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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061154 ID=TCONS_00061154|Name=TCONS_00061154|organism=Clytia hemisphaerica|type=transcript|length=5632bpRun BLAST on NCBI protein sequence of TCONS_00061154-protein >TCONS_00061154-protein ID=TCONS_00061154-protein|Name=TCONS_00061154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1325bp MDFKAVISNHGNEKVFKELSGEIERRLPSAPVEWKRSYGRASKEVVLQASRun BLAST on NCBI transcript from alignment at scaffold_354:320901..341438- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061154 ID=TCONS_00061154|Name=TCONS_00061154|organism=Clytia hemisphaerica|type=transcript|length=20538bp|location=Sequence derived from alignment at scaffold_354:320901..341438- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:320901..341438- >TCONS_00061154 ID=TCONS_00061154|Name=TCONS_00061154|organism=Clytia hemisphaerica|type=CDS|length=71604bp|location=Sequence derived from alignment at scaffold_354:320901..341438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061154 vs. Swiss-Prot (Human)
Match: TPC10 (Trafficking protein particle complex subunit 10 OS=Homo sapiens GN=TRAPPC10 PE=1 SV=2) HSP 1 Score: 366.311 bits (939), Expect = 2.859e-104 Identity = 213/640 (33.28%), Postives = 348/640 (54.37%), Query Frame = 2
Query: 344 MDFKAVISNHGNEKVFKELSGEIERRLPSAPVEWKRSYGRASKEVVLQASFSKFDLAKLSPNSNIESFSKLATKPLLHLFWISCNDNDKYKSSIKSEVNNWKNHLATNKNVDWLIVHVMYQENAKSGKSKIQLPRSSVFDKLKSDFG---QDRCVQLWEPDKETLFTKSNESWQTLLSALRNSLLESFGRYLDKFEEKIRSMREKYADPKWPFIEYFLVHEELAFIYQSITLNDDALIQYDEVDALLSQFIINSSGKEFPKWLTELSTTPTIWDGVILSGKVADQYNTLIKSNKATLLDLRNYIFLRQCKLLIKMKRKWEIPSRLLEFLFAVIHEFRLLDMKVPDHIVACWIVLTCLQVLPVLEK-------DENLDHSFRATVAQTYDLMRQKILLLGQVTGVYYNREQSDEEKELVQQLYNGLGK---FSMNKNHSP-KVVEAALESRGNFEKLYIDITNACMTRYEDIGRKHSKMFVGIDLAKYYLQHGQYLLAEPLLETSWSIYKSQRWETLYTDVLIPLADCQLKHKLHERYLSSVTLLSCAHCLPFETRDFYSKEVMRLSNDKDLNLPTVNSEPVLKIISAKVGLVKHKG----------HIGDTVQVNIIFDNELTMPVECQRVTINAKHFDL 2191
M+ K +++ G++ +F + + ++LP P+EW+RSYGRA K + L+++F +F L N L T P LH++W C D + YK+++K ++ W+N L + +VDWLIV ++ + K K+ I LPR+S+ DK+++DF DRCV L +P K++ +++ ESW L+ LR LL SF + L KFE+ +R++REK +P W F EYF+V EELAF+++ + +DAL+QYDE+DAL SQ+++N + WLT W+G+IL + + I+ +ATLLDLR+Y+F RQC LL+ ++R WE+ R LE L + E +LL++ VP + CW+ L+CL+VL +E D N+ H+ + +K+ LG + G+ + + E+ L GLG + N SP K ++ AL S FEK Y+D+++A + Y IGR S FVG DLA++Y++ AE L+ + Y ++ W T LA+CQ E YL + +LL+ H L E R + +E++ ++ + P KI+ + + H+G + V I +++ +PV +++ +N HF +
Sbjct: 15 MENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEELLPKEGN----KALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIV-IVENDAKKKNKTNI-LPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDS--SRTQESWNAFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRREATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFLSCLEVLQRIEGCCDRAQIDSNIAHT-----VGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTSSLLASDHHLTEEERKHFCQEILDFASQP-------SDSPGHKIVLPMHSFAQLRDLHFDPSNAVVHVGGVLCVEITMYSQMPVPVHVEQIVVNV-HFSI 633 The following BLAST results are available for this feature:
BLAST of TCONS_00061154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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