TCONS_00061207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061207
Unique NameTCONS_00061207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061207 ID=TCONS_00061207|Name=TCONS_00061207|organism=Clytia hemisphaerica|type=transcript|length=1401bp
AAAATATAACATTGTCAAGATCTTATCTCTTATGaaaaaattataaCAAG
ACGGGTTATATATGACAAGGTATAAACGTGAGCTATGGATAAAGTTATAG
GAcaatcattcaaagaaaatGGATATTATACACCAATCAGCATTTTAACT
GCAGAAGAAGCTGCAAAAacattacaaaatttcaatctgTATAAAGACAC
AGTTGGTACGAATGGTAAAATCATTGGTGATTTTCGCTTTCAAGGTCATT
TATTGATGAGATGGGTGTGGGATTTGATTCGTCATCCAAAAATTGTGTCA
GTTGTGAAAGAAACACTTGGCACAGAAAATATTCTTTGCTGGGGTACAGA
TTTCAATATTAAACCTGGAAAATCTCAAGgATATTTTACTTGGCACCAAG
ACGCCACTTATTGCGGTTTGACGCCGATTAGCAAAATGTTGACAGCTTGG
ATTGCTATCACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTCTGCC
AAAAACACATTCAAAACAACTTGACCATATTGAAAAACAACAAGAACACA
ATATGTTATCTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAG
AGGCTCTCCACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTTT
GCATCATAGCTATATGGTTCACGCTTCAGGACCTAATAAAACTGAAACAC
CAAGAATCGGTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAG
CCTCGTTTTCCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACA
ACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACG
ATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTAT
TTCCTCGGAAAATCGATCAAATCCTTCAAGTAGATACAGTTGAACTTaaa
tctctctctaattcaatcttCAAGGGGCCAAAAATtctcttcgaattaga
gaaatattcgaattagagagagtaatTCTAAACCACTTTTCTCCTGAGCA
GGCCATTTTTTAAGTTCGaaatacagaaagattcgaataattaGAGAGAT
TTACTTGTACTACAATACACAAACATTATCAGGAAACAAACTTTACatgg
tttttataagaataattttttgtAAGCCTCATTATGTAGTAAAATTAGTT
CGATTCAAGTTAATGATATGAAAGTTTCATCAAATcatattacatgtttt
ttataagcattccACTTaacatatctaggctcagatatggcaaaAGTTTA
AGCATATGGTAAACATTACTTTGGactatattttctgattttggcaaatt
tgatTAGAATATAGGCATCATTCtagcatttttcagctttgcCTATCTCT
C
Run BLAST on NCBI

protein sequence of TCONS_00061207-protein

>TCONS_00061207-protein ID=TCONS_00061207-protein|Name=TCONS_00061207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=282bp
MDKVIGQSFKENGYYTPISILTAEEAAKTLQNFNLYKDTVGTNGKIIGDF
RFQGHLLMRWVWDLIRHPKIVSVVKETLGTENILCWGTDFNIKPGKSQGY
FTWHQDATYCGLTPISKMLTAWIAITPSTTESGCLCFLPKTHSKQLDHIE
KQQEHNMLSLGQEIADQNFIEKRLSTQVYAELVPGQMSLHHSYMVHASGP
NKTETPRIGLAIRYLAAEVRKEPRFPSMERVTLISGIKQHDFFEYEHAPV
EDFSDDAFQEHKLSIERKKENYFLGKSIKSFK
Run BLAST on NCBI

