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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061173 ID=TCONS_00061173|Name=TCONS_00061173|organism=Clytia hemisphaerica|type=transcript|length=2485bpRun BLAST on NCBI protein sequence of TCONS_00061173-protein >TCONS_00061173-protein ID=TCONS_00061173-protein|Name=TCONS_00061173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp KFQGILNAKYGSKLVIEHGQTLDIFVENEGRIGYGHAMVDASKLHSLTGYRun BLAST on NCBI transcript from alignment at scaffold_354:490163..510942- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061173 ID=TCONS_00061173|Name=TCONS_00061173|organism=Clytia hemisphaerica|type=transcript|length=20780bp|location=Sequence derived from alignment at scaffold_354:490163..510942- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:490163..510942- >TCONS_00061173 ID=TCONS_00061173|Name=TCONS_00061173|organism=Clytia hemisphaerica|type=CDS|length=22968bp|location=Sequence derived from alignment at scaffold_354:490163..510942- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061173 vs. Swiss-Prot (Human)
Match: BGAL (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2) HSP 1 Score: 468.389 bits (1204), Expect = 2.849e-153 Identity = 276/652 (42.33%), Postives = 372/652 (57.06%), Query Frame = 3
Query: 162 NERSFTIDYEHNTFLKDGKPFRYISGSMHYFRTPHQLWEDRFYKAKMAGLNVIQTYVAWNMHEMFEDVYHFENDLDIVSYIKLAQQYDLMILLRPGPYIDSEWEYGGFPYWMNNKVGKLIRTSDQGYLNLVDKWFSVLLPKVKPLLYENGGPIIGVQVENEYGSY-GCDEKYMLAMEQMLRKYLGQKVFLYTTDPIIDQALQCGSISSLYRTVDFGAGHDVNKSFALQRKYQPKGPYVNSEYYTGWFDNWGEGHHVERPEYIAHYLGQILSFENASVNLYLFEGGSNRNFMNGGSYIANEYLPITTSYDFDAPLSEAGDPTEKYWQIQKVISKYERLPSGPQPEPTKKLAYRKLRIYSSLMFFVLEAILQ---PIILPQPASFERLDLAYGYMLYQIFIDQDQQMIEGPTQTLNLGDFRDRAYVYVDMKLQGILERNGDFQLNITIDPGHGLQIIVENEGRTCFSEAIQDVRKGLLSGVILSGAPITGDWEHFRYGIYRQNTPEARESEEENHLLGGFAAHRPFDEQAPVIVNSFTEHTPKVQKLFTSTQAQDGWVGPPALYGISFVLEE-----VADTYLKLDQWGKGFVTINEDHYYKYWTSSIPQKTIFIPKTNLKV-GNNTIVLTEFERAPSSMDE---AYIELVEKP 2078
+R F IDY ++FLKDG+PFRYISGS+HY R P W+DR K KMAGLN IQTYV WN HE + Y F D D+ +++LA + L+++LRPGPYI +EWE GG P W+ K L+R+SD YL VDKW VLLPK+KPLLY+NGGP+I VQVENEYGSY CD Y+ +++ R +LG V L+TTD L+CG++ LY TVDFG G ++ +F QRK +PKGP +NSE+YTGW D+WG+ H + E +A L IL+ ASVNLY+F GG+N + NG + + Y TSYD+DAPLSEAGD TEKY+ ++ +I K+E++P GP P T K AY K+ + IL PI P +F ++ YG++LY+ + QD + LN DRAYV VD QG+LERN LNIT G L ++VEN GR + I D KGL+S + LS +T DW I+ +T +A S LGG+ HR ++ + +T PA Y +F + DT+++ W KG V IN + +YW + PQ T+F+P+ L NTI + E E AP S D+ + V++P
Sbjct: 28 TQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILA-RGASVNLYMFIGGTNFAYWNGAN---SPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTVGAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLN--GVHDRAYVAVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDF-KGLVSNLTLSSNILT-DWT-----IFPLDTEDAVRSH-----LGGW-GHRDSGHHDEAWAHNSSNYT------------------LPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELEWAPCSSDDPELCAVTFVDRP 642 The following BLAST results are available for this feature:
BLAST of TCONS_00061173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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