TCONS_00061146 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061146
Unique NameTCONS_00061146
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061146 ID=TCONS_00061146|Name=TCONS_00061146|organism=Clytia hemisphaerica|type=transcript|length=3058bp
ccataaaagtgctttaaagtagaattttaagggcctgtcattttcgttgg
ggtctattcacgaagatgaaaatgattttttcatacctaccataagtata
ggtatctaaaaagtatagattttatgaccttaaattcaattgtgtaattt
ctaggtccaaaaaacctgattttctgaaggaatttttgataaaattttga
ataacttcgaattttaagatactttagcatctttagaatccttaaaattt
ggtattttatgaaagaacatttataagaggttgtaaaaaagtgaaacata
ccacataaaattaaatctggtagttatgaaagccaaaaatgtggttttaa
ggggtatccactggtaatgggccattccattttataaccatagcactttt
ccagggggtaaattgaGAAGAATTTTCAGGAGGGCTAAGGAAGTGTTTTT
TCAcgtttccagggggtaaaaagcaATTCTTAAACTTCAAGGGGTAAACT
GATATTAGtttgtccaccctcactttaataaatgaaagtaattttttcca
ggcccttttttgcaaattttgctattttccagGGGAAAATCCAcacattt
ccaaaaaatttgttttgacttgaaaaggttcgtctcCCTCCCCCCGtatg
gaaattttttggaaCAGCCCAAACGTCCAGTATCACCTTGGAATGGTTTT
ATTTCTCTTCTTTATTGTGCATATGATACCCCCTTTTTTGGATTATGTCA
GGTTAATTTGCTCTGGTTAATTTCCGAAAAACGATTCCTACAGTATTATG
AATTTCCCTCAGTTTGTTCAAAAAAATAGCCCAACTTTAGTCATTTTCCT
TTATTCTTGACAAGTATCGAGCATCGAGACGGTAATTAGGTTACttcatt
ttattaaaattttgcaatCCCACTGTTATTGGACCCTTAAAACCTATGAC
TCAGCACACCATGGTCGGATGTATGTATACCCCTTATAAAGACATATACA
TTCTTTAAGAGTGTTGTTGTGTaattttactgttttttttNGTTACttca
ttttattaaaattttgcaatCCCACTGTTATTGGACCCTTAAAACCTATG
ACTCAGCACACCATGGTCGGATGTATGTATACCCCTTATAAAGACATACA
TTCTTTAAGAgttttactgttttttttcactatctttcagaaaaaaacat
aaaaaatactttcaatGTAATAAAATAAACTAAGAAATCATTGGAGCTAC
GCAGAAATCAACCAGTGAAAGATCTGACCAAAATATCTAACTTTTCGAAG
GTTATCTTTCTTCTTCCCTCTGGTCCTGGTCTTTTTCGCTAGAAATATTA
GTGCGAAAATGGGAATCTTGTATGCAAAATGACGATTACTATGAAACTAA
TATCTTTTGAAATTGGTATTTTCATTGAGTAACTACTGGAGATTAAGACA
TACAATTAAGACATATANCTGTGATCAAAGAAGGTTGCTTAACTTCAATA
AAGATGGTTGATGGTTAGATTTTGACAAAATCGTTTTGATTGATAGGTCG
ATATTTTGTAATCTAATTAATTCCTCAATTGTCATTGTTTTATGTAAATG
TCGtgttaaatattttgatattgtattaaatttaaattgttgcctttttt
catgattttgatctTTAAATTTAACATGAGATTTTATAAGAGTAAAATAT
aagataatataatataatggctatttatctatttattttacttaGGGTCC
ACCATTGTTCATCGAGTGGCTCAAATTTGAATTAGGACAAGATTTTTAGG
CCAACCGTCACGTCtctgaatttaaaagaatttagAAGGAGCTTCTTCTA
ATCTGTGGGGTATATAGTATTTTTCCAATGATCTACCACCGGAAATATAG
