TCONS_00061206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061206
Unique NameTCONS_00061206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1741

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061206 ID=TCONS_00061206|Name=TCONS_00061206|organism=Clytia hemisphaerica|type=transcript|length=1741bp
AAAATATAACATTGTCAAGATCTTATCTCTTATGaaaaaattataaCAAG
ACGGGTTATATATGACAAGGTATAAACGTGAGCTATGGATAAAGTTATAG
GAcaatcattcaaagaaaatGGATATTATACACCAATCAGCATTTTAACT
GCAGAAGAAGCTGCAAAAacattacaaaatttcaatctgTATAAAGACAC
AGTTGGTACGAATGGTAAAATCATTGGTGATTTTCGCTTTCAAGGTCATT
TATTGATGAGATGGGTGTGGGATTTGATTCGTCATCCAAAAATTGTGTCA
GTTGTGAAAGAAACACTTGGCACAGAAAATATTCTTTGCTGGGGTACAGA
TTTCAATATTAAACCTGGAAAATCTCAAGGATATTTTACTTGGCACCAAG
ACGCCACTTATTGCGGTTTGACGCCGATTAACAAAATGTTGACAGCTTGG
ATTGCTATTACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTTTACC
AAAAACACATTCAAAACGACTTGATCATATTGAAAAACAGCAAGAACACA
ATATGTTATCTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAG
AGGCTCTCCACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTCT
GCATCATAGCTATATGGTTCACGCTTCAGGACCTAATGAAACTGAAACAC
CAAGAATCGGTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAG
CCTCGTTTTCCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACA
ACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACG
ATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTAT
TTCCTCGGAAAATCGATCAAATCTTTTAAGTAGNGTAACTCTGATCAGCG
GTATCAAACAACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGAT
TTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAGAAAA
GGAGAATTATTTCTTCGGAAAATCGATCAAATCTTTTAAGTAGGTTCAGT
TGAATCTCTCTCTAAAAATCAGTTAGATAATATTCAACACCCCCAtctca
cagccccgatggaacttttttcctcagttgggATAAACATTCCTaatgaa
atcccaatggggatagaaattatattgttccaaggttaaaaaatccagtg
atatggttttagagtgcaatttttaaacatgggaTCTCGAATGGGGACGA
aaccaaagtcaatttcccagtggagctGAAATGACAGggttttttcccac
cggggacgaaatgtTTTCCAGTGGGGTTGGGGTCTCAGTGGGtcagtgac
acaggggtgtcagaAACTCATTAAAGGACGTTCAATTAAATTTgttgcaa
atatttttttaaaaactaaataatttttgtataaattttaattaaaaaag
aatttctctaataaattttaaattttagattCAAATCATATAATGCAGAT
ACTAAGGGTACATCAAAGAAGAAGATTGCGCATTTTTCTGCCCTCTTTAA
AGTGTCACCCCTAAAATCGGAACATTTATAATTAACATGGCGCTTTGCAC
TAAATGCAATACTTTATCAGTACCTCTTTAcaaaggtacacgtttttttt
ataagaacaaaCTATATGAGAACTTCAAGTTTCGATGGTCg
Run BLAST on NCBI

transcript from alignment at scaffold_354:900009..906294-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061206 ID=TCONS_00061206|Name=TCONS_00061206|organism=Clytia hemisphaerica|type=transcript|length=6286bp|location=Sequence derived from alignment at scaffold_354:900009..906294- (Clytia hemisphaerica)
AAAATATAACATTGTCAAGATCTTATCTCTTATGGTACGTTCAATAATTA
TGTCTTGTCTCAAAATATCAAAGAGTGTTTTTTTGTCAGTTTTGCATGTA
AGCCAGTGGCGTGGTGGCAGGGGGGGGCAGGGGGCCAGGCCCCCCCCCCA
