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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061250 ID=TCONS_00061250|Name=TCONS_00061250|organism=Clytia hemisphaerica|type=transcript|length=854bp
TTTTAAAGGGTGTACTGATGAAAGAGATTTTCTAAACAATCTAAATAAAA
TCTTTGTTATTAGTAAAATGCCATCAAgatctaaaactgttaaaagAAAA
GCTGAAGAAGATCAATCAGCAACAGACATCCCATCCtttgaaaatcatga
aaaatatattcaaaacaTGGACCAAGATGCACTTATCCTAATTATAAAGG
AAGCCTGGAATAATAAAAAAGAATCAATGCAAACCTATATGGACAGAGAA
ATCATGAAGTTAAGAAAAAATGATTGGTATAAAGCAACATCTTCTAGAGG
AATCTTGAAAAAGAATTGGAATTTGTATGATGATGATCAAACTGAAGTTA
AAgatatgaaattgaattttaaagatGATGACCTCATATTTggagttttt
ctcaaaaaggaGAAAGTGAAGGTCTCAGAAGGGGAGTTGGAAAATGATGA
GAAAGATCTTACGTTTAAAGTCTTGAATGCAGGTTGTTCTAAATGTGGAG
GTAGTGAGATTTTTAAATTCACCTTAGAAGAatcatttgataaaaagaaG
CAACGTGTATGTGTTGATGGACACATTCAGTGTCGTTGTCATACAGATTT
CTGGGATACTGATGAAGAGTTTACATGGTATGCATACCCTAAATGAAATC
TTAAAACATTTCTTCGTTTCTAACCAATATTATTACTCAACTTACCAAGT
CTTTGTCAcagtatttctttttgattttagaaagaaaactttttattttg
tacatattttattagattaaaaatgCATGTTCAAATAAATtcgtttttat
taatttttatagtttattttaagtTTATTATATCTTTATTAGATCTGATC
TTTA Run BLAST on NCBI protein sequence of TCONS_00061250-protein >TCONS_00061250-protein ID=TCONS_00061250-protein|Name=TCONS_00061250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
FKGCTDERDFLNNLNKIFVISKMPSRSKTVKRKAEEDQSATDIPSFENHE
KYIQNMDQDALILIIKEAWNNKKESMQTYMDREIMKLRKNDWYKATSSRG
ILKKNWNLYDDDQTEVKDMKLNFKDDDLIFGVFLKKEKVKVSEGELENDE
KDLTFKVLNAGCSKCGGSEIFKFTLEESFDKKKQRVCVDGHIQCRCHTDF
WDTDEEFTWYAYPK Run BLAST on NCBI transcript from alignment at scaffold_354:635882..636735 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061250 ID=TCONS_00061250|Name=TCONS_00061250|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at scaffold_354:635882..636735 (Clytia hemisphaerica)
TAAAGATCAGATCTAATAAAGATATAATAAacttaaaataaactataaaa
attaataaaaacgaATTTATTTGAACATGcatttttaatctaataaaata
tgtacaaaataaaaagttttctttctaaaatcaaaaagaaatactgTGAC
AAAGACTTGGTAAGTTGAGTAATAATATTGGTTAGAAACGAAGAAATGTT
TTAAGATTTCATTTAGGGTATGCATACCATGTAAACTCTTCATCAGTATC
CCAGAAATCTGTATGACAACGACACTGAATGTGTCCATCAACACATACAC
GTTGCttctttttatcaaatgatTCTTCTAAGGTGAATTTAAAAATCTCA
CTACCTCCACATTTAGAACAACCTGCATTCAAGACTTTAAACGTAAGATC
TTTCTCATCATTTTCCAACTCCCCTTCTGAGACCTTCACTTTCtcctttt
tgagaaaaactccAAATATGAGGTCATCatctttaaaattcaatttcata
tcTTTAACTTCAGTTTGATCATCATCATACAAATTCCAATTCTTTTTCAA
GATTCCTCTAGAAGATGTTGCTTTATACCAATCATTTTTTCTTAACTTCA
TGATTTCTCTGTCCATATAGGTTTGCATTGATTCTTTTTTATTATTCCAG
GCTTCCTTTATAATTAGGATAAGTGCATCTTGGTCCAtgttttgaatata
tttttcatgattttcaaaGGATGGGATGTCTGTTGCTGATTGATCTTCTT
CAGCTTTTcttttaacagttttagatcTTGATGGCATTTTACTAATAACA
AAGATTTTATTTAGATTGTTTAGAAAATCTCTTTCATCAGTACACCCTTT
AAAA Coding sequence (CDS) from alignment at scaffold_354:635882..636735 >TCONS_00061250 ID=TCONS_00061250|Name=TCONS_00061250|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_354:635882..636735 (Clytia hemisphaerica)
TCATTTAGGGTATGCATACCATGTAAACTCTTCATCAGTATCCCAGAAAT
CTGTATGACAACGACACTGAATGTGTCCATCAACACATACACGTTGCttc
tttttatcaaatgatTCTTCTAAGGTGAATTTAAAAATCTCACTACCTCC
ACATTTAGAACAACCTGCATTCAAGACTTTAAACGTAAGATCTTTCTCAT
CATTTTCCAACTCCCCTTCTGAGACCTTCACTTTCtcctttttgagaaaa
actccAAATATGAGGTCATCatctttaaaattcaatttcatatcTTTAAC
TTCAGTTTGATCATCATCATACAAATTCCAATTCTTTTTCAAGATTCCTC
TAGAAGATGTTGCTTTATACCAATCATTTTTTCTTAACTTCATGATTTCT
CTGTCCATATAGGTTTGCATTGATTCTTTTTTATTATTCCAGGCTTCCTT
TATAATTAGGATAAGTGCATCTTGGTCCAtgttttgaatatatttttcat
gattttcaaaGGATGGGATGTCTGTTGCTGATTGATCTTCTTCAGCTTTT
cttttaacagttttagatcTTGATGGCATTTTACTAATAACAAAGATTTT
ATTTAGATTGTTTAGAAAATCTCTTTCATCAGTACACCCTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061250-exon-scaffold_354-1491911889:635882..636735 | TCONS_00061250-exon-scaffold_354-1491911889:635882..636735 | Clytia hemisphaerica | exon |
| TCONS_00061250-exon-scaffold_354-1510915933:635882..636735 | TCONS_00061250-exon-scaffold_354-1510915933:635882..636735 | Clytia hemisphaerica | exon |
| TCONS_00061250-exon-scaffold_354-1575043694:635882..636735 | TCONS_00061250-exon-scaffold_354-1575043694:635882..636735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:635882..636735 . |
Blast
The following BLAST results are available for this feature:
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