TCONS_00061235 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061235
Unique NameTCONS_00061235
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061235 ID=TCONS_00061235|Name=TCONS_00061235|organism=Clytia hemisphaerica|type=transcript|length=654bp
ttttttttggaccaccctggattatTGACCCCGTTTTACCTACCATCCAG
GATTtccacctcattttactgaccgccctggattttttattttccagacg
tcacacctcctcaatatagggggtacagactactTCTGGAATAGTCCATT
TTGTACAGACCTTTATTAACAGGAGGtggaaaaagaagattttttacacG
CGCTACTCATTCTTTTCCCTGGGGTGggcatccatatagtacgtctattg
tttgaatgacctcattctattgttctctgcgtacaaagAAGGAGAGGGTG
TCAAAtctttggaaaatctttgcgtactaTTTGGATTCACTGAAGAACCT
TTACAGTCATTGAACAAGGTCTTTTCAATTCTTTCCTCAAAGTGGCTGAA
ATTATATatatgatacattttttattttcaaaatctagGCATTCACTCCA
TTTATAAATTATGCTAATTTTGATTATATACTCTCGTGTAACGCTATACT
TGTAATGTTTATATTATTAGGGGGAATAATACAACTTAATGACGAGTTTG
ttttgtgataaaaaaagtataaaattggtatttttcttgaaaaaaaaatt
gtatctgtgtattgtttcatttttgttgGCGTCTAATGTCTTTCAAGTGA
CGGC
Run BLAST on NCBI

transcript from alignment at scaffold_354:139990..140643

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061235 ID=TCONS_00061235|Name=TCONS_00061235|organism=Clytia hemisphaerica|type=transcript|length=654bp|location=Sequence derived from alignment at scaffold_354:139990..140643 (Clytia hemisphaerica)
GCCGTCACTTGAAAGACATTAGACGCcaacaaaaatgaaacaatacacag
atacaatttttttttcaagaaaaataccaattttatactttttttatcac
aaaaCAAACTCGTCATTAAGTTGTATTATTCCCCCTAATAATATAAACAT
TACAAGTATAGCGTTACACGAGAGTATATAATCAAAATTAGCATAATTTA
TAAATGGAGTGAATGCctagattttgaaaataaaaaatgtatcatatATA
TAATTTCAGCCACTTTGAGGAAAGAATTGAAAAGACCTTGTTCAATGACT
GTAAAGGTTCTTCAGTGAATCCAAAtagtacgcaaagattttccaaagaT
TTGACACCCTCTCCTTctttgtacgcagagaacaatagaatgaggtcatt
caaacaatagacgtactatatggatgccCACCCCAGGGAAAAGAATGAGT
AGCGCgtgtaaaaaatcttctttttccaCCTCCTGTTAATAAAGGTCTGT
ACAAAATGGACTATTCCAGAagtagtctgtaccccctatattgaggaggt
gtgacgtctggaaaataaaaaatccagggcggtcagtaaaatgaggtgga
AATCCTGGATGGTAGGTAAAACGGGGTCAataatccagggtggtccaaaa
aaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038405XLOC_038405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061235-exon-scaffold_354-1491911889:139990..140643TCONS_00061235-exon-scaffold_354-1491911889:139990..140643Clytia hemisphaericaexon
TCONS_00061235-exon-scaffold_354-1510915933:139990..140643TCONS_00061235-exon-scaffold_354-1510915933:139990..140643Clytia hemisphaericaexon
TCONS_00061235-exon-scaffold_354-1575043694:139990..140643TCONS_00061235-exon-scaffold_354-1575043694:139990..140643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:139990..140643 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.29143	6.45281	5.86749	5.47548	38.5975	25.3178	31.2623	32.0502	20.8267	18.3909	14.539	16.9909	10.0213	9.63632	7.15276	6.16996	12.0297	10.1217	3.98324	6.11923	11.7166	11.0539	7.40432	7.9782	5.05025	7.86855	10.3853	8.28345	8.76039	7.66327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061235 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top