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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061160 ID=TCONS_00061160|Name=TCONS_00061160|organism=Clytia hemisphaerica|type=transcript|length=7549bpRun BLAST on NCBI transcript from alignment at scaffold_354:448057..463560- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061160 ID=TCONS_00061160|Name=TCONS_00061160|organism=Clytia hemisphaerica|type=transcript|length=15504bp|location=Sequence derived from alignment at scaffold_354:448057..463560- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061160 vs. Swiss-Prot (Human)
Match: TDRD1 (Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 1.764e-36 Identity = 204/894 (22.82%), Postives = 375/894 (41.95%), Query Frame = 3
Query: 78 MLLSELAAKPFPDEQEFSICVTEVVSPHLFYGQLLTEESVESIQKLTIELANVYSSEPATSFTPKINEICVAKF-MDGQWYRASVIQYNSDM---TAHVFFFDFGNKCDVETSDIRCIKQHLLAYPRMAQKYSLANIESTKGSWGQESIAMMSTCQNNMVNATCVNIKVDLME-------CSLKMDGDAQSMEEKLIQKGLARVKSGRNASDMKID-----------------------------LPTDDSFTVIVMHVKDTSSFHGQLLTSENIEEITXXXXXXXXXXXAPKTDITLKKDAICAAFHQEFQEWYRVQILDPNSQNGKVLLKLLDYGDELMIDTSQLRQLPSLLFDVPVKAIPMTLSGAKVDSNC-TNYQQCVEKLNKLILQKKCEIEVVNRESNRLHVKLSSDGIDCHQHLSEFL--EANPIGCQI--------VEQASKPVMIEDV--PL------VSTADSGDFLVTNIEDPSQIHGQLVVNIEEISHLDIISANLTERFLNK-TDEYQPKIGEICAVFFATFSQYFRAVVREINNDKTVVVQYIDYGNGSTVPFSQIAPLPKEHSTTPRQAVQFSLFS-EAGKVSWTXXXXXXXXXXXXXXXASYKTTKKEGEIVVVELSTENMNVNPMFSKYLVKDEKPAQQTKAPVTQALNS---------IMIEDVPLVSTADSGDFLVTNIEDPSQINGQLVVN-----------IEEISHLDIISANLTERFLNKTDE---YQPKIGEICAAFFATFSQYFRAVVREINNDKTAVVQYIDYGNGSTVPFSQIAPLPKEHSTTPRQAVQFSL--FSEAGKVPWTKECIDELKEILLNK--IASYKKTNKEGEILVVELSTENKNV---NQMFSKYLVRDEKPAQQT 2486
++ S+L + E VTE P FY QL + E +E + +L+ L Y++ + P E+C+AK+ +D W RA +IQ N D+ AHV + D+GN+ + + I + +++ +P A K +AN+ +G+W + I ++ C VD++E +++ + ++ LI+ G SG+++ D L D F +V H++ F Q L S S P++D IC A E +WYR +L S+ VL+ +DYG+ ++ +L + L ++P++AI L+G K T C+ K KL+ K ++VV++ N V+L H +S+ L +G Q V++ S P+ +E PL + + D +V I P + + V+ + + L+ ++ +L E K + ++ +IG+ C FFA ++RA+V+EI + V V ++DYGN V ++ + P Q ++ L ++ W++E I + + + + + VEL+ + + S L+ DE ++ +P N + ++ + S+A+ + ++ Q N +++ E L +++A L E + N Y+P+IG+ C A + + ++RAVV +D V Y DYGN T+P ++ P+ H P Q ++ SL E ++ I LK +LN+ + S K K + VE +EN V +++ + L ++ P +Q+
Sbjct: 250 IMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRA-IIQ-NVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGNWSSDCIKATKPL---LMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEES-VLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTPEAICLMK--KLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTVDVVVCVIYSPGEFYCH-VLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGVELTDLSTCYPRIISDVLI-DEHLVLKSASPHKDLPNDRLVNKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLE-YCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLG-TSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSLEGLMELNGSS-SQLIIMLLKNFMLNQNVMLSVKGITKNVHTVSVEKCSENGTVDVADKLVTFGLAKNITPQRQS 1130 HSP 2 Score: 114.39 bits (285), Expect = 4.637e-25 Identity = 147/625 (23.52%), Postives = 264/625 (42.24%), Query Frame = 1
