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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061209 ID=TCONS_00061209|Name=TCONS_00061209|organism=Clytia hemisphaerica|type=transcript|length=2658bpRun BLAST on NCBI protein sequence of TCONS_00061209-protein >TCONS_00061209-protein ID=TCONS_00061209-protein|Name=TCONS_00061209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp MSSRITQYKHKALDNSELRRRREEAGVQIRKAKREEQLQKRRNVQPDLEERun BLAST on NCBI transcript from alignment at scaffold_354:923945..945010- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061209 ID=TCONS_00061209|Name=TCONS_00061209|organism=Clytia hemisphaerica|type=transcript|length=21066bp|location=Sequence derived from alignment at scaffold_354:923945..945010- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:923945..945010- >TCONS_00061209 ID=TCONS_00061209|Name=TCONS_00061209|organism=Clytia hemisphaerica|type=CDS|length=18684bp|location=Sequence derived from alignment at scaffold_354:923945..945010- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061209 vs. Swiss-Prot (Human)
Match: IMA7 (Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1) HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0 Identity = 288/500 (57.60%), Postives = 365/500 (73.00%), Query Frame = 3
Query: 234 KMSSRITQYKHKALDNSELRRRREEAGVQIRKAKREEQLQKRRNVQPDLEESPGLD------------GVSLLN-ELPNILNSLMSNDPVQATFMLRKLLSQDTNPPIMEVIEA-GAIPILVQLLQRTDNHILQFEAAWALTNVASGTSEQTAVIVEAGAVPIFIHLLRSPHEDVREQAVWALGNIAGDNPQCRNFCLECGIMEPLLQLLSQDIAISTLRNAVWCLSNLCRGKSPPPEFSQVSPSLPTLAKLLFHEDKFVLTDTCWAVAYLSDGPNKKIQAVIDVGVCRRLVELLEHPRSKVVSAALRAVGNIVTGDDLQTQVVLNCNVLPTLISLLNYPKEHIQKETCWALSNITAGNKQQIQAVIDANIVPSVLNTLSNADYKTRKEAAWVVANITSGGSNQHIRYVASLDALKPLSDLLSVDDPKIIIVSLTAIDNILRIGEQIVKEAQNSIVNPYALQIEECFGLDKIEYLQQHRNKEIYDKAFNIIEKYFHDSED 1691
K + R+ YK+ AL+ E+RRRREE G+Q+RK KRE+QL KRRNV+ EE+ D G S++ E+ +L S S+ + T RKLLS++ +PPI EVI + V+ L+R +N LQFEAAWALTN+ASGTS+QT +++EAGAVPIFI LL S EDV+EQAVWALGNIAGD+ CR++ L C I+ PLL LL++ ++ RNAVW LSNLCRGK+PPPEF++VSP LP L++LLF D +L D CWA++YLSDGPN+KIQAVID GVCRRLVELL H KV S ALRAVGNIVTGDD+QTQV+LNC+ LP L+ LL+ PKE I+KE CW +SNITAGN+ QIQAVIDANI P ++ L A+++TRKEAAW + N TSGG+ + IRY+ SL +KPL DLL+V D KI+ V+L ++NILR+GEQ K + S VNPY IEE +GLDKIE+LQ H N+EIY KAF++IE YF +D
Sbjct: 9 KDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRS-GSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDD 507 The following BLAST results are available for this feature:
BLAST of TCONS_00061209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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