TCONS_00061157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061157
Unique NameTCONS_00061157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1031

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061157 ID=TCONS_00061157|Name=TCONS_00061157|organism=Clytia hemisphaerica|type=transcript|length=1031bp
aggcattttgatgtaactgattggttcgatcgtcgattccgttcgattga
gatcgtctggagaCTCTAACCTAAGTTATGCGTTTGGGCCATATTTATAA
TACAgccaggcacatcctggcaaatgaacggggtatttttcacttgcaac
cattggcaaatgaacggggtcgaaaacgaaagtgacgtaatagcgctgaa
tacccagtttaattgaaccgggttggaaatattttgcttNTCTTATGGAG
GTAAAAGCTTCAAAGGCTTCAAATTTGCTTTATTTGATCATCTCTTTAGT
TTCATGTGCGAGACAAAATGGAAGGCGTCACAAGGCTCTGgatctttttt
cgaatgtttgggaGGATTTTAGAGAAGAAAAGTCAAGTATATCGCTGGTG
GGTTTCTGCCAAAAAAGATGGAATTCATCGTCATTACcagttgaaatttt
aaaagttCGAATGTGTATTCACCTGAGAACTCGCGGAATAAAGTTTATAA
CGATGAAGTTGCTGCTAAAATTGAACAAATAATGACAAGATTGACGTTAC
GATTGGTCAAATAACTTGTAAAAGAATGGAATGGAAATTTTCAAGATGAT
TAAGAATTTACAAGCAGTGCTGAACAACGTCCATGAAAAGACTTTATAGA
GACTGTTGTTATGGAACTTATAGTGAAATGTCCAATTTATTTGAGATTTG
GTTTGAATAACATTTTTTGTAACAATCGGACTGTAATCTCAAAACCAAGT
CTTACATCAAGCACTTGTAATTATATTACTTTAGTAACCTTGATAACCTC
TTAATTTTTACCCATAATTGTAAGACTATGCCTTCAGTTTGCGCATATTT
AGAAAAATACAACATTTTTATTATTACATGAGAAATTGCATGAAATTGCT
TCCATTCGTCCGATTCACCCGATCTCACCCCTTAAACGAAAAGGTTTCTT
ATACTGTAGTCGTCAATTAATAGGGTTAAAATCCAATCGTTTTCTTTCCG
ATTCTTTCGCTTTTCGCTACTTTTTTTTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_354:410030..420161-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061157 ID=TCONS_00061157|Name=TCONS_00061157|organism=Clytia hemisphaerica|type=transcript|length=10132bp|location=Sequence derived from alignment at scaffold_354:410030..420161- (Clytia hemisphaerica)
AGGCATTTTGATGTAACTGATTGGTTCGATCGTCGATTCCGTTCGATTGA
GATCGTCTGGAGACTCTAACCTAAGTTATGCGTTTGGGCCATATTTATAA
TACAGCCAGGCACATCCTGGCAAATGAACGGGGTATTTTTCACTTGCAAC
CATTGGCAAATGAACGGGGTCGAAAACGAAAGTGACGTAATAGCGCTGAA
TACCCAGTTTAATTGAACCGGGTTGGAAATATTTTGCTTNTCTTATGGAG
GTAAAAGCTTCAAAGGCTTCAAATTTGCTTTATTTGATCATCTCTTTAGT
TTCATGTGCGAGACAAAATGGAAGGCGTCACAAGGCTCTGGATCTTTTTT
CGAATGTTTGGGAGGATTTTAGAGAAGAAAAGTCAAGTATATCGCTGGTA
AGGTTGAATTTTTACTTCATTTTCTTTAGGTATATAGTCCTTTGTGTACA
ATCCTGGGTAAAGGTTGTATAGCATGACAGATAACCTTCAATTTGATCGC
