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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061253 ID=TCONS_00061253|Name=TCONS_00061253|organism=Clytia hemisphaerica|type=transcript|length=1690bp
GGAAAATAACGAAAACAGGTTAAACAAATGGAAAATATAAAACGTTCCAT
GTTTCTACCTCAAGGATTTCATTACAAAGATGTTGAAGCAATTTCACTTG
GACCAGATTTCTTTGGACCAACGGAGAAAGAGGGCTTTGACATGACCGGT
AAATATTCAATTGGACGTCTTAGATGGagattatttactttttatcatAT
GGTTTAACAAAGATACACATTCACTTGCACGAAAATTGATTCGAGTGATT
TTTCCAGTACCCCATGATAATCGGATGGAATATTGGAGTTGGTTTAACCC
TTATGATGCTACGTTTATCCAAATCGTGGAGAGATCGACCAGGGATAACC
TAAATCGACCAGTGATGTTTAATATTGATCTTTATCACTATTGGTTATAT
CCTCTATTGGATAATGAATTTGATTCAAAGATCATTGGTGAATATAAACA
GCCTGATCTTTCCCTAAATTATAATGGTAAAGAATATGATTATTTCGAAT
ATGATTTCGATTTTTGTGATGAACAAGGACTCAGGAGATTGATTGTAATG
GCATATAACGATTGCGAGGAAAACTGTTGCTTTGATGTTGTTTATACTAA
AGCAAACGATATATGGCACGGGAAGAGAGTGGATATTCAATTACCAGAGT
TGATAGAACACCCTATAACTGGTCAGTTTTCTAAAGATAGTCTTTATTTA
CACCAACTTGATATTGTTGACGAGGAAGAAAGTTTTGAGATTCACCAATA
TGGGTATGATGGGAAGTTTGTccgtacccagctggcacacaacgttgttt
caacgttaatctaacgttaaatgtacgttgtgaacgttagataaacgttg
aaacaacgttgtgtgccagctgggtacttATTCGATGGATGAGAATGGTT
TAGAAGCTAAATTCGAAACCATCAATGGATCacaatatttatttttccat
GACAGATGCTTTGACCCACTTAAAAAGGAAGATAAGAAAGTTATTATCAT
CAAATTTGATCCGAAATCTGATAATGTCATCTTAGCTGATGAGTTCGATG
TTTCGTTATTGGCTTCGATGGATCCTCAAAAGCCTGAGAAAAGATTATTA
AACCACCCCAttaaaaggtttggtagagttGTACAACCATGTCATACTGT
GATAACACCGCAAAACCAAATATTCAGTGCAATTGACTTGCAAtccaaac
aaaaactttttcaaattaacGATGTGAAGATATCAGTCTCCAAATATGCG
TTGAACTGGAATCTGATGGAAATCGGTGTAACTTTTCAGCCTGATGATCC
AGAGCAACTCGatgaaatgtttttcaaaattgtcaacTCAAACAACTCTA
ATGTTACCCTCAAGTATCTTGCTGTATTGGCTGTCTTGATGTCTTATAGT
ACCTTAGAATTGAGAAAGCTGAATTTGCCAGTAACTTTGTTCGGTTATCT
TGGCATCGAGAAGTGATATTGTTGAATCAAGATTTTGTTAGAATCAGAAA
GCACACTGAAAGCCACTTTTTGCAATCTTTTGTTTCTCGATATCTTTTTA
AGTTGAACTAAAACCACGAGCAAACGTGTATGAATCCTTTTCggtgtttg
cttttttttttagttaattcgtgttaatatagagaaattttgagttattt
ttttagttttcatcTTCAGAAATAGTTAGTTTACTCCAAA Run BLAST on NCBI protein sequence of TCONS_00061253-protein >TCONS_00061253-protein ID=TCONS_00061253-protein|Name=TCONS_00061253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MDENGLEAKFETINGSQYLFFHDRCFDPLKKEDKKVIIIKFDPKSDNVIL
ADEFDVSLLASMDPQKPEKRLLNHPIKRFGRVVQPCHTVITPQNQIFSAI
DLQSKQKLFQINDVKISVSKYALNWNLMEIGVTFQPDDPEQLDEMFFKIV
NSNNSNVTLKYLAVLAVLMSYSTLELRKLNLPVTLFGYLGIEK Run BLAST on NCBI transcript from alignment at scaffold_354:759229..760918 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061253 ID=TCONS_00061253|Name=TCONS_00061253|organism=Clytia hemisphaerica|type=transcript|length=1690bp|location=Sequence derived from alignment at scaffold_354:759229..760918 (Clytia hemisphaerica)
TTTGGAGTAAACTAACTATTTCTGAAgatgaaaactaaaaaaataactca
aaatttctctatattaacacgaattaactaaaaaaaaaagcaaacaccGA
AAAGGATTCATACACGTTTGCTCGTGGTTTTAGTTCAACTTAAAAAGATA
TCGAGAAACAAAAGATTGCAAAAAGTGGCTTTCAGTGTGCTTTCTGATTC
TAACAAAATCTTGATTCAACAATATCACTTCTCGATGCCAAGATAACCGA