ATTTTTCGGATTCTTGGACACTCGTTTACCCCTTACCAAGACAAGCTTCA
AATTAAGCCCCCCCCCTGAGCACTGAGATTTATTCCTGGGCAACGCAAAT
TTGCCCTATGGAGATGGcagttttcaatattttttcattatacCCTTGGA
AATGTATCCCCCTATGTTTATTCTTGAAAACCTTAATAgcttattttttt
ttggatcggGGGTAGATTTACGTCTTTCGTTTCTTTCACTGTAGCATAAC
AGAAGACAATTTTTGAGAAGTTATTGTGACGTGTATCCGGTTCTCCGTTG
GTAGGACTTGACACCAACATTTATGGAAAATTCACGGTATCTAAAGATAT
TGATAATAGTGACAGCAACCATTTTGAATCTATTCCAGCCTAGACCATCA
CTACATTGAAAGACTTATTCCTTTACTGTATTTTTCTTAtagaaacaaca
aacaaaccgaaaaaatacttcaataaaaataaattgaacaaatttAAATC
TTAACAAAGGAAACTAGATGACTGGATGAGGTTGGGCTGTGATGTGTTAG
TAAGCGATGCAACATTCTTGGAATATATTGAAACAAGATCACAATCAtgT
CACCGGAATCAGTTGTTGTTACTTCCCCAGACTTACAATCACAATACCCA
TCGCGAGAATCAAATGGTGACAACTCGATGGATTTCTGCACATTTATTGG
ATGCAGAATTAAAACTATCCTGGTGTTTCCATGATCCCAACCTTCTCTCA
GAGAAGATACCTTCACAGTACAGTTTCTCCATTCCGGATCTTGCGGCTTT
ATGtgtgactcaaatttcatttttgaacttCCGAAACAAGTAGTTATCAT
AATTATACTTGGCATCAGTCTTCATACGTTTTACCATGCCGTCATACCAG
AAATTATAGTATTCCGGAACTCCACCTTCGATGGCTCTGCCCTCCACAAA
TTTTTGGAATCCTTTTATGAAATACTCTTGATTCGAAATatatgaatttg
aatttgattgaTTGCTCGTCGACTTGATTTTCTCGATCTCTTTCAACAAA
TTATCTTCTCTTTCCTTAGcttcttttttcactttttccaaTTGTAATTC
CAGTTgtgcatttttcaatttttcttgtaatAATTCGTCGTTCATTGTTT
TTTGCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_354:91111..94767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061146 ID=TCONS_00061146|Name=TCONS_00061146|organism=Clytia hemisphaerica|type=transcript|length=3657bp|location=Sequence derived from alignment at scaffold_354:91111..94767- (Clytia hemisphaerica)
CCATAAAAGTGCTTTAAAGTAGAATTTTAAGGGCCTGTCATTTTCGTTGG
GGTCTATTCACGAAGATGAAAATGATTTTTTCATACCTACCATAAGTATA
GGTATCTAAAAAGTATAGATTTTATGACCTTAAATTCAATTGTGTAATTT
CTAGGTCCAAAAAACCTGATTTTCTGAAGGAATTTTTGATAAAATTTTGA
ATAACTTCGAATTTTAAGATACTTTAGCATCTTTAGAATCCTTAAAATTT
GGTATTTTATGAAAGAACATTTATAAGAGGTTGTAAAAAAGTGAAACATA
CCACATAAAATTAAATCTGGTAGTTATGAAAGCCAAAAATGTGGTTTTAA
GGGGTATCCACTGGTAATGGGCCATTCCATTTTATAACCATAGCACTTTT
CCAGGGGGTAAATTGAGAAGAATTTTCAGGAGGGCTAAGGAAGTGTTTTT
TCACGTTTCCAGGGGGTAAAAAGCAATTCTTAAACTTCAAGGGGTAAACT
GATATTAGTTTGTCCACCCTCACTTTAATAAATGAAAGTAATTTTTTCCA
GGCCCTTTTTTGCAAATTTTGCTATTTTCCAGGGGAAAATCCACACATTT
CCAAAAAATTTGTTTTGACTTGAAAAGGTTCGTCTCCCTCCCCCCGTATG
GAAATTTTTTGGAACAGCCCAAACGTCCAGTATCACCTTGGAATGGTTTT