transcript from alignment at scaffold_354:903803..906294-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061207 ID=TCONS_00061207|Name=TCONS_00061207|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at scaffold_354:903803..906294- (Clytia hemisphaerica)
AAAATATAACATTGTCAAGATCTTATCTCTTATGGTACGTTCAATAATTA TGTCTTGTCTCAAAATATCAAAGAGTGTTTTTTTGTCAGTTTTGCATGTA AGCCAGTGGCGTGGTGGCAGGGGGGGGCAGGGGGCCAGGCCCCCCCCCCA GCGGAGCCCTTTTGAGAAGGGGCGCCCAAAAATAAGGGACGTTAAGAAGG ATTTTTCAGACGCCCATATCGAAAGATTGACAAATGAAAAAACAAAAATG GCGCCCCTCATCACCTCAAAAACTCAAAATTTTCTGGCTCGCTTCGCTCG CAAACTCCCTATTTTGTGTTCATAATGAGCGTATAGAGAGGGGCGCCAAA TAAAAATAGTCTTTGAAAAGGGCGCCATATTTGCCTTGGCCACCCCAGAG AAATTTTCCCACCACGCCACTGTGTAAGCTTTTCATATAAAAGCAGCCAT GTTGATAAAAGTGTATTAATGATAGATCTATCATGTTTACTTTTCAGAAA AAATTATAACAAGACGGGTTATATATGACAAGGTATAAACGTGAGCTATG GATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATACACCAAT CAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAATTTCAATC TGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGATTTTCGC TTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTCGTCATCC AAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAATATTCTTT GCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAGGTATCAGT TGTTACTATAGAGAGTTCTTTTTTAATAATTTTCCCCTGTCACAAACGCC CGCGTGATAATACTCTTGTCCGTCCGTCTCCACAGGTTAAATTTTTAGTT TAGTTTAGTTTCTTGTTTCTATCCACATTGCCGAAAAATTCTAACCTACT AAATGAGACTAAAGTGGTGTTTCTAAACACCTCTGTATCATAAAAAGAAC TGCTTTATTTCTAATACACGTTTTTTTTTTTTAAGAAACACACTTTTAAG AAACATGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTAAGAAACATG CTAAGGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAACATTT TTTAATTCGGTTTTTTAAGAACCTTCCAATCCAGCCTTCCATGAGGCTGA TTATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAAGCGCAAAAGG CCGATTTTTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAA ATAAAAAAAACGTGTACCATTTACGGGGTGCATAGCTCAAACTTTGACTG AACATTTTTTTTCTCTTTAGGATATTTTACTTGGCACCAAGACGCCACTT ATTGCGGTTTGACGCCGATTAGCAAAATGTTGACAGCTTGGATTGCTATC ACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTCTGCCAAAAACACA TTCAAAACAACTTGACCATATTGAAAAACAACAAGAACACAATATGTTAT CTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAGAGGCTCTCC ACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTTTGCATCATAG CTATATGGTTCACGCTTCAGGACCTAATAAAACTGAAACACCAAGAATCG GTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAGCCTCGTTTT CCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACAACATGATTT TTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACGATGCTTTTC AAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTATTTCCTCGGA AAATCGATCAAATCCTTCAAGTAGATACAGTTGAACTTAAATCTCTCTCT AATTCAATCTTCAAGGGGCCAAAAATTCTCTTCGAATTAGAGAAATATTC GAATTAGAGAGAGTAATTCTAAACCACTTTTCTCCTGAGCAGGCCATTTT TTAAGTTCGAAATACAGAAAGATTCGAATAATTAGAGAGATTTACTTGTA CTACAATACACAAACATTATCAGGAAACAAACTTTACATGGTTTTTATAA GAATAATTTTTTGTAAGCCTCATTATGTAGTAAAATTAGTTCGATTCAAG TTAATGATATGAAAGTTTCATCAAATCATATTACATGTTTTTTATAAGCA TTCCACTTAACATATCTAGGCTCAGATATGGCAAAAGTTTAAGCATATGG TAAACATTACTTTGGACTATATTTTCTGATTTTGGCAAATTTGATTAGAA TATAGGCATCATTCTAGCATTTTTCAGCTTTGCCTATCTCTC