CACAATGGCCAAAATTTCAAAAGTTCAAAAGGACATTTTAAAGGCTTTGC
TGACTCAACAATTTCCCTAAGAAAAAAATACTCCCTAAATCGTGAAAATA
AGAACTCAATATTCAAAACTCAAATCTCAAGGTTTTCAGGCTTTAAACTC
AAAAAGTTAAGAACATCTGAAATGCTTAAAAAATGTTGAACTTTCATCTA
TTATATACTACAAGAATAAAATGTGTATAGCTATATCATTTGGTCTAAAC
TATACTACTTATACTAAATTGTACTGTATAAACTGTATATATACAGTATA
TATTTCCGGTAAATCTTNTACTTATTCTAAATTATACTGTATAAACTGTA
TATACAGTATTTTGCCATTTCCGGTAAATCTTAATTATGAAAGTCCACCA
CAAAGTCTTTGCCTGGCTATCTGGGAAACATTTTTGAATAATTTCTTCCC
TCCTTATTATTTAAAATGGAGTCTGTCTGTCTGTCTGGCTGGCTGGCTGG
CTGGCTGTCTGTCTGTCTGTCTGTCTTTTACTAAAAGAGTGTCATTAAAT
TCTAGCTGATTGTTTGTGCCTCAAAAAGATGGGGTCTAGTCTATCAATTC
AGTTTCTATTCTAGTACTTAATATTCTGATAGCCCAGTGGGATTCTTGAA
TTTCTGAAATAATTTATATGCATAATTTTCTTATAACTTTACCAGGAGAT
TTTATGCAAACCTTGATAAAGGGATCATTATAATTATGAGCAAGTGGAAG
GTGTATTTTACTTGTAAATATGTAACTAATTTATTGATTTTTCAGGTGGG
TTTCTGCCAAAAAAGATGGAATTCATCGTCATTACCAGTTGAAATTTTAA
AAGGTAGGTAGCATCCCAAAAAAAGCAACAGGATTTTGACCGCTTTTAGC
AACAAACAGAAATCAAATCCTAACTTTTTTTGGGTGATTCTGTGCGTATC
ATCATGAATATTTTTTTGTGACCTTTATCAATCCTTGACAGAACGTTGTA
GAGAGTCGTAAAAACCTCAAATTTTTTGCCACCAAAAACAATAGATTCTG
ATAGGGAAGATTTTACATAGATTAGTAAAGTCCCCCCCCCCTCTATCATA
CAATGTGTCCAAAAAACAAGCGAACAAATTAAAGTGGAATCCTCATGATT
TATGCGAAATTTTATGACTTATATACTTAATATTACAATCTATTCAATCA
TCCTGGGAATTGAATATCTATTGATTGAACAGAAAATATTAATCTTATTT
CCATTACACTAAGCCTAAGTTAAAGATAATGAGTTTTGAGGATTTTACTT
TATGGACATGTTCATAAATGATGAGTAAATATTGGCCTTTTGGAGACATT
TGAAATGACTGTTACAATTTTACCGTAGATACTAAACCCCGAAACAGGTG
GGAAACTAGTGGAAACGAATGCAAACAGGTGGAAACGAGTGGTGAAACGA
TTGGAAACGAGTGGTGAAACGGGTGGAAACGAATGAAAAACAACTGGAAA
CACATGAAAACGAGTGGAAACGAGTGCTAGGGGGTAAAGATAATTTGGCA
TTCGCGTTCTATTCAGGTTCTAATGGTGATTGGTGCCATATAATTGATGG
ACCTTTACGTTTTGGCGAAAATATATTGTATTAAGAAGTATAAAAATGAT
GTTTGGATTTCCGAAAACAATATTTCCCACGGTAAAACTAATTTTATTCA
GTCCCGTTAAAACAAAATTGAAAATTCCATCTTTTTTACCACCATTTTTG
TACACGAACATGTCGAAATTTGAAAAAATATACTTGACACGTTTTCGCGA
ATTTTCAGCCTTTTCGCAAAATCGTTTGCATTGCTCTTTCACGAAATTAA
ATTACGCGAACAAATAATGAACATCAAAGAGTTTAAAGATACAATTTTAT
ATAAAGTGAAAAGCAATAACAGCACACTCATGAGATTTTGAATTTATTAA
AAAGAGTATTGTTGCATTAAACAGACTGTACCTTTATAATCATAAAGGTT
GGCGAGTCCAGTCAAAACACAGATTTGATCTGCAGCGTCNNNNNNNNNNN
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NGCTGGAAGTAAACAAACACTGTAGTTAGTGTTATAGTTTGGAATGCAAA
AAGCTAAAATCTTCCTTTTACAAACTCTCCTGGTGTTAATTTTCATTGTG