Query: 2596 VPLVSTADSGD---FLVTNIEDPSQIHGQLVVNIEEISHLDIISADLTERFLNKTDEYQPKVGEICAAFFATFSQYFRAIVREINNDKTAVVQYIDYGNGSTVPFSQITPLPKEHSTTPRQAVQFSLFSEAGKVP----WTKDCIDELKEILLNKIASYKTTKKEGGIVVAELSTENMNINQIFSKYLVRDEKPAQPLTSEASQHAKQP--ITDTESP--VNNSVTTTHSQSVDQYTKKPAFAVPDRCDVTIQHIENAQLFYAQENTQEKYGQLSMLTQAMTDHCSVDT-TPYQPTVGDLCCGLF--EGIWSRCLVIKTIAN-EATIFFIDFGNTSMLPFGSLRRMAPQFIQLPSFAMTLKL----SRSQIASNVTEKFIKMALNEI-YEMKVLERNQNVLTVQLFDRQTGDDIEDYLPEPIKDPVEPQKVKEEPKTIPTPVPRPGQTQTKQPQTNERIM-----IESIPKCNVPDEG--QMAVVNIEGPDCIHI--QLLVTNFEEIGQLDAMSLELTNKFKETDVSYQPIINEVCAAYFAGFDQYFRSVVTEVDSTKKTAKVQSLDFGNSATACFDDLAQLPMEHTLIAKQAIHFSLHGLTNDIWKKELDSELQTLLLNKLSTF 4383
+P V T + GD +V +I+ P Q + + +++ L + ++ ++D Y P +G+IC A F+ Q++RA V ++++ +V Y+DYGN + ++ P+ + P QA++ L AG P WT + I +K+++ NKI + K K + EL ++ + SK L+ A E S +P + +T P V V V+ V DV + I + FY ++ +L+ L +++ +HC ++ +G CC F +G W R LV + + N + F+D+GN + LR ++ F+ LP + +L SR++ S +M + I + +V+E +N + V+L D T P I D + + + + + +P + Q + + + E +P + Q V+ I P+ + + + N E++ L A LE N K + Y+P I + C A + D ++R+VV T +V D+GN T + + H + Q I SL GL EL+ L++ L F
Sbjct: 484 IPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPPRSDFY-PAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVL---AGVKPSLGIWTPEAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLD----AGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVE-------LGVDQTVDVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGVELTDLST------CYPRIISDVLIDEHLVLKSASPHKDLPNDRLVNKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYCNAPK-SRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTD--VEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSLEGLM------ELNGSSSQLIIMLLKNF 1078 HSP 3 Score: 114.005 bits (284), Expect = 7.769e-25 Identity = 146/607 (24.05%), Postives = 259/607 (42.67%), Query Frame = 1
Query: 2635 VTNIEDPSQIHGQLVVNIEEISHLDIISADLTERFLNKTD-EYQPKVGEICAAFFATFSQYFRAIVREIN-NDKTAVVQYIDYGNGSTVPFSQITPLPKEHSTTPRQAVQFSLFSEAGKVP----WTKDCIDELKEILLNKIASYKTTK-KEGGIVVAELSTENMNINQIFSKYLVRDEKPAQPLTSEASQHAKQPITDTESPVNNSVTTTHSQSV----DQYTKKPAFAVPDRCDVTIQHIENAQLFYAQENTQEKYGQLSMLTQAMTDHCSVDTTP----YQPTVGDLCCGLF--EGIWSRCLVIKTIANEATIF-FIDFGNTSMLPFGSLRRMAPQFIQLPSFAMTLKLSRSQIASNV-TEKFI----KMALNEIYEMKVLERNQNVLTVQLFDRQTGD--DIEDYLPEPIKDPVEPQKVKEEPKTIP-TPVPRPGQTQTKQPQTNERIMIESIPKCNVPDEGQMAVVNIEGPDCIHIQLLVTN-FEEIGQLDAMSLE-----LTNKFKETDVSYQPIINEVCAAYFAGFDQYFRSVVTEVDSTKKTAKVQSLDFGNSATACFDDLAQLPMEHTLIAKQAIHFSLHGL--TNDIWKKELDSELQ 4353
VT + P + QL + E + +++ +SA L E + N + +Y P GE+C A + + RAI++ ++ K A V YIDYGN +P ++I L + P A++ + A +P W+ DCI K +L+ + S K E +V + E N ++ L+ +P + Q +K+ D P + TT + V D K V D + HI+ + F+ Q+ + +L+ L +++ +C D P + P +GD+CC F + W R V+ + E+ + ++D+GN +L L + P+ ++LP A+ L+ + + + T + I K+ N+I +KV+++ +N V+L D+ + L + E V ++P + T VP G P E +E V + V I P + +L + +++ L+ E L N FK I + C A+FAG ++R++V E+ KV +D+GN D+L + + Q I L + N W +E + Q
Sbjct: 270 VTEFKHPGDFYVQLYSS-EVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFV---ANVIPAEGNWSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKP----SGQDSKKENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGR--KLAELQASLSKYC--DQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTPEAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPL-GVEGKVNPL--EWTWVE----LGVDQTVDVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQKLPNGFKAE-------IGQPCCAFFAGDGSWYRALVKEILPNGHV-KVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQ 849 HSP 4 Score: 96.6709 bits (239), Expect = 1.240e-19 Identity = 97/409 (23.72%), Postives = 179/409 (43.77%), Query Frame = 1
