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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061205 ID=TCONS_00061205|Name=TCONS_00061205|organism=Clytia hemisphaerica|type=transcript|length=1746bp
CGATGTATTAATGATAGATCTATCACGTttacttttaatgaaaaattata
acaaGACAGGTTATATACGACGATATCTAAACGTGAGCTATGGATAAAGT
TATAGGAcaatcattcaaagaaaatGGGTATTATACACCAATCAGCATTT
TAACTGCAGAAGAAGCTGCAAAAACATTACAAAATTTTAATCTGTTTAAA
GACAGAGTTGGTACGAATGATAAAATCATTGGTGATTTTCGCTTTCAAGG
TCATTTATTGATGAAATGGGTGTGGGATTTGATTCGTCATCCAAAAATTG
TGTCAGTTGTGAAAGAAGCACTTgacactgaaaatattctttgcTGGGGG
ACAGATTTCAATATTAAACCTGGAAAATCTCAAGGATATTTTACTTGGCA
CCAAGACGCCACTTATTGCGGTTTGACGCCGATTAACAAAATGTTGACAG
CTTGGATTGCTATTACACCTTCAACAACCGAAAGTGGTTGTTTATGCTTT
TTACCAAAAACACATTCAAAACGACTTGATCATATTGAAAAACAGCAAGA
ACACAATATGTTATCTCTTGGTCAAGAAATAGCTGATCAAAATTTCATCG
AAAAGAGGCTCTCCACACAAGTCTACGCAGAACTTGTACCAGGACAAATG
TCTCTGCATCATAGCTATATGGTTCACGCTTCAGGACCTAATGAAACTGA
AACACCAAGAATCGGTTTAGCAATTCGATATTTAGCAGCAGAAGTTCGTA
AAGAGCCTCGTTTTCCCAGCATGGAGCGAGTAACTCTGATCAGCGGTATC
AAACAACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGATTTTTC
TGACGATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAAAAAAGGAGA
ATTATTTCCTCGGAAAATCGATCAAATCTTTTAAGTAGNGTAACTCTGAT
CAGCGGTATCAAACAACATGATTTTTTCGAATATGAACATGCCCCTGTGG
AAGATTTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATCGAGCGA
GAAAAGGAGAATTATTTCTTCGGAAAATCGATCAAATCTTTTAAGTAGGT
TCAGTTGAATCTCTCTCTAAAAATCAGTTAGATAATATTCAACACCCCCA
tctcacagccccgatggaacttttttcctcagttgggATAAACATTCCTa
atgaaatcccaatggggatagaaattatattgttccaaggttaaaaaatc
cagtgatatggttttagagtgcaatttttaaacatgggaTCTCGAATGGG
GACGAaaccaaagtcaatttcccagtggagctGAAATGACAGggtttttt
cccaccggggacgaaatgtTTTCCAGTGGGGTTGGGGTCTCAGTGGGtca
gtgacacaggggtgtcagaAACTCATTAAAGGACGTTCAATTAAATTTgt
tgcaaatatttttttaaaaactaaataatttttgtataaattttaattaa
aaaagaatttctctaataaattttaaattttagattCAAATCATATAATG
CAGATACTAAGGGTACATCAAAGAAGAAGATTGCGCATTTTTCTGCCCTC
TTTAAAGTGTCACCCCTAAAATCGGAACATTTATAATTAACATGGCGCTT
TGCACTAAATGCAATACTTTATCAGTACCTCTTTAcaaaggtacacgttt
tttttataagaacaaaCTATATGAGAACTTCAAGTTTCGATGGTCg Run BLAST on NCBI transcript from alignment at scaffold_354:900009..902258- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061205 ID=TCONS_00061205|Name=TCONS_00061205|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at scaffold_354:900009..902258- (Clytia hemisphaerica)
CGATGTATTAATGATAGATCTATCACGTTTACTTTTAATGAAAAATTATA
ACAAGACAGGTTATATACGACGATATCTAAACGTGAGCTATGGATAAAGT
TATAGGACAATCATTCAAAGAAAATGGGTATTATACACCAATCAGCATTT
TAACTGCAGAAGAAGCTGCAAAAACATTACAAAATTTTAATCTGTTTAAA
GACAGAGTTGGTACGAATGATAAAATCATTGGTGATTTTCGCTTTCAAGG
TCATTTATTGATGAAATGGGTGTGGGATTTGATTCGTCATCCAAAAATTG
TGTCAGTTGTGAAAGAAGCACTTGACACTGAAAATATTCTTTGCTGGGGG
ACAGATTTCAATATTAAACCTGGAAAATCTCAAGGTATCAGTTGTTGCTA
TAGAGAGTACTTTTTTAATAATTTTCCCGTCACAAACGCCCGCGTGATAA
TATTCTTGTCCGTCCGTCTCCACAGGTTAAATTTTAGAGAAAGATAAACT
GTGGCACTTATCTCCTACGGGAAGAAATTTTGGCGGGAATTTCATTTGGC
