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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061252 ID=TCONS_00061252|Name=TCONS_00061252|organism=Clytia hemisphaerica|type=transcript|length=2119bp
CCTACATCGCCAATAAGTCAATAATTCAATTGCGAAAGGTCTGCGTAGGG
TTTACGTAGTTCCTGGTTCTGTTCTGTATCTGGGTTTAATACCTTTTTTA
CAGTCATTTCCAAACTCTTTACCCTCGTACACTTTGTTGCTCAAAGTAAT
TAACGACAATTAACAACCTCATAACGGTTGACATTGCTAGCTTGTTTTTT
TGCGTAAAATTGCTGtctttcataaatttttttttgtgtcaaataattaa
attttgCACCTAAACCAAGGTGTAGTGGTGTAGTGGTCATCGCTCTTAAC
TCCCGTCTGTGAGGTccgagttcgattcccactgtAGTACTACGGTTCAC
TTGGGAAGTGAACATACCTTCTCGAGAGTGTGGGTGATatgccagacatt
gtggtgtgtgTGATGTCACTCATCCCGTTCTGCGCCTGCGACGAGCTATA
TGCTCTCCCGCGCAGTTCGAGTGTCACCACTATGCATCATGGTATCACTG
TGTCTCGCCTGCACAGAACCATCGGTGTCTGGAAAGCGCTAAGCGTTCCA
acttgaaaaaggaggaattcctacttcgtaaggagtaggacccattcccc
ggtggagggctcatatcatatCATAAACGATAACCATCAGCTTACTCTTA
GTATGAACTGATATCCAGGACATTTGATTTTCCCTGTCTGAAAATGATCT
TGTTTTCTCCACTTCATAGAATTCTGCATAATATTTGCATTATCCCATTA
GATTATAACTTGGTATACGCATAACCATAATGTCACGAGGAGATCGGGCT
CAATTTTTCTAGAGACGATCCGCAACAAAATGTCTATATCGATTGAGACC
GGAAAGTTATGAATGCAGATAAGTCTTTAGTGCAATAGGTATCTTCTGAA
GGTTGTGTCCAGAATCACAAATCTCCATCTACTCTGGATGTGGTGTTAGA
TAATGTCCACCTGTTCCGTTTGATTCACATTGTTTTCTAGTCATTGGTAT
TAAAAGTTGTCCTTGATTATCACTTAAACGTCTATTGTACAAAGACACTA
TAGTTTCACCGTTAGAACCTTTTCGGAGACAAGGTGAGGCGTTTcctgat
ttcaaaagtttattcGGATCATCTTCGTCATTCGTTTCAAATAACGACGA
AAGTCGGCGTGACATTCGTTTAATAACCGACAAATTTGGCGTCGTCAGGG
GAGAATCATTTGGGTTCATTTGCATTTTGATATTGAAGACATTTGCCAAA
GCGTGACGGAACGGTTTCAATCTTATAGTGCACAAAAAGGGATTGACGGC
GCTGTTTGCGATGATGAACAAAAATTGCAGATCGCGGATCACGTGGCGGC
CTGTACAATCACAGTAAGTGCAAAATTTGATAATATACATCATGATAATT
GCGGGTGTGTAACAAGCGAAAAACATGATCAGGATAGACAAAAACAGTTT
CGTAACCCTTCTATCTGACTTCCGATGTGACTGCTTTGGATCGGTAATAC
TTTTACGTTCTCGCGAATATTCTCCCAAAGTTTTGAGTAATCGGAAAGTT
ACTATGAAGATAACCATCACCAGAATAAGTGATATACTTGCAAATGTGAT
CATAAAATCAATAAAGCCAACTGCGTAATACAATAATGATATACCAATGG
ATAAAAGCCATATCATTGAAAACACTAGGAGGCAGAAACGCCGATTTAAA
AGTCGCCTATATTTAATGGCCCAATTAATAGCGCCGTATCTGTCAACGCA
GAAAGCAGTCAAATTCAAAATACTAGCCGTTTTGGATGTGAAGTAAGTTA
TTCGTGCTATGATTACATGAATGTTCTTTTTCTCACCAACGGCTTCTAGC
GCATGCGTAGCTACAATAATCGGTAGTGTGACGCAACCAACGATTAAATC
GGTCACGGCAAGATTTACAAGTATAAACATGAAAGGGGTGCGTAGTTTTT
TGAAAGGATCTTTGTAGACAGCCAAGCATACTAAAACATTACCAAGGATA
GTTATGATACACAGTATTCCTGCAACACCGGTCGTGAAATATGATAGCTC
AGTGGGCGCCCATACATGAGAACACGGTGCACTGACTAAAGACATTTTGA
tacatttaaacttttttcc Run BLAST on NCBI protein sequence of TCONS_00061252-protein >TCONS_00061252-protein ID=TCONS_00061252-protein|Name=TCONS_00061252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
