TCONS_00061213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061213
Unique NameTCONS_00061213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061213 ID=TCONS_00061213|Name=TCONS_00061213|organism=Clytia hemisphaerica|type=transcript|length=877bp
AAGGTAAAAGAGACAAAAGTTGGGGGCTAAATTGGGGGCATTTGTCTCAA
TTATCCTGTATTTCAATGCAGCTTTGCTAGACTAAACAAGACAAACCAAA
ACATAATGACATCACAGTGAATTGGTCTAGAAGTTGTNgacccccggatt
gttcatcgcataatttctacgggaaatcgaaagtaatttcattctgCTTG
TGATGTTTCACGGCTGTTTCAGTAAGCCAAAAATCGAACGTCTGGAATCG
AACCAACAcaaaaattgacgaaaatttACCTTACTCATTGATCTGTAGGT
CTAGCTCTGAAGATCATTttaaaattctgtaaaaagccTCTTGAAGCCGA
AAGATAGTTCTTTCCGAATNACATAGGTTCACACAAAATTTTCCTCGCCT
CGAGAAAAATTTCGTACggcttttttcatgttttggtcacgtgatcgaCG
CCTTCCATTTCTCGAAAAACAAGCCAATCAGAGTTGACGATTTTCCCGCG
GCACATTTTGATTGGCCGATTTCAGCGTAACGGGTGGCAACATGGTAGCC
AAAGAAGCGATAATTTCATTCAACTTGCTATTTTGGTGGTGGATGGAGGT
tttgtcaaactttttcaaGTCTTTGATCTGGGGGATGGAGGGTTCAACAA
CCAACAACTGACGACCGAGAAAGCTAAGTTCGACCAAAAAAGTTACACGA
AATGAAAGACTTGACCCTGGATTTTAAGGACGACTTGTGCGGTCCTGCAG
CAACATGTAAATTTATGGCTGGATAGTTGGACTCCTTGACTAATACTGCT
CAGCTGCTTGCTGATTTCTCCATATCCAAGTGTAGAAGATGGAAATATAC
CTGTTGTCATGCTGGAATCGTATCANN
Run BLAST on NCBI

transcript from alignment at scaffold_354:1068620..1069929-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061213 ID=TCONS_00061213|Name=TCONS_00061213|organism=Clytia hemisphaerica|type=transcript|length=1310bp|location=Sequence derived from alignment at scaffold_354:1068620..1069929- (Clytia hemisphaerica)
AAGGTAAAAGAGACAAAAGTTGGGGGCTAAATTGGGGGCATTTGTCTCAA
TTATCCTGTATTTCAATGCAGCTTTGCTAGACTAAACAAGACAAACCAAA
ACATAATGACATCACAGTGAATTGGTCTAGAAGTTGTNGACCCCCGGATT
GTTCATCGCATAATTTCTACGGGAAATCGAAAGTAATTTCATTCTGCTTG
TGATGTTTCACGGCTGTTTCAGTAAGCCAAAAATCGAACGTCTGGAATCG
AACCAACACAAAAATTGACGAAAATTTACCTTACTCATTGATCTGTAGGT
CTAGCTCTGAAGATCATTTTAAAATTCTGTAAAAAGCCTCTTGAAGCCGA
AAGATAGTTCTTTCCGAATNACATAGGTTCACACAAAATTTTCCTCGCCT
CGAGAAAAATTTCGTACGGCTTTTTTCATGTTTTGGTCACGTGATCGACG
CCTTCCATTTCTCGAAAAACAAGCCAATCAGAGTTGACGATTTTCCCGCG
GCACATTTTGATTGGCCGATTTCAGCGTAACGGGTGGCAACATGGTAGCC
AAAGAAGCGATAATTTCATTCAACTTGCTATTTTGGTGGTGGATGGAGGT
TTTGTCAAACTTTTTCAAGTTAAGTGAATCGATCTAATTTTTAAACTTCA
AAAAGCTTTTTAGCAATTTGATTGGCTTGTTTTTAATGTTTCTTTTGGAT
AGAACCAGGGGTTGAGTGACTTCAAATCTCTAAGATAGCCCTTCAAACAA
TCTTACTTCTTCCCAAATATTTTCTAGAATTTCTGTTGCAAATCACCTCA
TCAGCCTCTAATATTCTGACTTGTGGTAATAGATACTAGATTAGAATTTC
ATAGCTGGATTTTGTTTTCCTTCAATATCTTTTCTTTCTTCTGTTTTCTT
CAGGTCTTTGATCTGGGGGATGGAGGGTTCAACAACCAACAACTGACGAC
CGAGAAAGCTAAGTTCGACCAAAAAAGTTACACGAAATGAAAGACTTGAC
CCTGGATTTTAAGGTAGGACTTATTTGAAATATTCTTAAGAGAATTAAGG
TACTATTAGTTCTTTTCAAGGCTGAGGGAAATGGTGATTGGGTATGAACT
GATGAAAATAGACATAGTTTTTTTGTTGTTTTTTATTTAAAATGTTTTCT
TCATTTTGTAGGACGACTTGTGCGGTCCTGCAGCAACATGTAAATTTATG
GCTGGATAGTTGGACTCCTTGACTAATACTGCTCAGCTGCTTGCTGATTT
CTCCATATCCAAGTGTAGAAGATGGAAATATACCTGTTGTCATGCTGGAA
TCGTATCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038393XLOC_038393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061213-exon-scaffold_354-1575043694:1069312..1069929TCONS_00061213-exon-scaffold_354-1575043694:1069312..1069929Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1575043694:1068917..1069026TCONS_00061213-exon-scaffold_354-1575043694:1068917..1069026Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1575043694:1068620..1068768TCONS_00061213-exon-scaffold_354-1575043694:1068620..1068768Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1510915933:1069312..1069929TCONS_00061213-exon-scaffold_354-1510915933:1069312..1069929Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1510915933:1068917..1069026TCONS_00061213-exon-scaffold_354-1510915933:1068917..1069026Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1510915933:1068620..1068768TCONS_00061213-exon-scaffold_354-1510915933:1068620..1068768Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1491911889:1069312..1069929TCONS_00061213-exon-scaffold_354-1491911889:1069312..1069929Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1491911889:1068917..1069026TCONS_00061213-exon-scaffold_354-1491911889:1068917..1069026Clytia hemisphaericaexon
TCONS_00061213-exon-scaffold_354-1491911889:1068620..1068768TCONS_00061213-exon-scaffold_354-1491911889:1068620..1068768Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:1068620..1069929 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4773	1.76827	2.01211	2.02869	16.3096	14.5456	22.066	26.4695	21.6589	19.4747	15.8717	22.4322	20.4966	25.1306	14.0965	11.6207	15.9327	10.0594	14.9286	17.0525	6.7263	8.69963	6.67262	6.42829	19.8007	18.3344	5.56835	4.92492	13.7823	11.7468
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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