GGGTACTTCAAAAATCACATGAATTTTTGAGAATCATCATTGAATTTTTG
GGCTGTAAACAATAGAATTTGAAATTTTCAACTCATTTAAACAACAGATT
TTGCATTCTTGTAAGTTTAGGATCTTGTTCTATCCCCATTGTCGAAAAAT
TTTGAGTGGTGTTTCTAAACACCCCTGTATCATAAAAAGAGCTTGTTTCT
ATAATGCATTTTTGGACTAATAGAGTTGCCCAATACCTCTTACCCTTGCC
AGTTTGAATCATTTTACGTGGGAAAATTTAAATTTAATTTACGGGGTGCA
TAGCTCAAACTTTGACTGAACATTTGTTTTCTCTTTAGGATATTTTACTT
GGCACCAAGACGCCACTTATTGCGGTTTGACGCCGATTAACAAAATGTTG
ACAGCTTGGATTGCTATTACACCTTCAACAACCGAAAGTGGTTGTTTATG
CTTTTTACCAAAAACACATTCAAAACGACTTGATCATATTGAAAAACAGC
AAGAACACAATATGTTATCTCTTGGTCAAGAAATAGCTGATCAAAATTTC
ATCGAAAAGAGGCTCTCCACACAAGTCTACGCAGAACTTGTACCAGGACA
AATGTCTCTGCATCATAGCTATATGGTTCACGCTTCAGGACCTAATGAAA
CTGAAACACCAAGAATCGGTTTAGCAATTCGATATTTAGCAGCAGAAGTT
CGTAAAGAGCCTCGTTTTCCCAGCATGGAGCGAGTAACTCTGATCAGCGG
TATCAAACAACATGATTTTTTCGAATATGAACATGCCCCTGTGGAAGATT
TTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATCGAGCGAAAAAAG
GAGAATTATTTCCTCGGAAAATCGATCAAATCTTTTAAGTAGNGTAACTC
TGATCAGCGGTATCAAACAACATGATTTTTTCGAATATGAACATGCCCCT
GTGGAAGATTTTTCTGACGATGCTTTTCAAGAACACAAGCTATCCATCGA
GCGAGAAAAGGAGAATTATTTCTTCGGAAAATCGATCAAATCTTTTAAGT
AGGTTCAGTTGAATCTCTCTCTAAAAATCAGTTAGATAATATTCAACACC
CCCATCTCACAGCCCCGATGGAACTTTTTTCCTCAGTTGGGATAAACATT
CCTAATGAAATCCCAATGGGGATAGAAATTATATTGTTCCAAGGTTAAAA
AATCCAGTGATATGGTTTTAGAGTGCAATTTTTAAACATGGGATCTCGAA
TGGGGACGAAACCAAAGTCAATTTCCCAGTGGAGCTGAAATGACAGGGTT
TTTTCCCACCGGGGACGAAATGTTTTCCAGTGGGGTTGGGGTCTCAGTGG
GTCAGTGACACAGGGGTGTCAGAAACTCATTAAAGGACGTTCAATTAAAT
TTGTTGCAAATATTTTTTTAAAAACTAAATAATTTTTGTATAAATTTTAA
TTAAAAAAGAATTTCTCTAATAAATTTTAAATTTTAGATTCAAATCATAT
AATGCAGATACTAAGGGTACATCAAAGAAGAAGATTGCGCATTTTTCTGC
CCTCTTTAAAGTGTCACCCCTAAAATCGGAACATTTATAATTAACATGGC
GCTTTGCACTAAATGCAATACTTTATCAGTACCTCTTTACAAAGGTACAC
GTTTTTTTTATAAGAACAAACTATATGAGAACTTCAAGTTTCGATGGTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061205-exon-scaffold_354-1575043694:901875..902258 | TCONS_00061205-exon-scaffold_354-1575043694:901875..902258 | Clytia hemisphaerica | exon |
| TCONS_00061205-exon-scaffold_354-1575043694:900009..901370 | TCONS_00061205-exon-scaffold_354-1575043694:900009..901370 | Clytia hemisphaerica | exon |
| TCONS_00061205-exon-scaffold_354-1510915933:901875..902258 | TCONS_00061205-exon-scaffold_354-1510915933:901875..902258 | Clytia hemisphaerica | exon |
| TCONS_00061205-exon-scaffold_354-1510915933:900009..901370 | TCONS_00061205-exon-scaffold_354-1510915933:900009..901370 | Clytia hemisphaerica | exon |
| TCONS_00061205-exon-scaffold_354-1491911889:901875..902258 | TCONS_00061205-exon-scaffold_354-1491911889:901875..902258 | Clytia hemisphaerica | exon |
| TCONS_00061205-exon-scaffold_354-1491911889:900009..901370 | TCONS_00061205-exon-scaffold_354-1491911889:900009..901370 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:900009..902258 - |
Blast
The following BLAST results are available for this feature:
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