TCONS_00061233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061233
Unique NameTCONS_00061233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061233 ID=TCONS_00061233|Name=TCONS_00061233|organism=Clytia hemisphaerica|type=transcript|length=378bp
CGGTCTGTTTAAAATGGCATTAGGATACATTGCTTTAATAGTTACAGCAA
CCAGAGTGGTATCTACATCTTTGATTGATAAAAAAGAGCTGATATACCTT
GTTATATCGAAAGTAACATACGTAAAGATCAACAAATCTTTATTGAGCGA
TAAtacaactttttcatttttatcaatacAACGGCCTTGGAAATTTACTG
AATCTTGGTTGATTAGATCTAGTAAAATGTTAGAGACTGCATTACAAGAA
CGACCACCAACATCCACGGTACACAGGCTAGAATCACTTTTTGTTCTctt
caatgtttttttcaatCGTGCTTCATTGTATGCAGCATTACGGCAATGAG
TTGTGAAATCTTTCGGACAGTCACTGAT
Run BLAST on NCBI

protein sequence of TCONS_00061233-protein

>TCONS_00061233-protein ID=TCONS_00061233-protein|Name=TCONS_00061233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
ISDCPKDFTTHCRNAAYNEARLKKTLKRTKSDSSLCTVDVGGRSCNAVSN
ILLDLINQDSVNFQGRCIDKNEKVVLSLNKDLLIFTYVTFDITRYISSFL
SIKDVDTTLVAVTIKAMYPNAILNRP
Run BLAST on NCBI

transcript from alignment at scaffold_354:116798..117175

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061233 ID=TCONS_00061233|Name=TCONS_00061233|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_354:116798..117175 (Clytia hemisphaerica)
ATCAGTGACTGTCCGAAAGATTTCACAACTCATTGCCGTAATGCTGCATA
CAATGAAGCACGattgaaaaaaacattgaagAGAACAAAAAGTGATTCTA
GCCTGTGTACCGTGGATGTTGGTGGTCGTTCTTGTAATGCAGTCTCTAAC
ATTTTACTAGATCTAATCAACCAAGATTCAGTAAATTTCCAAGGCCGTTg
tattgataaaaatgaaaaagttgtaTTATCGCTCAATAAAGATTTGTTGA
TCTTTACGTATGTTACTTTCGATATAACAAGGTATATCAGCTCTTTTTTA
TCAATCAAAGATGTAGATACCACTCTGGTTGCTGTAACTATTAAAGCAAT
GTATCCTAATGCCATTTTAAACAGACCG

Coding sequence (CDS) from alignment at scaffold_354:116798..117175

>TCONS_00061233 ID=TCONS_00061233|Name=TCONS_00061233|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_354:116798..117175 (Clytia hemisphaerica)
ATCAGTGACTGTCCGAAAGATTTCACAACTCATTGCCGTAATGCTGCATA
CAATGAAGCACGattgaaaaaaacattgaagAGAACAAAAAGTGATTCTA
GCCTGTGTACCGTGGATGTTGGTGGTCGTTCTTGTAATGCAGTCTCTAAC
ATTTTACTAGATCTAATCAACCAAGATTCAGTAAATTTCCAAGGCCGTTg
tattgataaaaatgaaaaagttgtaTTATCGCTCAATAAAGATTTGTTGA
TCTTTACGTATGTTACTTTCGATATAACAAGGTATATCAGCTCTTTTTTA
TCAATCAAAGATGTAGATACCACTCTGGTTGCTGTAACTATTAAAGCAAT
GTATCCTAATGCCATTTTAAACAGACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038403XLOC_038403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061233-exon-scaffold_354-1491911889:116798..117175TCONS_00061233-exon-scaffold_354-1491911889:116798..117175Clytia hemisphaericaexon
TCONS_00061233-exon-scaffold_354-1510915933:116798..117175TCONS_00061233-exon-scaffold_354-1510915933:116798..117175Clytia hemisphaericaexon
TCONS_00061233-exon-scaffold_354-1575043694:116798..117175TCONS_00061233-exon-scaffold_354-1575043694:116798..117175Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061233-proteinTCONS_00061233-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:116798..117175 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.837697	0.144993	0	0	0	0.323053	0.446315	1.16759	0.608909	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top