Query: 2626 DFLVTNIEDPSQIHGQLVVNIEEISHLDIISADLTERFLNKT-DEYQPKVGEICAAFFATFSQYFRAIVREINNDKTAVVQYIDYGNGSTVPFSQITPLPKEHSTTPRQAVQFSLFS-EAGKVPWTKDCIDELKEILLN-KIASYKTTKKEGGIVVAELSTENMNINQIFSKYLVRDEKPAQPLTSEASQHAKQPITDTESPVNNSVTTTHSQSVDQYTKKPAFAVPDR-CDVTIQ----HIENAQLFYA-QENTQEKYGQLSMLTQAMTDHCSVDTT--PYQPTVGDLCCGLF--EGIWSRCLVIKTIANEATIFFIDFGNTSMLPFGSLRRMAPQFIQLP--------SFAMTLKLSRSQIASNVTEKFIKMALNEIYEMKVLERNQNVLTVQLFDRQTGDDIEDYL 3789
D +V I P + + V+ + + L+ ++ L E K + ++ ++G+ C AFFA ++RA+V+EI + V ++DYGN V ++ + P Q ++ L ++ W+++ I + + K+ + E GI V EL+ + +I S L+ DE + AS H P + VN H Q + + + + D TIQ I + LFYA + E +L MLT + ++C+ + PY+P +GD CC + + W R +V+ T + + + D+GN LP ++ + + LP M L S SQ+ + + F+ + N + +K + +N + ++V+ D+ D L
Sbjct: 717 DVVVCVIYSPGEFYCH-VLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGV-ELTDLSTCYPRIISDVLI-DE---HLVLKSASPHKDLP---NDRLVNKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYCNAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRCSLEGLMELNGSSSQLIIMLLKNFM-LNQNVMLSVKGITKNVHTVSVEKCSENGTVDVADKL 1115 HSP 5 Score: 88.5817 bits (218), Expect = 4.144e-17 Identity = 104/434 (23.96%), Postives = 183/434 (42.17%), Query Frame = 1
Query: 5002 MKIDLRDLS-GGTYELK--ITHVESPYMIYANFKDRIVTKELNDLCVLMASTYANDSSVSNL-KPGSLCAVK--VKELWMRGLVTGMD-EESNYSIFLIDFGNSIAAPKNEARALSPEFRRVPAQVVPLKLITVKPVEEQEEWSNEVCQFLKEFIIGQNVRVKPE---YKDGIIFGARIKV--QDQPLDKLLSDSGYAVKVDPIIPS--DSHAQN--KKDPRKAIPFSDISKQIDVEQPTM----------EDFEAYVTCVVSPRLFYCRMLDDEKEKAVDEVSAGLKAHFEGK-ESEGFEYSEGDLCAIKLT-DGQWYRGFIVRLHSNETASIWLCDFGSKYTMQREEIYPLPDKFKELPAQSVTLQMQYLVPINNTGYPKEASDYFRLLVVNRILKVKILKKHQTIYRVALFDKKTG--TDVGEKYVNKGYA 6213
M DLR L T E+K +T + P Y V + +N L + TYAN + G +C K V + W R ++ +D ++ + ID+GN P N L+ P + + V P E WS++ + K ++ Q +K ++ + F +++ + LD +L + GY +K PS DS +N + DP + I V++ + ++F V + +P F+C+ L ++ A E+ A L + + F + GD+C + + D QWYR ++ S E+ + D+G+ + + P+ K ELP Q++ + + P P EA + LV N+I+ VK++ K + V L DK V + ++ G+A
Sbjct: 251 MFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGN--WSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLK-----PSGQDSKKENADQSDPEDVGKMT-TENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLA--ELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTP-EAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFA 673 HSP 6 Score: 86.6557 bits (213), Expect = 1.574e-16 Identity = 79/344 (22.97%), Postives = 144/344 (41.86%), Query Frame = 1
Query: 5185 GSLCAVKVKE--LWMRGLVTGMDEESNYSIFLIDFGNSIAAPKNEARALSPEFRRVPAQVVPLKLITVKPVEEQEEWSNEVCQFLKEFIIGQNVRVKPEYKDGIIFGARIKVQDQP------LDKLLSDSGYAVKVDPII---PSDSHAQN--KKDPRKAIPFSDISKQIDVEQPTMEDFEAYVTCVV-SPRLFYCRMLDDEKEKAVDEVSAGLKAHFEGKESEGFEYSEGD-LCAIKLTDGQWYRGFIVRLHSNETASIWLCDFGSKYTMQREEIYPLPDKFKELPAQSVTLQMQYLVPINNTGYPKEASDYFRLLVVNRILKVKILKKHQTIYRVALFDKKT 6171
G +C + E W R V E + + +D+GN + P+ +P Q + L VKP W+ E +K+ + QN + + D + + +++ D+ + K+L D+G+AV ++ PSD + K P ++ V+Q V CV+ SP FYC +L ++ K +++++ L H + K GF+ G CA DG WYR + + N + D+G+ + +E+ + F LP Q + Q+ + N + +EA F++ V L+ ++++ + V L D T
Sbjct: 545 GDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKP--SLGIWTPEAICLMKKLV--QNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEWTWVELGVDQTV-----DVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCCAFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLAD-IQSRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGIGVELTDLST 878 The following BLAST results are available for this feature:
BLAST of TCONS_00061160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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