GCGGAGCCCTTTTGAGAAGGGGCGCCCAAAAATAAGGGACGTTAAGAAGG
ATTTTTCAGACGCCCATATCGAAAGATTGACAAATGAAAAAACAAAAATG
GCGCCCCTCATCACCTCAAAAACTCAAAATTTTCTGGCTCGCTTCGCTCG
CAAACTCCCTATTTTGTGTTCATAATGAGCGTATAGAGAGGGGCGCCAAA
TAAAAATAGTCTTTGAAAAGGGCGCCATATTTGCCTTGGCCACCCCAGAG
AAATTTTCCCACCACGCCACTGTGTAAGCTTTTCATATAAAAGCAGCCAT
GTTGATAAAAGTGTATTAATGATAGATCTATCATGTTTACTTTTCAGAAA
AAATTATAACAAGACGGGTTATATATGACAAGGTATAAACGTGAGCTATG
GATAAAGTTATAGGACAATCATTCAAAGAAAATGGATATTATACACCAAT
CAGCATTTTAACTGCAGAAGAAGCTGCAAAAACATTACAAAATTTCAATC
TGTATAAAGACACAGTTGGTACGAATGGTAAAATCATTGGTGATTTTCGC
TTTCAAGGTCATTTATTGATGAGATGGGTGTGGGATTTGATTCGTCATCC
AAAAATTGTGTCAGTTGTGAAAGAAACACTTGGCACAGAAAATATTCTTT
GCTGGGGTACAGATTTCAATATTAAACCTGGAAAATCTCAAGGTATCAGT
TGTTACTATAGAGAGTTCTTTTTTAATAATTTTCCCCTGTCACAAACGCC
CGCGTGATAATACTCTTGTCCGTCCGTCTCCACAGGTTAAATTTTTAGTT
TAGTTTAGTTTCTTGTTTCTATCCACATTGCCGAAAAATTCTAACCTACT
AAATGAGACTAAAGTGGTGTTTCTAAACACCTCTGTATCATAAAAAGAAC
TGCTTTATTTCTAATACACGTTTTTTTTTTTTAAGAAACACACTTTTAAG
AAACATGAGGCTCAGAATGCCTAAAAACTAAGAAACATCTAAGAAACATG
CTAAGGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATAACATTT
TTTAATTCGGTTTTTTAAGAACCTTCCAATCCAGCCTTCCATGAGGCTGA
TTATGTCAAAAAGTTTAGAAACATGTAAGAAACATTTAAAGCGCAAAAGG
CCGATTTTTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAA
ATAAAAAAAACGTGTACCATTTACGGGGTGCATAGCTCAAACTTTGACTG
AACATTTTTTTTCTCTTTAGGATATTTTACTTGGCACCAAGACGCCACTT
ATTGCGGTTTGACGCCGATTAGCAAAATGTTGACAGCTTGGATTGCTATC
ACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTCTGCCAAAAACACA
TTCAAAACAACTTGACCATATTGAAAAACAACAAGAACACAATATGTTAT
CTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAGAGGCTCTCC
ACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTTTGCATCATAG
CTATATGGTTCACGCTTCAGGACCTAATAAAACTGAAACACCAAGAATCG
GTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAGCCTCGTTTT
CCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACAACATGATTT
TTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACGATGCTTTTC
AAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTATTTCCTCGGA
AAATCGATCAAATCCTTCAAGTAGATACAGTTGAACTTAAATCTCTCTCT
AATTCAATCTTCAAGGGGCCAAAAATTCTCTTCGAATTAGAGAAATATTC
GAATTAGAGAGAGTAATTCTAAACCACTTTTCTCCTGAGCAGGCCATTTT
TTAAGTTCGAAATACAGAAAGATTCGAATAATTAGAGAGATTTACTTGTA
CTACAATACACAAACATTATCAGGAAACAAACTTTACATGGTTTTTATAA
GAATAATTTTTTGTAAGCCTCATTATGTAGTAAAATTAGTTCGATTCAAG
TTAATGATATGAAAGTTTCATCAAATCATATTACATGTTTTTTATAAGCA
TTCCACTTAACATATCTAGGCTCAGATATGGCAAAAGTTTAAGCATATGG
TAAACATTACTTTGGACTATATTTTCTGATTTTGGCAAATTTGATTAGAA
TATAGGCATCATTCTAGCATTTTTCAGCTTTGCCTATCTCTCAATTGAAG
CATCTACCATCCAGTTTTTGGATTTTTGTATGCTTATAAAAAAACATGTA
GTATAAAGATTTACTTTTTAAACTTTTCGTATCCAGTAACAAATTTTACA
CTAACTTGTAGTCTGAAAAATTCTCATCACAATGATACCAAATTATTTCT
AAAAAATTTGATAGAAATTCTTCAAAGACAGATTTGATTTCTTATTTTCG
TGCACTTTAGCTTTTAATCTAATAATGCGGTCATGATGCCGTTATATCAT
