TCONS_00061204 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061204
Unique NameTCONS_00061204
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061204 ID=TCONS_00061204|Name=TCONS_00061204|organism=Clytia hemisphaerica|type=transcript|length=1366bp
TGCaacttttttattaattttaagaatttatacaaactttcttttcatga
aaaattattacaataaaaaaacacGCTGTGGAAAAATAAAATCGTAATAT
TCACACCCAAACTCTtccaaaatatttacatttctTACACATACTTTAAA
AATTATGTACCAATAAATTAAAAACtattaattttaaaactttttaaaga
taaattaTCACTAGTAAGCAGAAGCAGACATTGAATAATTCTTCATATAT
ACACAATGACTAAAAGATTAAATTGTCTAGGGTataaatctcaataacaa
tCTCTTCAAAACATCTGAATGATCGtgacaattttaaaaattaattttct
tacCTTATTAAATTAACATTTTGAACTAATGtcttttaaacatttaaaaa
aatatataaatttttgcgcTCAACAAGTACATTTATATCATTGCTTTAAA
GTTTCATTCATAAGATAAGAATCCTAACTCACTTGGTACAGTTATTTGAC
TGCCAAGAACATCAAGCTCCCATTTAAGTAGATCCTTTATAAAACTCTGG
TTAGGGCAGACAGAATGGTGACATTTCTTTATTTGTCGTAGAGCATCTTT
CAATGGAATCTTATGATGAAAGATGAGATAACTCAAAGCAACAGTAACAC
AACGACTTATACCAAGTTCTGAATAGACCAATAATGTTTTTCCGTCACCT
TTATGATGTTGTTGGATAAAGGAACAACAAGTACTGAATTGAGAAAACAA
ATCTGCATGAATGCTATCTTCAACAGGTTCACCTGCTTGTTTGCGAAGGC
CAATGTACAAAAAGCCTGGTAAGACTTCAATCGGGTAAGTAAACAATGCT
TCAATTTCTCCTTGAGTCCACAACATCTTCTGAGTACGCAAAAAGGGATA
TAAAGCACTGAATTCTTCGTAGCCTCCTTTCACAACTTTGACTGGGTATT
TGCTACCCATTTTCCATAATAACTCAGCTAAGCCAACAGCTGGACTTTGT
ATATCTTTCAGCGAAGAACAACGGCTATCAATAACAACCAAATTTTTAAC
AGCACTGTAATCAATGTTTGTAGGTACAATATACTTGTCATCTTTTCGTT
TTATGTGTTTTGACGTCACGACATGACTTTCATGGAAATCATCAGGTTTT
CTTGGATCAAACAACACCAAATAATATTCGTTGACAACACAAGGTACACT
TTGATGCAGCTGGTTTAATAAATTATAAAGCTCTGTTGGCTCAATGAGTT
CTATTCCtctcattttgtttttttattcaatctttttattttgtctttac
TCTAAAGAAAACAGAATAGATTGTCATTCTTATGATGATGGGCTGTGACT
GCTTCTTTCTTTATCG
Run BLAST on NCBI

transcript from alignment at scaffold_354:852866..854360-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061204 ID=TCONS_00061204|Name=TCONS_00061204|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at scaffold_354:852866..854360- (Clytia hemisphaerica)
TGCAACTTTTTTATTAATTTTAAGAATTTATACAAACTTTCTTTTCATGA
AAAATTATTACAATAAAAAAACACGCTGTGGAAAAATAAAATCGTAATAT
TCACACCCAAACTCTTCCAAAATATTTACATTTCTTACACATACTTTAAA
AATTATGTACCAATAAATTAAAAACTATTAATTTTAAAACTTTTTAAAGA
TAAATTATCACTAGTAAGCAGAAGCAGACATTGAATAATTCTTCATATAT
ACACAATGACTAAAAGATTAAATTGTCTAGGGTATAAATCTCAATAACAA
TCTCTTCAAAACATCTGAATGATCGTGACAATTTTAAAAATTAATTTTCT
TACCTTATTAAATTAACATTTTGAACTAATGTCTTTTAAACATTTAAAAA
AATATATAAATTTTTGCGCTCAACAAGTACATTTATATCATTGCTTTAAA
GTTTCATTCATAAGATAAGAATCCTAACTCACTTGGTACAGTTATTTGAC
TGCCAAGAACATCAAGCTCCCATTTAAGTAGATCCTTTATAAAACTCTGG
TTAGGGCAGACAGAATGGTGACATTTCTTTATTTGTCGTAGAGCATCTTT
CAATGGAATCTTATGATGAAAGATGAGATAACTCAAAGCAACAGTAACAC
AACGACTTATACCAAGTTCTGAATAGACCAATAATGTTTTTCCGTCACCT
TTATGATGTTGTTGGATAAAGGAACAACAAGTACTGAATTGAGAAAACAA
ATCTGCATGAATGCTATCTTCAACAGGTACATTTAATAACTGTGAAATTA
AATCACGATTTTTGCCATGAATTCGATCTTCTAGTTTGAACACTGGATCT
TCAGTGGAGGTCAAATTTACATGCGCTTTGATTTTCAAATCTTTCTCAAT
TTTAGGTTCACCTGCTTGTTTGCGAAGGCCAATGTACAAAAAGCCTGGTA
AGACTTCAATCGGGTAAGTAAACAATGCTTCAATTTCTCCTTGAGTCCAC
AACATCTTCTGAGTACGCAAAAAGGGATATAAAGCACTGAATTCTTCGTA
GCCTCCTTTCACAACTTTGACTGGGTATTTGCTACCCATTTTCCATAATA
ACTCAGCTAAGCCAACAGCTGGACTTTGTATATCTTTCAGCGAAGAACAA
CGGCTATCAATAACAACCAAATTTTTAACAGCACTGTAATCAATGTTTGT
AGGTACAATATACTTGTCATCTTTTCGTTTTATGTGTTTTGACGTCACGA
CATGACTTTCATGGAAATCATCAGGTTTTCTTGGATCAAACAACACCAAA
TAATATTCGTTGACAACACAAGGTACACTTTGATGCAGCTGGTTTAATAA
