKSLRHAFRTIYKEEGFMRFYNGYIPTVLGIMPYAGTSFFIYETLK
QKYHEENPTAELTFYHRFGYGAVAGVCGQSFSYPLDIVRRRMQTDGLDGK
GYKYKKLVGTLRYIFLSEGFIKGLYKGLSINWIKGPIAVGVSFATFDKVQ
MLFHRMPDYIT
Run BLAST on NCBI

transcript from alignment at scaffold_354:849794..851516

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061258 ID=TCONS_00061258|Name=TCONS_00061258|organism=Clytia hemisphaerica|type=transcript|length=1723bp|location=Sequence derived from alignment at scaffold_354:849794..851516 (Clytia hemisphaerica)
GGAAAATATAGTAATAGGCTATAGTAAAAGGCAAAATTTAGGTTAAAATT
GGAGCTGGAAGTGAAGATTCTGCACATAATTAATAATGATGATATTCACC
TCAGAAACTCTGGGCAACTTTATTTGTTGATATCCAGCTCCTTGTGAATA
ATATTCTCAAGGGAACACAGATTTTTACTAACTTTGTACTCACTTACCTT
GTCTCTGCTTGATGAGATCACAATCAATTTGTTTAAATCAAATAATGCAA
TTAGGGAATTTGTTGCTAATTTCCATTGGTTCGTTTCAGTCAATAATAAT
GCAAAAGAATGTCTTCACCTGCAGAGCAATCAAAACCCAAATTGATCAAA
CATGGTAATATGGAGACTGAAAAAGATGTGTTATCTTCATTGGTGTCAGG
AGCATGTGCTGGAGCTCTTGCTAAAACAGTTATTGCACCTTTGgatcgta
caaaaatcatgtTTCAAGTTTCAAAGACAGAGTTTTCTTACAAGACTGCT
GCTAATATAATGTATAAAGGCTACAAAAAAAATGGTTTTCTAAGCTGGTG
GCGTGGGAATAGTGCCACGATGGCACGTGTTATACCATATGCAGCTATTC
AATTCACCACTCATGAACAAATGAAGCTTTATTTAGCTGGAGGTAAGAAA
GTCCCACTACCTCCTGAAAAACGATTCTTAGCAGGCTCCATTGCTGGTCT
AGTGGCATGTACATTCACATATCCACTGGACTTGGTACGTGCTCGACTAG
CTATTGCACAGAAACTGAAATACAAATCCCTTCGACATGCTTTTCGTACA
ATTTACAAAGAGGAAGGTTTTATGAGATTTTATAATGGTTACATACCTAC
AGTTTTAGGAATTATGCCCTATGCAGGGACATCATTTTTCATATATGAAA
CTTTAAAACAGAAATATCATGAGGAAAATCCTACTGCTGAACTTACTTTT
TACCATCGATTTGGCTATGGCGCTGTTGCTGGAGTCTGTGGTCAATCATT
CAGTTACCCTCTAGATATTGTCAGGAGAAGGATGCAAACAGATGGATTAG
ACGGCAAAGGATATAAATATAAAAAGCTTGTTGGAACCCTTCGTTATATA
TTTTTAAGTGAAGGTTTTATCAAGGGACTCTATAAAGGGCTAAGTATAAA
CTGGATCAAAGGCCCCATTGCAGTTGGTGTTAGTTTTGCAACATTTGATA
AGGTTCAAATGCTTTTTCATCGAATGCCTGATTATATCACTTAGATTATA
ATGATTTTGTTATTAGATGAAACTTGGAATTTAACAAATGAATTTTATTA
AAGtctgaaagaaattttaaaaatacttaGGAAAGATTTAAACCAGATAT
ATAAATGTGCTTGCCACAATGAAAGTTAAATAATTACTAATTGTTACTAA
ATTTCTGTtgtattattttaaattttgaaatcctATATGTAAATCAAACA
TAAAATAGTTAGAAAATTCACTAATGATCAATTGAAAGTTAAATAAAATG
CATGTCATTTAGCTGTCTCAATAATTCtgaagaaaagaaataatttacaT
TACTATTTTTTTATGCAACTGTAAAAGCAACACTCttgaaaaaacaccaa
aatataacaataacgttcagtttgaggtcgtcgTCGTTATTTTCTNGTAA
AAGCAACACTCttgaaaaaacaccaaaatataacaataacgttcagtttg
aggtcgtcgTTGTTATTTTCTAC