TAGAATCGCCAGAAAATTCTGAGCAAGAAAATAAAGGTATCTTTTGGTAT
AAAAGAGGTCTCCCCAAAATATAAGCCCCTAAAGTTTATGCATAATTTGA
CCTGAAACAAAAGAATTTCGTCATACCACGCTAATTATACAACTTTTTTA
AAGCAACAACAAAAGAAATCCATTAGCTCGAAACAAACNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGTATATGACGAGCC
GTTTGTCTATTGTTCTGAAGAAGCTGTTTTTCCATCTCTTTACATTCCTC
TGTTCAAATATACAAGAGATGTTGTTTGTATGTGAAAAAATCTGCGTGTA
AAAGTTAAGAAAATGTTTAGAAAAATTAGATAATTGGATGATTAAAAACT
GTTTAGACAAGGGGTAATCAAAGAAATAAAATCCAAATCTTTGCTTGAGG
TATGTATTACATCCTAGACTTTGGCTGGGATTAGATCCAAACCTAAGAAT
ACCGTAAGAATATTTCAGGATGATTTTTCCCAAAAAGTTAACAATATATT
AATGATGAATTGGAAAAACACTATTCTTATAAAAAAAAAGCGTGTAAATG
AAATACCTTATCAGTACCTCTTGAAAAAGGTAATATACGTTTTTTCATAA
GAACATCCAGATTTTTTTAAGCCTTTGGGTGTTCTTACTTTTTTGAGTTT
TAAGCCTTAAAATGTTTTTAGCATGTTCATGACTGGTCTAAGTCTGAAGG
CTAGTAAAATATGATGGACGAATACATTGAACTCGAAAAATATATTTTGT
AATATATCCAATATATCATGCAATCTGAACCGTGCAATGACTATAACTTA
TGGAGAAGTAGTACAAAATCTTTTTATGAAATAATGGAATTAACGACGGC
AGTAACAACAAAATAATTGGTCTTTGGAAGATTGAAAAGCAAGTAGGCAT
TACCAACTCCGACCAATTCTTTGGTTGAATTTTGAGTTATTTTTATTCAA
GAGATTCGCGCTTTCTATAACCTTTTTGAAAAGATGTTCAGAGTCATATT
TCAAAGAAAATATAACATTGTCGAGATCTTATCTCTTATGATACGTTCAA
TAATTATGTCTTGTCTCAAAATTCAAAGAGTGTTTTTTTTGTCAGTTTCG
CACGCAAATTTTTCATGTAAAAACACAACCATGTGTCGATGTATTAATGA
TAGATCTATCACGTTTACTTTTAATGAAAAATTATAACAAGACAGGTTAT
ATACGACGATATCTAAACGTGAGCTATGGATAAAGTTATAGGACAATCAT
TCAAAGAAAATGGGTATTATACACCAATCAGCATTTTAACTGCAGAAGAA
GCTGCAAAAACATTACAAAATTTTAATCTGTTTAAAGACAGAGTTGGTAC
GAATGATAAAATCATTGGTGATTTTCGCTTTCAAGGTCATTTATTGATGA
AATGGGTGTGGGATTTGATTCGTCATCCAAAAATTGTGTCAGTTGTGAAA
GAAGCACTTGACACTGAAAATATTCTTTGCTGGGGGACAGATTTCAATAT
TAAACCTGGAAAATCTCAAGGTATCAGTTGTTGCTATAGAGAGTACTTTT
TTAATAATTTTCCCGTCACAAACGCCCGCGTGATAATATTCTTGTCCGTC
CGTCTCCACAGGTTAAATTTTAGAGAAAGATAAACTGTGGCACTTATCTC
CTACGGGAAGAAATTTTGGCGGGAATTTCATTTGGCGGGTACTTCAAAAA
TCACATGAATTTTTGAGAATCATCATTGAATTTTTGGGCTGTAAACAATA
GAATTTGAAATTTTCAACTCATTTAAACAACAGATTTTGCATTCTTGTAA
GTTTAGGATCTTGTTCTATCCCCATTGTCGAAAAATTTTGAGTGGTGTTT
CTAAACACCCCTGTATCATAAAAAGAGCTTGTTTCTATAATGCATTTTTG
GACTAATAGAGTTGCCCAATACCTCTTACCCTTGCCAGTTTGAATCATTT
TACGTGGGAAAATTTAAATTTAATTTACGGGGTGCATAGCTCAAACTTTG
ACTGAACATTTGTTTTCTCTTTAGGATATTTTACTTGGCACCAAGACGCC
ACTTATTGCGGTTTGACGCCGATTAACAAAATGTTGACAGCTTGGATTGC
TATTACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTTTTACCAAAAA
CACATTCAAAACGACTTGATCATATTGAAAAACAGCAAGAACACAATATG
TTATCTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCGAAAAGAGGCT
CTCCACACAAGTCTACGCAGAACTTGTACCAGGACAAATGTCTCTGCATC
ATAGCTATATGGTTCACGCTTCAGGACCTAATGAAACTGAAACACCAAGA
ATCGGTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTAAAGAGCCTCG
TTTTCCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATCAAACAACATG
ATTTTTTCGAATATGAACATGCCCCTGTGGAAGATTTTTCTGACGATGCT
TTTCAAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGAATTATTTCCT
CGGAAAATCGATCAAATCTTTTAAGTAGNGTAACTCTGATCAGCGGTATC
AAACAACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGATTTTTC
TGACGATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAGAAAAGGAGA
ATTATTTCTTCGGAAAATCGATCAAATCTTTTAAGTAGGTTCAGTTGAAT
CTCTCTCTAAAAATCAGTTAGATAATATTCAACACCCCCATCTCACAGCC
CCGATGGAACTTTTTTCCTCAGTTGGGATAAACATTCCTAATGAAATCCC
AATGGGGATAGAAATTATATTGTTCCAAGGTTAAAAAATCCAGTGATATG
GTTTTAGAGTGCAATTTTTAAACATGGGATCTCGAATGGGGACGAAACCA
AAGTCAATTTCCCAGTGGAGCTGAAATGACAGGGTTTTTTCCCACCGGGG
ACGAAATGTTTTCCAGTGGGGTTGGGGTCTCAGTGGGTCAGTGACACAGG
GGTGTCAGAAACTCATTAAAGGACGTTCAATTAAATTTGTTGCAAATATT
TTTTTAAAAACTAAATAATTTTTGTATAAATTTTAATTAAAAAAGAATTT
CTCTAATAAATTTTAAATTTTAGATTCAAATCATATAATGCAGATACTAA
GGGTACATCAAAGAAGAAGATTGCGCATTTTTCTGCCCTCTTTAAAGTGT
CACCCCTAAAATCGGAACATTTATAATTAACATGGCGCTTTGCACTAAAT
GCAATACTTTATCAGTACCTCTTTACAAAGGTACACGTTTTTTTTATAAG
AACAAACTATATGAGAACTTCAAGTTTCGATGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038388XLOC_038388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061206-exon-scaffold_354-1575043694:906261..906294TCONS_00061206-exon-scaffold_354-1575043694:906261..906294Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1575043694:905453..905797TCONS_00061206-exon-scaffold_354-1575043694:905453..905797Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1575043694:900009..901370TCONS_00061206-exon-scaffold_354-1575043694:900009..901370Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1510915933:906261..906294TCONS_00061206-exon-scaffold_354-1510915933:906261..906294Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1510915933:905453..905797TCONS_00061206-exon-scaffold_354-1510915933:905453..905797Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1510915933:900009..901370TCONS_00061206-exon-scaffold_354-1510915933:900009..901370Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1491911889:906261..906294TCONS_00061206-exon-scaffold_354-1491911889:906261..906294Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1491911889:905453..905797TCONS_00061206-exon-scaffold_354-1491911889:905453..905797Clytia hemisphaericaexon
TCONS_00061206-exon-scaffold_354-1491911889:900009..901370TCONS_00061206-exon-scaffold_354-1491911889:900009..901370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:900009..906294 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104791	0.320282	0	0.999582	0.0473297	1.24671e-08	0.726653	1.97969	0.381861	0.677575	2.25883	0	0	1.05746	2.88198	4.23008	0.509208	1.63002	1.36406	0.36259	1.35686	1.07188	1.45082	0	0	0.00995401	0.495959	1.0067	0.851599
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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