ATTATAAAGCTCTGTTGGCTCAATGAGTTCTATTCCTCTCATTTTGTTTT
TTTATTCAATCTTTTTATTTTGTCTTTACTCTAAAGAAAACAGAATAGAT
TGTCATTCTTATGATGATGGGCTGTGACTGCTTCTTTCTTTATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038387XLOC_038387Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061204-exon-scaffold_354-1575043694:853585..854360TCONS_00061204-exon-scaffold_354-1575043694:853585..854360Clytia hemisphaericaexon
TCONS_00061204-exon-scaffold_354-1575043694:852866..853455TCONS_00061204-exon-scaffold_354-1575043694:852866..853455Clytia hemisphaericaexon
TCONS_00061204-exon-scaffold_354-1510915933:853585..854360TCONS_00061204-exon-scaffold_354-1510915933:853585..854360Clytia hemisphaericaexon
TCONS_00061204-exon-scaffold_354-1510915933:852866..853455TCONS_00061204-exon-scaffold_354-1510915933:852866..853455Clytia hemisphaericaexon
TCONS_00061204-exon-scaffold_354-1491911889:853585..854360TCONS_00061204-exon-scaffold_354-1491911889:853585..854360Clytia hemisphaericaexon
TCONS_00061204-exon-scaffold_354-1491911889:852866..853455TCONS_00061204-exon-scaffold_354-1491911889:852866..853455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:852866..854360 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.69655	5.38232	116.378	131.792	66.1211	51.1388	18.1345	15.8332	13.6433	11.4583	9.25776	8.20955	2.12091	2.77441	3.11671	3.68105	4.6038	4.29406	2.18394	2.11478	4.3878	4.07797	7.98092	7.15992	20.1483	21.831	3.23753	2.64747	2.38239	3.01676
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020422TYR_PHOSPHATASE_DUAL_dom
IPR001763Rhodanese-like_dom
IPR000340Dual-sp_phosphatase_cat-dom
IPR029021Prot-tyrosine_phosphatase-like
Vocabulary: Molecular Function
TermDefinition
GO:0008138protein tyrosine/serine/threonine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0016311dephosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Blast
[Close]
BLAST of TCONS_00061204 vs. Swiss-Prot (Human)
Match: STYL1 (Serine/threonine/tyrosine-interacting-like protein 1 OS=Homo sapiens GN=STYXL1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.295e-47
Identity = 99/309 (32.04%), Postives = 161/309 (52.10%), Query Frame = -2 
Query:  490 MRGIELIEPTELYNLLNQLHQSVPCVVNEYYLVLFDPRKPDDFHESHVVTSKHIKRKDDKYIVPTNIDYSAVKNLVVIDSRCSSLKD------------------IQSPAVGLAELLWKMGSKYPVKVVKGGYEEFSALYPFLRTQKMLWTQGEIEALFTYPIEVLPGFLYIGLRKQAGEP---------------------------------VEDSIHADLFSQFSTCCSFIQQHHKGDGKTLLVYSELGISRCVTVALSYLIFHHKIPLKDALRQIKKCHHSVCPNQSFIKDLLKWELDVLGSQIT 1263
            M G+ L EPTELYN+LNQ  + +  + +  YL L D R   ++ ESHV+T+  +K+K+++Y++P ++D   VK  VV D+  S+L+                   +   A+    +L ++ + +PV ++KGGYE FS  Y FLRTQK++W   E++A   YPIE++PG +++G   QA +P                                 +EDS  A +       C FI+ HH   G  +L++S  GISR     ++YL+  ++  L+ +   +KKC +++CPN+  +  LL+WE  +LG  IT
Sbjct:    1 MPGLLLCEPTELYNILNQATK-LSRLTDPNYLCLLDVRSKWEYDESHVITALRVKKKNNEYLLPESVDLECVKYCVVYDNNSSTLEILLKDDDDDSDSDGDGKDLVPQAAIEYGRILTRL-THHPVYILKGGYERFSGTYHFLRTQKIIWMPQELDAFQPYPIEIVPGKVFVGNFSQACDPKIQKDLKIKAHVNVSMDTGPFFAGDADKLLHIRIEDSPEAQILPFLRHMCHFIEIHHHL-GSVILIFSTQGISRSCAAIIAYLMHSNEQTLQRSWAYVKKCKNNMCPNRGLVSQLLEWEKTILGDSIT 306
The following BLAST results are available for this feature:
BLAST of TCONS_00061204 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STYL13.295e-4732.04Serine/threonine/tyrosine-interacting-like protein... [more]
back to top