ATTTCTCTTCTTTATTGTGCATATGATACCCCCTTTTTTGGATTATGTCA
GGTTAATTTGCTCTGGTTAATTTCCGAAAAACGATTCCTACAGTATTATG
AATTTCCCTCAGTTTGTTCAAAAAAATAGCCCAACTTTAGTCATTTTCCT
TTATTCTTGACAAGTATCGAGCATCGAGACGGTAATTAGGTTACTTCATT
TTATTAAAATTTTGCAATCCCACTGTTATTGGACCCTTAAAACCTATGAC
TCAGCACACCATGGTCGGATGTATGTATACCCCTTATAAAGACATATACA
TTCTTTAAGAGTGTTGTTGTGTAATTTTACTGTTTTTTTTNGTTACTTCA
TTTTATTAAAATTTTGCAATCCCACTGTTATTGGACCCTTAAAACCTATG
ACTCAGCACACCATGGTCGGATGTATGTATACCCCTTATAAAGACATACA
TTCTTTAAGAGTTTTACTGTTTTTTTTCACTATCTTTCAGAAAAAAACAT
AAAAAATACTTTCAATGTAATAAAATAAACTAAGAAATCATTGGAGCTAC
GCAGAAATCAACCAGTGAAAGATCTGACCAAAATATCTAACTTTTCGAAG
GTTATCTTTCTTCTTCCCTCTGGTCCTGGTCTTTTTCGCTAGAAATATTA
GTGCGAAAATGGGAATCTTGTATGCAAAATGACGATTACTATGAAACTAA
TATCTTTTGAAATTGGTATTTTCATTGAGTAACTACTGGAGATTAAGACA
TACAATTAAGACATATANCTGTGATCAAAGAAGGTTGCTTAACTTCAATA
AAGATGGTTGATGGTTAGATTTTGACAAAATCGTTTTGATTGATAGGTCG
ATATTTTGTAATCTAATTAATTCCTCAATTGTCATTGTTTTATGTAAATG
TCGTGTTAAATATTTTGATATTGTATTAAATTTAAATTGTTGCCTTTTTT
CATGATTTTGATCTTTAAATTTAACATGAGATTTTATAAGAGTAAAATAT
AAGATAATATAATATAATGGCTATTTATCTATTTATTTTACTTAGGGTCC
ACCATTGTTCATCGAGTGGCTCAAATTTGAATTAGGACAAGATTTTTAGG
CCAACCGTCACGTCTCTGAATTTAAAAGAATTTAGAAGGAGCTTCTTCTA
ATCTGTGGGGTATATAGTATTTTTCCAATGATCTACCACCGGAAATATAG
ATTTTTCGGATTCTTGGACACTCGTTTACCCCTTACCAAGACAAGCTTCA
AATTAAGCCCCCCCCCTGAGCACTGAGATTTATTCCTGGGCAACGCAAAT
TTGCCCTATGGAGATGGCAGTTTTCAATATTTTTTCATTATACCCTTGGA
AATGTATCCCCCTATGTTTATTCTTGAAAACCTTAATAGCTTATTTTTTT
TTGGATCGGGGGTAGATTTACGTCTTTCGTTTCTTTCACTGTAGCATAAC
AGAAGACAATTTTTGAGAAGTTATTGTGACGTGTATCCGGTTCTCCGTTG
GTAGGACTTGACACCAACATTTATGGAAAATTCACGGTATCTAAAGATAT
TGATAATAGTGACAGCAACCATTTTGAATCTATTCCAGCCTAGACCATCA
CTACATTGAAAGACTTATTCCTTTACTGTATTTTTCTTATAGAAACAACA
AACAAACCGAAAAAATACTTCAATAAAAATAAATTGAACAAATTTAAATC
TTAACAAAGGAAACTAGATGACTGGATGAGGTTGGGCTGTGATGTGTTAG
TAAGCGATGCAACATTCTTGGAATATATTGAAACAAGATCACAATCATGG
TAATATATTTTTTTGGGTTTATACCACTCACATAAAGTAGTACACCCCTT
TGAGGTTACCACCTTTTCTTTTGGTTGGTGGGTTAAGGTTGAAAAGATTT
TGAAGTAGATCAACGAGCTTCAAGCCATATTACCGTTACCGAATTAGAGG
CAACTTAACATTCCATTCTATTAGGGGAACTTTGACCATCTTAGTTTAAT
CGCCTGGGTTTTACTCCTCTATCCTAAATTAACCCTTCATTATAATATCA
TACCACCCATTTAAATTTGAAAATATAGAAATTTTGATTCTGGGTTCTGG
GTTTAAGTTTGGGCTTGAATCGCAGTTAAAATTGCATTGCCCGTGCGCTC
CGCCCATTACGCCTGGCTCCCTTTGCGAGTGATGTCATATTTCAAAAAGC