Coding sequence (CDS) from alignment at scaffold_354:903803..906294-

>TCONS_00061207 ID=TCONS_00061207|Name=TCONS_00061207|organism=Clytia hemisphaerica|type=CDS|length=1698bp|location=Sequence derived from alignment at scaffold_354:903803..906294- (Clytia hemisphaerica)
GATATTTTACTTGGCACCAAGACGCCACTTATTGCGGTTTGACGCCGATT
AGCAAAATGTTGACAGCTTGGATTGCTATCACACCTTCAACAACCGAAAG
TGGTTGTTTATGCTTTCTGCCAAAAACACATTCAAAACAACTTGACCATA
TTGAAAAACAACAAGAACACAATATGTTATCTCTTGGTCAAGAAATAGCT
GATCAAAATTTCATCGAAAAGAGGCTCTCCACACAAGTCTACGCAGAACT
TGTACCAGGACAAATGTCTTTGCATCATAGCTATATGGTTCACGCTTCAG
GACCTAATAAAACTGAAACACCAAGAATCGGTTTAGCAATTCGATATTTA
GCAGCAGAAGTTCGTAAAGAGCCTCGTTTTCCCAGCATGGAGCGAGTAAC
TCTGATCAGCGGTATCAAACAACATGATTTTTTCGAATATGAACATGCCC
CTGTGGAAGATTTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATC
GAGCGAAAAAAGGAGAATTATTTCCTCGGAAAATCGATCAAATCCTTCAA
GTAGATGGATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATA
CACCAATCAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAAT
TTCAATCTGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGA
TTTTCGCTTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTC
GTCATCCAAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAAT
ATTCTTTGCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAGG
ATATTTTACTTGGCACCAAGACGCCACTTATTGCGGTTTGACGCCGATTA
GCAAAATGTTGACAGCTTGGATTGCTATCACACCTTCAACAACCGAAAGT
GGTTGTTTATGCTTTCTGCCAAAAACACATTCAAAACAACTTGACCATAT
TGAAAAACAACAAGAACACAATATGTTATCTCTTGGTCAAGAAATAGCTG
ATCAAAATTTCATCGAAAAGAGGCTCTCCACACAAGTCTACGCAGAACTT
GTACCAGGACAAATGTCTTTGCATCATAGCTATATGGTTCACGCTTCAGG
ACCTAATAAAACTGAAACACCAAGAATCGGTTTAGCAATTCGATATTTAG
CAGCAGAAGTTCGTAAAGAGCCTCGTTTTCCCAGCATGGAGCGAGTAACT
CTGATCAGCGGTATCAAACAACATGATTTTTTCGAATATGAACATGCCCC
TGTGGAAGATTTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATCG
AGCGAAAAAAGGAGAATTATTTCCTCGGAAAATCGATCAAATCCTTCAAG
TAGATGGATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATAC
ACCAATCAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAATT
TCAATCTGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGAT
TTTCGCTTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTCG
TCATCCAAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAATA
TTCTTTGCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038388XLOC_038388Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061207-proteinTCONS_00061207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061207-exon-scaffold_354-1575043694:906261..906294TCONS_00061207-exon-scaffold_354-1575043694:906261..906294Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1575043694:905453..905797TCONS_00061207-exon-scaffold_354-1575043694:905453..905797Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1575043694:903803..904824TCONS_00061207-exon-scaffold_354-1575043694:903803..904824Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1510915933:906261..906294TCONS_00061207-exon-scaffold_354-1510915933:906261..906294Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1510915933:905453..905797TCONS_00061207-exon-scaffold_354-1510915933:905453..905797Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1510915933:903803..904824TCONS_00061207-exon-scaffold_354-1510915933:903803..904824Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1491911889:906261..906294TCONS_00061207-exon-scaffold_354-1491911889:906261..906294Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1491911889:905453..905797TCONS_00061207-exon-scaffold_354-1491911889:905453..905797Clytia hemisphaericaexon
TCONS_00061207-exon-scaffold_354-1491911889:903803..904824TCONS_00061207-exon-scaffold_354-1491911889:903803..904824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:903803..906294 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0515422 0 0.0797117 5.53865 4.505 29.1006 26.2772 17.9654 18.9396 10.2663 6.11663 0.874808 0.922209 1.58766 1.82822 1.35938 3.80307 0.73643 0.391785 1.79554 1.34352 0.645531 0.811154 0.490575 1.23291 0.845726 0.325881 0.496278 0.16159
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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