ACAAAGTTACTGGCAAATTCAGCTTTCTCAATTCTAAGGTACTATAAGAC
ATCAAGACAGCCAATACAGCAAGATACTTGAGGGTAACATTAGAGTTGTT
TGAgttgacaattttgaaaaacatttcatCGAGTTGCTCTGGATCATCAG
GCTGAAAAGTTACACCGATTTCCATCAGATTCCAGTTCAACGCATATTTG
GAGACTGATATCTTCACATCgttaatttgaaaaagtttttgtttggaTTG
CAAGTCAATTGCACTGAATATTTGGTTTTGCGGTGTTATCACAGTATGAC
ATGGTTGTACaactctaccaaaccttttaaTGGGGTGGTTTAATAATCTT
TTCTCAGGCTTTTGAGGATCCATCGAAGCCAATAACGAAACATCGAACTC
ATCAGCTAAGATGACATTATCAGATTTCGGATCAAATTTGATGATAATAA
CTTTCTTATCTTCCTTTTTAAGTGGGTCAAAGCATCTGTCatggaaaaat
aaatattgtGATCCATTGATGGTTTCGAATTTAGCTTCTAAACCATTCTC
ATCCATCGAATaagtacccagctggcacacaacgttgtttcaacgtttat
ctaacgttcacaacgtacatttaacgttagattaacgttgaaacaacgtt
gtgtgccagctgggtacggACAAACTTCCCATCATACCCATATTGGTGAA
TCTCAAAACTTTCTTCCTCGTCAACAATATCAAGTTGGTGTAAATAAAGA
CTATCTTTAGAAAACTGACCAGTTATAGGGTGTTCTATCAACTCTGGTAA
TTGAATATCCACTCTCTTCCCGTGCCATATATCGTTTGCTTTAGTATAAA
CAACATCAAAGCAACAGTTTTCCTCGCAATCGTTATATGCCATTACAATC
AATCTCCTGAGTCCTTGTTCATCACAAAAATCGAAATCATATTCGAAATA
ATCATATTCTTTACCATTATAATTTAGGGAAAGATCAGGCTGTTTATATT
CACCAATGATCTTTGAATCAAATTCATTATCCAATAGAGGATATAACCAA
TAGTGATAAAGATCAATATTAAACATCACTGGTCGATTTAGGTTATCCCT
GGTCGATCTCTCCACGATTTGGATAAACGTAGCATCATAAGGGTTAAACC
AACTCCAATATTCCATCCGATTATCATGGGGTACTGGAAAAATCACTCGA
ATCAATTTTCGTGCAAGTGAATGTGTATCTTTGTTAAACCATatgataaa
aagtaaataatctCCATCTAAGACGTCCAATTGAATATTTACCGGTCATG
TCAAAGCCCTCTTTCTCCGTTGGTCCAAAGAAATCTGGTCCAAGTGAAAT
TGCTTCAACATCTTTGTAATGAAATCCTTGAGGTAGAAACATGGAACGTT
TTATATTTTCCATTTGTTTAACCTGTTTTCGTTATTTTCC Coding sequence (CDS) from alignment at scaffold_354:759229..760918 >TCONS_00061253 ID=TCONS_00061253|Name=TCONS_00061253|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_354:759229..760918 (Clytia hemisphaerica)
TCACTTCTCGATGCCAAGATAACCGAACAAAGTTACTGGCAAATTCAGCT
TTCTCAATTCTAAGGTACTATAAGACATCAAGACAGCCAATACAGCAAGA
TACTTGAGGGTAACATTAGAGTTGTTTGAgttgacaattttgaaaaacat
ttcatCGAGTTGCTCTGGATCATCAGGCTGAAAAGTTACACCGATTTCCA
TCAGATTCCAGTTCAACGCATATTTGGAGACTGATATCTTCACATCgtta
atttgaaaaagtttttgtttggaTTGCAAGTCAATTGCACTGAATATTTG
GTTTTGCGGTGTTATCACAGTATGACATGGTTGTACaactctaccaaacc
ttttaaTGGGGTGGTTTAATAATCTTTTCTCAGGCTTTTGAGGATCCATC
GAAGCCAATAACGAAACATCGAACTCATCAGCTAAGATGACATTATCAGA
TTTCGGATCAAATTTGATGATAATAACTTTCTTATCTTCCTTTTTAAGTG
GGTCAAAGCATCTGTCatggaaaaataaatattgtGATCCATTGATGGTT
TCGAATTTAGCTTCTAAACCATTCTCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061253-exon-scaffold_354-1491911889:759229..760918 | TCONS_00061253-exon-scaffold_354-1491911889:759229..760918 | Clytia hemisphaerica | exon |
| TCONS_00061253-exon-scaffold_354-1510915933:759229..760918 | TCONS_00061253-exon-scaffold_354-1510915933:759229..760918 | Clytia hemisphaerica | exon |
| TCONS_00061253-exon-scaffold_354-1575043694:759229..760918 | TCONS_00061253-exon-scaffold_354-1575043694:759229..760918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:759229..760918 . |
Blast
The following BLAST results are available for this feature:
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