TAGATAGATATGTAAGGATTTACACAATACTACAGTAGGCTGAAAAAAAA
TTACATATTTTTCAAATTTCTATATAATTTACTTAATCCCAGTCCTCGTT
AATGAGAAATATCTTGAAATGATTTCTGTAATTCGAATTCGAAATAATGA
GAGTCAACTGTATTTTTTCATACTTTTTTGCATGCGAAAATTATAAAGTC
ACCGGAATCAGTTGTTGTTACTTCCCCAGACTTACAATCACAATACCCAT
CGCGAGAATCAAATGGTGACAACTCGATGGATTTCTGCACATTTATTGGA
TGCAGAATTAAAACTATCCTGGTGTTTCCATGATCCCAACCTTCTCTCAG
AGAAGATACCTTCACAGTACAGTTTCTCCATTCCGGATCTTGCGGCTTTA
TGTGTGACTCAAATTTCATTTTTGAACTTCCGAAACAAGTAGTTATCATA
ATTATACTTGGCATCAGTCTTCATACGTTTTACCATGCCGTCATACCAGA
AATTATAGTATTCCGGAACTCCACCTTCGATGGCTCTGCCCTCCACAAAT
TTTTGGAATCCTTTTATGAAATACTCTTGATTCGAAATATATGAATTTGA
ATTTGATTGATTGCTCGTCGACTTGATTTTCTCGATCTCTTTCAACAAAT
TATCTTCTCTTTCCTTAGCTTCTTTTTTCACTTTTTCCAATTGTAATTCC
AGTTGTGCATTTTTCAATTTTTCTTGTAATAATTCGTCGTTCATTGTTTT
TTGCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038361XLOC_038361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061146-exon-scaffold_354-1575043694:92269..94767TCONS_00061146-exon-scaffold_354-1575043694:92269..94767Clytia hemisphaericaexon
TCONS_00061146-exon-scaffold_354-1575043694:91111..91669TCONS_00061146-exon-scaffold_354-1575043694:91111..91669Clytia hemisphaericaexon
TCONS_00061146-exon-scaffold_354-1510915933:92269..94767TCONS_00061146-exon-scaffold_354-1510915933:92269..94767Clytia hemisphaericaexon
TCONS_00061146-exon-scaffold_354-1510915933:91111..91669TCONS_00061146-exon-scaffold_354-1510915933:91111..91669Clytia hemisphaericaexon
TCONS_00061146-exon-scaffold_354-1491911889:92269..94767TCONS_00061146-exon-scaffold_354-1491911889:92269..94767Clytia hemisphaericaexon
TCONS_00061146-exon-scaffold_354-1491911889:91111..91669TCONS_00061146-exon-scaffold_354-1491911889:91111..91669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:91111..94767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.759799	0.76777	0.294595	0.253274	2.03983	1.4241	1.43279	2.2361	1.48141	1.11359	1.09562	1.12224	2.57627	1.65631	3.18602	3.17214	1.69963	2.76473	2.20703	2.07438	2.33047	2.94703	1.17861	0.911564	0	0	1.97564	0.716306	1.69921	0.858947
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061146 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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