GAACGAAAATTATACCAGATCGATTGGAGGGCTTTTCCGAGGGCTTTACA
ATGTAATGATCCAGATACACAAAAGGACGCCCAGAAAAGGAAGGTTTATG
TACACCCTTTGATAAAAATAAAAGGAAGGTTTTAAAAATTGAAAGCAAGC
AACACAGTACAGACAGATCTTGTTAGGAAAAAACCTTCCCTTATATGTAT
TAAAAAGACTTTGCAGTGATCATTCACATACTAAGGAAATATCAAGAATA
TATGCTTTGCAGCAACAACCATGTTTCTTTGTCATAAAAAATCCAACCAT
AAAAAAACATATAACATCAAAACACAAAAGTATCTGAAATACTGGATTTG
GTTTCAAATGAAAATAAGCTGCTTACTTACTACCAAAAAGAAAATCGCTT
CCATTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNTTTTAATTGTAGAAGGCCTAAAAAGGGTA
ATTTTGTAACATCAAATTCAACTCTTTCATAATATTGGCATCTTTTTTAT
ATATGTTACATTTTTACATGATTGGCATTTAAAGAGGTTTCAGAGATGAA
TTTTATTTCTTCAGAAGGAAAGTAACATACTAAAGCACTAGTTTTCATAT
TAATAAGTCAACAGTATTGGGTCATTTAGTGGTAATAAAGTAACAAAATT
GCTANCCATTCTGTTATCAAAGCAGCGTTCTGTTTTTAACAATGTTTTAA
GAGGCATTTGAAAAAAAATTATTAGTTTGATATGAACCCCTAGCACTGGT
TTCCACTCGTTTTCATGTGTTTCCAGTTGTTTTTCATTCGTTTCCACCCG
TTTCGCCACTCGTTTTCACTCGTTTCACCACTCGTTTCCACCCGTTTGCA
TTCGTTTCCACTAGTTTCCCACCCGTTTCGTGGTTTAGTATCTACGTTTT
ACCGTAAACCCCTGGTTTAGTATCTACGNCAGTTTTGTTACAAATTTATC
ATGTTTTTATCGACTTTTAAATAGGCATTGGATGGTTTTAACTAGCCATA
GGGTCAATGAATGGAAATAGTGACCTTTCATGTCCTCAAAAGAGTCTCAA
TTTGATAAATATGTAACAGGAATTCAAGATTACAAACAAACATAAGTCTA
AACTTGTAGTATAGACACCATGTTTGTTACAGATTTACCATTTTAAAACA
GACAAAGAAAACATGACAATACAAAAGACATGATATTGGTCTTAGGGTCA
ATTTAGATTAAAGAAATAGCATTCTTGTCACCAGTTAAATTTCTTTAATG
GTCTTTCAACAACAAGTGCACGCCTTGTCCGGTACTAAACAAGTTTGTGG
TGTTACATTTTTACCCAAATGCAGCATTTTTGGAAATTAAAGACATATTT
TTAAAGGTCATAAGCCTCGTTAATATTTCCCCCAAAGGAGGGCCTTTTTT
GGTGAGATTGACATGATTAAAATGACTTTAGGTACTATTTTTGCTAGTTG
CTAATACTGTTACTATTTTATCTTTTTCTTAGCCGTAGAGACCCTGTTAC
ACTATTGCCCTTTATTGATTTTTTATTTTCTTATGGATAAAACTAACCAT
TTGAAGAAAATTGAACAATGCAAACAACATTGAACTTCTTTAATGATAAA
AAAGTTACAATTGTTACATTTTTACCAATAGCAGGCCTTTGAACACATAT
ACACACACAAATATTTGTTTCTGAAAGCACTTCTAAGTTATGCTACACAA
TAATTGTCACCCTTTCACAAATTTTGGAATCTCAAAATTGATTTGTTACA
AAATTATCCACTTTTTGCTGATTTTTGCCATTTTTCAAATGTCTCCATTT
TACTCACCATTTATGAACATGTCCTTATATACAGATTTCTGGACACACTT
TACTGTTTTTCTCTTTTTCCAAAGCGTATTTTTGCTTTACATTTCGATAC
TGTTTTTTTTATGGAAAAAGTAACGATATTTTTCGGCAATTAAAAAAATC
TCATGAAAACCTTGAGGACTTTTAAGTATTGAAATTTCTTTCAATTTCAT
TTTAAGTTCGAATGTGTATTCACCTGAGAACTCGCGGAATAAAGTTTATA
ACGATGAAGTTGCTGCTAAAATTGAACAAATAATGACAAGATTGACGTTA
CGATTGGTCAAATAACTTGTAAAAGAATGGAATGGAAATTTTCAAGATGA