GKKFKCIKMSLVSAPCSHVWAPTELSYFTTGVAGILCIITILGNVLVCLA
VYKDPFKKLRTPFMFILVNLAVTDLIVGCVTLPIIVATHALEAVGEKKNI
HVIIARITYFTSKTASILNLTAFCVDRYGAINWAIKYRRLLNRRFCLLVF
SMIWLLSIGISLLYYAVGFIDFMITFASISLILVMVIFIVTFRLLKTLGE
YSRERKSITDPKQSHRKSDRRVTKLFLSILIMFFACYTPAIIMMYIIKFC
TYCDCTGRHVIRDLQFLFIIANSAVNPFLCTIRLKPFRHALANVFNIKMQ
MNPNDSPLTTPNLSVIKRMSRRLSSLFETNDEDDPNKLLKSGNASPCLRK
GSNGETIVSLYNRRLSDNQGQLLIPMTRKQCESNGTGGHYLTPHPE Run BLAST on NCBI transcript from alignment at scaffold_354:748050..750168 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061252 ID=TCONS_00061252|Name=TCONS_00061252|organism=Clytia hemisphaerica|type=transcript|length=2119bp|location=Sequence derived from alignment at scaffold_354:748050..750168 (Clytia hemisphaerica)
ggaaaaaagtttaaatgtaTCAAAATGTCTTTAGTCAGTGCACCGTGTTC
TCATGTATGGGCGCCCACTGAGCTATCATATTTCACGACCGGTGTTGCAG
GAATACTGTGTATCATAACTATCCTTGGTAATGTTTTAGTATGCTTGGCT
GTCTACAAAGATCCTTTCAAAAAACTACGCACCCCTTTCATGTTTATACT
TGTAAATCTTGCCGTGACCGATTTAATCGTTGGTTGCGTCACACTACCGA
TTATTGTAGCTACGCATGCGCTAGAAGCCGTTGGTGAGAAAAAGAACATT
CATGTAATCATAGCACGAATAACTTACTTCACATCCAAAACGGCTAGTAT
TTTGAATTTGACTGCTTTCTGCGTTGACAGATACGGCGCTATTAATTGGG
CCATTAAATATAGGCGACTTTTAAATCGGCGTTTCTGCCTCCTAGTGTTT
TCAATGATATGGCTTTTATCCATTGGTATATCATTATTGTATTACGCAGT
TGGCTTTATTGATTTTATGATCACATTTGCAAGTATATCACTTATTCTGG
TGATGGTTATCTTCATAGTAACTTTCCGATTACTCAAAACTTTGGGAGAA
TATTCGCGAGAACGTAAAAGTATTACCGATCCAAAGCAGTCACATCGGAA
GTCAGATAGAAGGGTTACGAAACTGTTTTTGTCTATCCTGATCATGTTTT
TCGCTTGTTACACACCCGCAATTATCATGATGTATATTATCAAATTTTGC
ACTTACTGTGATTGTACAGGCCGCCACGTGATCCGCGATCTGCAATTTTT
GTTCATCATCGCAAACAGCGCCGTCAATCCCTTTTTGTGCACTATAAGAT
TGAAACCGTTCCGTCACGCTTTGGCAAATGTCTTCAATATCAAAATGCAA
ATGAACCCAAATGATTCTCCCCTGACGACGCCAAATTTGTCGGTTATTAA
ACGAATGTCACGCCGACTTTCGTCGTTATTTGAAACGAATGACGAAGATG
ATCCgaataaacttttgaaatcaggAAACGCCTCACCTTGTCTCCGAAAA
GGTTCTAACGGTGAAACTATAGTGTCTTTGTACAATAGACGTTTAAGTGA
TAATCAAGGACAACTTTTAATACCAATGACTAGAAAACAATGTGAATCAA
ACGGAACAGGTGGACATTATCTAACACCACATCCAGAGTAGATGGAGATT
TGTGATTCTGGACACAACCTTCAGAAGATACCTATTGCACTAAAGACTTA
TCTGCATTCATAACTTTCCGGTCTCAATCGATATAGACATTTTGTTGCGG
ATCGTCTCTAGAAAAATTGAGCCCGATCTCCTCGTGACATTATGGTTATG
CGTATACCAAGTTATAATCTAATGGGATAATGCAAATATTATGCAGAATT
CTATGAAGTGGAGAAAACAAGATCATTTTCAGACAGGGAAAATCAAATGT
CCTGGATATCAGTTCATACTAAGAGTAAGCTGATGGTTATCGTTTATGat
atgatatgagccctccaccggggaatgggtcctactccttacgaagtagg
aattcctcctttttcaagtTGGAACGCTTAGCGCTTTCCAGACACCGATG
GTTCTGTGCAGGCGAGACACAGTGATACCATGATGCATAGTGGTGACACT
CGAACTGCGCGGGAGAGCATATAGCTCGTCGCAGGCGCAGAACGGGATGA
