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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061174 ID=TCONS_00061174|Name=TCONS_00061174|organism=Clytia hemisphaerica|type=transcript|length=2203bpRun BLAST on NCBI transcript from alignment at scaffold_354:490163..510942- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061174 ID=TCONS_00061174|Name=TCONS_00061174|organism=Clytia hemisphaerica|type=transcript|length=20780bp|location=Sequence derived from alignment at scaffold_354:490163..510942- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061174 vs. Swiss-Prot (Human)
Match: BGAL (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2) HSP 1 Score: 387.882 bits (995), Expect = 1.772e-123 Identity = 199/409 (48.66%), Postives = 265/409 (64.79%), Query Frame = 3
Query: 162 NERSFTIDYEHNTFLKDGKPFRYISGSMHYFRTPHQLWEDRFYKAKMAGLNVIQTYVAWNMHEMFEDVYHFENDLDIVSYIKLAQQYDLMILLRPGPYIDSEWEYGGFPYWMNNKVGKLIRTSDQGYLNLVDKWFSVLLPKVKPLLYENGGPIIGVQVENEYGSY-GCDEKYMLAMEQMLRKYLGQKVFLYTTDPIIDQALQCGSISSLYRTVDFGAGHDVNKSFALQRKYQPKGPYVNSEYYTGWFDNWGEGHHVERPEYIAHYLGQILSFENASVNLYLFEGGSNRNFMNGGSYIANEYLPITTSYDFDAPLSEAGDPTEKYWQIQKVISKYERLPSGPQPEPTKKLAYRKLRIYSVENEGRTCFSEAIQDVRKGLLSGVILSGAPIT--GDWEHFRYGIYRQNTPE 1379
+R F IDY ++FLKDG+PFRYISGS+HY R P W+DR K KMAGLN IQTYV WN HE + Y F D D+ +++LA + L+++LRPGPYI +EWE GG P W+ K L+R+SD YL VDKW VLLPK+KPLLY+NGGP+I VQVENEYGSY CD Y+ +++ R +LG V L+TTD L+CG++ LY TVDFG G ++ +F QRK +PKGP +NSE+YTGW D+WG+ H + E +A L IL+ ASVNLY+F GG+N + NG + + Y TSYD+DAPLSEAGD TEKY+ ++ +I K+E++P GP P T K AY K+ + ++ G A D+ SG I S P+T +H+ + +YR P+
Sbjct: 28 TQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILA-RGASVNLYMFIGGTNFAYWNGAN---SPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVG------AALDIL--CPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQ 424 The following BLAST results are available for this feature:
BLAST of TCONS_00061174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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