Coding sequence (CDS) from alignment at scaffold_354:849794..851516

>TCONS_00061258 ID=TCONS_00061258|Name=TCONS_00061258|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_354:849794..851516 (Clytia hemisphaerica)
ATGTCTTCACCTGCAGAGCAATCAAAACCCAAATTGATCAAACATGGTAA
TATGGAGACTGAAAAAGATGTGTTATCTTCATTGGTGTCAGGAGCATGTG
CTGGAGCTCTTGCTAAAACAGTTATTGCACCTTTGgatcgtacaaaaatc
atgtTTCAAGTTTCAAAGACAGAGTTTTCTTACAAGACTGCTGCTAATAT
AATGTATAAAGGCTACAAAAAAAATGGTTTTCTAAGCTGGTGGCGTGGGA
ATAGTGCCACGATGGCACGTGTTATACCATATGCAGCTATTCAATTCACC
ACTCATGAACAAATGAAGCTTTATTTAGCTGGAGGTAAGAAAGTCCCACT
ACCTCCTGAAAAACGATTCTTAGCAGGCTCCATTGCTGGTCTAGTGGCAT
GTACATTCACATATCCACTGGACTTGGTACGTGCTCGACTAGCTATTGCA
CAGAAACTGAAATACAAATCCCTTCGACATGCTTTTCGTACAATTTACAA
AGAGGAAGGTTTTATGAGATTTTATAATGGTTACATACCTACAGTTTTAG
GAATTATGCCCTATGCAGGGACATCATTTTTCATATATGAAACTTTAAAA
CAGAAATATCATGAGGAAAATCCTACTGCTGAACTTACTTTTTACCATCG
ATTTGGCTATGGCGCTGTTGCTGGAGTCTGTGGTCAATCATTCAGTTACC
CTCTAGATATTGTCAGGAGAAGGATGCAAACAGATGGATTAGACGGCAAA
GGATATAAATATAAAAAGCTTGTTGGAACCCTTCGTTATATATTTTTAAG
TGAAGGTTTTATCAAGGGACTCTATAAAGGGCTAAGTATAAACTGGATCA
AAGGCCCCATTGCAGTTGGTGTTAGTTTTGCAACATTTGATAAGGTTCAA
ATGCTTTTTCATCGAATGCCTGATTATATCACTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038428XLOC_038428Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061258-proteinTCONS_00061258-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061258-exon-scaffold_354-1491911889:849794..851516TCONS_00061258-exon-scaffold_354-1491911889:849794..851516Clytia hemisphaericaexon
TCONS_00061258-exon-scaffold_354-1510915933:849794..851516TCONS_00061258-exon-scaffold_354-1510915933:849794..851516Clytia hemisphaericaexon
TCONS_00061258-exon-scaffold_354-1575043694:849794..851516TCONS_00061258-exon-scaffold_354-1575043694:849794..851516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:849794..851516 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28826	3.90752	13.6641	14.4584	5.75136	5.29394	5.90489	7.47419	5.11438	5.16093	5.05681	3.65188	3.27277	3.88435	3.79224	3.91258	7.26515	6.27457	2.74009	3.18011	5.7774	5.70233	8.73208	9.42877	10.0636	12.0802	1.6387	1.37166	3.92735	3.97485
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR002167Graves_DC
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005743 mitochondrial inner membrane
Blast
[Close]
BLAST of TCONS_00061258 vs. Swiss-Prot (Human)
Match: S2542 (Mitochondrial coenzyme A transporter SLC25A42 OS=Homo sapiens GN=SLC25A42 PE=1 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 2.322e-92
Identity = 158/289 (54.67%), Postives = 197/289 (68.17%), Query Frame = -3 
Query:  498 EKDVLSSLVSGACAGALAKTVIAPLDRTKIMFQVSKTEFSYKTAANIMYKGYKKNGFLSWWRGNSATMARVIPYAAIQFTTHEQMKLYLA---GGKKVPLPPEKRFLAGSIAGLVACTFTYPLDLVRARLAIAQKLKYKSLRHAFRTIYKEEGFMRFYNGYIPTVLGIMPYAGTSFFIYETLKQKYHEENPTAELTFYHRFGYGAVAGVCGQSFSYPLDIVRRRMQTXXXXXXXXXXXXXXGTLRYIFLSEGFIKGLYKGLSINWIKGPIAVGVSFATFDKVQMLFHRM 1355
             + VLSSL+SGA AGALAKT +APLDRTKI+FQVS   FS K A  ++Y  Y   GFLS WRGNSATM RV+PYAAIQF+ HE+ K  L    G +   LPP  R  AG++AG  A + TYPLDLVRAR+A+  K  Y ++ H F  I +EEG    Y+G++PTVLG++PYAG SFF YETLK  + E +   +   + R  +GA AG+ GQS SYPLD+VRRRMQT      GY    +  TLR I   EG ++GLYKGLS+NW+KGPIAVG+SF TFD +Q+L   +
Sbjct:   30 HRQVLSSLLSGALAGALAKTAVAPLDRTKIIFQVSSKRFSAKEAFRVLYYTYLNEGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPWPRLFAGALAGTTAASLTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYPLDVVRRRMQT--AGVTGYPRASIARTLRTIVREEGAVRGLYKGLSMNWVKGPIAVGISFTTFDLMQILLRHL 316
The following BLAST results are available for this feature:
BLAST of TCONS_00061258 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S25422.322e-9254.67Mitochondrial coenzyme A transporter SLC25A42 OS=H... [more]
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