TTAAGAATTTACAAGCAGTGCTGAACAACGTCCATGAAAAGACTTTATAG
AGACTGTTGTTATGGAACTTATAGTGAAATGTCCAATTTATTTGAGATTT
GGTTTGAATAACATTTTTTGTAACAATCGGACTGTAATCTCAAAACCAAG
TCTTACATCAAGCACTTGTAATTATATTACTTTAGTAACCTTGATAACCT
CTTAATTTTTACCCATAATTGTAAGACTATGCCTTCAGTTTGCGCATATT
TAGAAAAATACAACATTTTTATTATTACATGAGAAATTGCATGAAATTGC
TTCCATTCGTCCGATTCACCCGATCTCACCCCTTAAACGAAAAGGTTTCT
TATACTGTAGTCGTCAATTAATAGGGTTAAAATCCAATCGTTTTCTTTCC
GATTCTTTCGCTTTTCGCTACTTTTTTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038369XLOC_038369Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061157-exon-scaffold_354-1575043694:419765..420161TCONS_00061157-exon-scaffold_354-1575043694:419765..420161Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1575043694:418809..418866TCONS_00061157-exon-scaffold_354-1575043694:418809..418866Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1575043694:410030..410605TCONS_00061157-exon-scaffold_354-1575043694:410030..410605Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1510915933:419765..420161TCONS_00061157-exon-scaffold_354-1510915933:419765..420161Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1510915933:418809..418866TCONS_00061157-exon-scaffold_354-1510915933:418809..418866Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1510915933:410030..410605TCONS_00061157-exon-scaffold_354-1510915933:410030..410605Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1491911889:419765..420161TCONS_00061157-exon-scaffold_354-1491911889:419765..420161Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1491911889:418809..418866TCONS_00061157-exon-scaffold_354-1491911889:418809..418866Clytia hemisphaericaexon
TCONS_00061157-exon-scaffold_354-1491911889:410030..410605TCONS_00061157-exon-scaffold_354-1491911889:410030..410605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:410030..420161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.909	16.0153	8.18813	9.19435	9.45218	6.36961	11.0489	10.1383	7.70299	6.70618	5.12482	4.99741	2.97777	3.38264	4.27444	4.69075	7.13366	5.68327	3.43066	4.00326	9.67248	9.52856	23.6522	17.8529	3.5527	5.06038	8.26209	7.67721	11.8285	18.4449
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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