GTGACATCAcacacaccacaatgtctggcatATCACCCACACTCTCGAGA
AGGTATGTTCACTTCCCAAGTGAACCGTAGTACTacagtgggaatcgaac
tcggACCTCACAGACGGGAGTTAAGAGCGATGACCACTACACCACTACAC
CTTGGTTTAGGTGcaaaatttaattatttgacacaaaaaaaaatttatga
aagaCAGCAATTTTACGCAAAAAAACAAGCTAGCAATGTCAACCGTTATG
AGGTTGTTAATTGTCGTTAATTACTTTGAGCAACAAAGTGTACGAGGGTA
AAGAGTTTGGAAATGACTGTAAAAAAGGTATTAAACCCAGATACAGAACA
GAACCAGGAACTACGTAAACCCTACGCAGACCTTTCGCAATTGAATTATT
GACTTATTGGCGATGTAGG Coding sequence (CDS) from alignment at scaffold_354:748050..750168 >TCONS_00061252 ID=TCONS_00061252|Name=TCONS_00061252|organism=Clytia hemisphaerica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_354:748050..750168 (Clytia hemisphaerica)
ggaaaaaagtttaaatgtaTCAAAATGTCTTTAGTCAGTGCACCGTGTTC
TCATGTATGGGCGCCCACTGAGCTATCATATTTCACGACCGGTGTTGCAG
GAATACTGTGTATCATAACTATCCTTGGTAATGTTTTAGTATGCTTGGCT
GTCTACAAAGATCCTTTCAAAAAACTACGCACCCCTTTCATGTTTATACT
TGTAAATCTTGCCGTGACCGATTTAATCGTTGGTTGCGTCACACTACCGA
TTATTGTAGCTACGCATGCGCTAGAAGCCGTTGGTGAGAAAAAGAACATT
CATGTAATCATAGCACGAATAACTTACTTCACATCCAAAACGGCTAGTAT
TTTGAATTTGACTGCTTTCTGCGTTGACAGATACGGCGCTATTAATTGGG
CCATTAAATATAGGCGACTTTTAAATCGGCGTTTCTGCCTCCTAGTGTTT
TCAATGATATGGCTTTTATCCATTGGTATATCATTATTGTATTACGCAGT
TGGCTTTATTGATTTTATGATCACATTTGCAAGTATATCACTTATTCTGG
TGATGGTTATCTTCATAGTAACTTTCCGATTACTCAAAACTTTGGGAGAA
TATTCGCGAGAACGTAAAAGTATTACCGATCCAAAGCAGTCACATCGGAA
GTCAGATAGAAGGGTTACGAAACTGTTTTTGTCTATCCTGATCATGTTTT
TCGCTTGTTACACACCCGCAATTATCATGATGTATATTATCAAATTTTGC
ACTTACTGTGATTGTACAGGCCGCCACGTGATCCGCGATCTGCAATTTTT
GTTCATCATCGCAAACAGCGCCGTCAATCCCTTTTTGTGCACTATAAGAT
TGAAACCGTTCCGTCACGCTTTGGCAAATGTCTTCAATATCAAAATGCAA
ATGAACCCAAATGATTCTCCCCTGACGACGCCAAATTTGTCGGTTATTAA
ACGAATGTCACGCCGACTTTCGTCGTTATTTGAAACGAATGACGAAGATG
ATCCgaataaacttttgaaatcaggAAACGCCTCACCTTGTCTCCGAAAA
GGTTCTAACGGTGAAACTATAGTGTCTTTGTACAATAGACGTTTAAGTGA
TAATCAAGGACAACTTTTAATACCAATGACTAGAAAACAATGTGAATCAA
ACGGAACAGGTGGACATTATCTAACACCACATCCAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061252-exon-scaffold_354-1491911889:748050..750168 | TCONS_00061252-exon-scaffold_354-1491911889:748050..750168 | Clytia hemisphaerica | exon |
| TCONS_00061252-exon-scaffold_354-1510915933:748050..750168 | TCONS_00061252-exon-scaffold_354-1510915933:748050..750168 | Clytia hemisphaerica | exon |
| TCONS_00061252-exon-scaffold_354-1575043694:748050..750168 | TCONS_00061252-exon-scaffold_354-1575043694:748050..750168 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:748050..750168 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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