TCONS_00061232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061232
Unique NameTCONS_00061232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061232 ID=TCONS_00061232|Name=TCONS_00061232|organism=Clytia hemisphaerica|type=transcript|length=817bp
CTTGTAACCTttgttttatactttttttagaaaatgcaATTAAACAAATA
TTGAAGTAATAAATGGCTtagcaaaatttttttgggatCCTATGGTGGAT
GGATTGATTTTGATGGCTAAGAAGAACCAATTACTATTGAGAAAGGAATT
CCCATCAaggtttgaaaatttgaaagtcaTTGATGGCAAACCGATTACGA
GGGTGAAAGGGTGACAacggaaaaatggaaaaatgatgTAAAAGATTATG
TTCTATTGTCTGGATTATGATGTTTACTTCCCCGATGACAATAACCGCTT
GTTCATATCTTTTTTTTGATACTTACTTCTCTGGTGATGTGATAATCAAA
GAATTAGTATTTAGAGATTTTATGCATGAGCTGATAAATAATTTGTGGAT
GAGCTTGAATGTTTGTAAGAGACATTGAAAACTTTGATATCTCATGTTGC
CACAAATCGACCAACGGAGTCTGTTTCGAAAATACGTATAGGTATCATCC
CCTTTGAAAGTGTGAGGAGACCGTGTTTGAGTTTACCAAGAAGGATTGTT
GCAAAATGGCtcaagtcgttgcattgacatTCTCCGGTGTTTAATTCAAA
CCGTTCGTAGCTATTTAAACGTACTTTGTATTTTCCCCTAttttttttca
acgtttattgACTTAAAGGGGAAATTTcgtctgtttttttctttctttaa
gttCCCAATTCAAccataccagtggataccccttaaaacccacaataaaa
agtggtaccctctatctcattgtttagttggagtgtaaggctgaaacttt
ttgtgttgaaagtacgt
Run BLAST on NCBI

transcript from alignment at scaffold_354:95092..95908

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061232 ID=TCONS_00061232|Name=TCONS_00061232|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at scaffold_354:95092..95908 (Clytia hemisphaerica)
acgtactttcaacacaaaaagtttcagccttacactccaactaaacaatg
agatagagggtaccactttttattgtgggttttaaggggtatccactggt
atggTTGAATTGGGaacttaaagaaagaaaaaaacagacgAAATTTCCCC
TTTAAGTcaataaacgttgaaaaaaaaTAGGGGAAAATACAAAGTACGTT
TAAATAGCTACGAACGGTTTGAATTAAACACCGGAGAatgtcaatgcaac
gacttgaGCCATTTTGCAACAATCCTTCTTGGTAAACTCAAACACGGTCT
CCTCACACTTTCAAAGGGGATGATACCTATACGTATTTTCGAAACAGACT
CCGTTGGTCGATTTGTGGCAACATGAGATATCAAAGTTTTCAATGTCTCT
TACAAACATTCAAGCTCATCCACAAATTATTTATCAGCTCATGCATAAAA
TCTCTAAATACTAATTCTTTGATTATCACATCACCAGAGAAGTAAGTATC
AAAAAAAAGATATGAACAAGCGGTTATTGTCATCGGGGAAGTAAACATCA
TAATCCAGACAATAGAACATAATCTTTTAcatcatttttccatttttccg
tTGTCACCCTTTCACCCTCGTAATCGGTTTGCCATCAAtgactttcaaat
tttcaaacctTGATGGGAATTCCTTTCTCAATAGTAATTGGTTCTTCTTA
GCCATCAAAATCAATCCATCCACCATAGGatcccaaaaaaattttgctaA
GCCATTTATTACTTCAATATTTGTTTAATtgcattttctaaaaaaagtat
aaaacaaAGGTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038402XLOC_038402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061232-exon-scaffold_354-1491911889:95092..95908TCONS_00061232-exon-scaffold_354-1491911889:95092..95908Clytia hemisphaericaexon
TCONS_00061232-exon-scaffold_354-1510915933:95092..95908TCONS_00061232-exon-scaffold_354-1510915933:95092..95908Clytia hemisphaericaexon
TCONS_00061232-exon-scaffold_354-1575043694:95092..95908TCONS_00061232-exon-scaffold_354-1575043694:95092..95908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:95092..95908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.8662	51.9364	47.8965	48.0674	17.9628	11.4697	11.8414	12.4184	10.6779	10.874	7.23899	7.53885	5.42767	4.90422	4.44459	5.84954	9.92973	9.07376	3.92591	4.88371	7.99176	8.06682	27.9735	24.7629	7.91291	6.66629	9.02541	5.76852	13.329	16.2628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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