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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061175 ID=TCONS_00061175|Name=TCONS_00061175|organism=Clytia hemisphaerica|type=transcript|length=2902bpRun BLAST on NCBI transcript from alignment at scaffold_354:507751..518137- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061175 ID=TCONS_00061175|Name=TCONS_00061175|organism=Clytia hemisphaerica|type=transcript|length=10387bp|location=Sequence derived from alignment at scaffold_354:507751..518137- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061175 vs. Swiss-Prot (Human)
Match: BGAL (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2) HSP 1 Score: 481.871 bits (1239), Expect = 1.062e-156 Identity = 272/622 (43.73%), Postives = 370/622 (59.49%), Query Frame = 2
Query: 113 FTIDYEHNTFLKDGKPFRYISGGMHYFRIPYQLWEDRLHKAKMMGLNTIQTYIAWNYHETVPGRYFFEGQKDLVKFIELAQQQDLLVILRPGPYICAEWDYGGFPAWIYSMCKDKIRTSDATYMKLVDRWFQNLFPRLEHLLYENGGPVIAFQVENEYGSY-GCDHEYMNNMVDLLKKYVPSS-LLFTTDGASDGMVKCGSTNRTYTTVDFGPGGDPSHSFDVQRKFQPKGPLVNSEFYTGWLDHWGEKHHQTSADLVASSLDKILALNASVNLYMFIGGTNFNMMSGANMGGDGLQPITSSYDYDAPLSEAGDPTEKYWKLQKVISKYTAMPPGPQPKPSEKLPYMKVPLASSQSLFDVVSQL-PANVSKTPQPFAWLDLAQ--GWILYEVDISGASGNDLILD--LGTFSDRANVFVDKKFQGILNAKYGSKLVI--EHGQTLDIFVENEGRIGYGHAMVDASKGIKSNVTLNGSTLLNWKMWPVRLVPPEMSSTPTPFLKILNHKIQSRNND--VTNDATWVVPSLFSFSFML-----DEPKDTFLKLDQWTKGAIIINGM-AQKYWTEAGPQKTLYIPSTYLQPHMKNTLIVFETDRSPTNASD---FYIEFVDTPIF 1918
F IDY ++FLKDG+PFRYISG +HY R+P W+DRL K KM GLN IQTY+ WN+HE PG+Y F D+ F+ LA + LLVILRPGPYICAEW+ GG PAW+ +R+SD Y+ VD+W L P+++ LLY+NGGPVI QVENEYGSY CD +Y+ + + ++ +LFTTDGA +KCG+ YTTVDFG G + + +F QRK +PKGPL+NSEFYTGWLDHWG+ H + VASSL ILA ASVNLYMFIGGTNF +GAN QP +SYDYDAPLSEAGD TEKY+ L+ +I K+ +P GP P + K Y KV L +++ + L P+ K+ P ++ + Q G++LY + N L L DRA V VD QG+L L I + G TLD+ VEN GR+ YG A ++ KG+ SN+TL+ + L +W ++P+ + L H+ +++ N + + +P+ + +F + D P+DTF++ WTKG + ING +YW GPQ TL++P L NT+ V E + +P ++ D + FVD P+
Sbjct: 32 FEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGAN-SPYAAQP--TSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYG-AYINDFKGLVSNLTLSSNILTDWTIFPL-----DTEDAVRSHLGGWGHRDSGHHDEAWAHNSSNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRPVI 644 The following BLAST results are available for this feature:
BLAST of TCONS_00061175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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