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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061139 ID=TCONS_00061139|Name=TCONS_00061139|organism=Clytia hemisphaerica|type=transcript|length=760bp
tacttgcgaaatttgtaaacaaactgtatgcagcggatacaaaatcaaaa
caaatgtcacatgtcaaaataaaatatcaaactaaatatggctaattttg
attgttcaattgttttacaagtttgttttggacacgtgaatttaattgtt
ctctttaatgacacgtggttcgcgcaatgtttacattttactactttaat
gtacCTTTAATTCTTTGCTTTTCATTCCTTTAGATCAGATCTTCAACCTC
TTCTTCTATTTAAACGACACACATCACAAACTCGAACAACGATCATAGAA
ATTGTAGAAGCAATCCCATCGACCTATAAGGATTTCCTGTACGTTTCGTC
ACTACACTAGAAGTATCTCGTCTCTAAATGTCAAAATTTACATCAAATGA
TCGACACTGCAATTCGTTGACTTTCCTTACTGACTGATACTGaatacCGT
ACCGTTCGCCGCAGCTCTAACTTTTCTGAACATACTGTTAACCGGTTGCC
GTTTTTAATATTGGATTTTGTTTCTATTTACCGTTACGAAAAATGAATAC
TGAAACCAAAAAGACAATGTTAGAAGTTTAAATCACGCAGTCAATACCAC
GATGTCGGTctgaatattttttattaattctATTTTGTTTGGAATTTCTA
AGTGTTTAGATATTTTGAATCTGGAAAATAATGATATTACGTATCACGGA
CCCCGACCAGCCGGAGTGTAATTTGAATTTTGAGAAACCTTTTTTTGCCC
ACCATGTTTG Run BLAST on NCBI transcript from alignment at scaffold_354:79258..83934- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061139 ID=TCONS_00061139|Name=TCONS_00061139|organism=Clytia hemisphaerica|type=transcript|length=4677bp|location=Sequence derived from alignment at scaffold_354:79258..83934- (Clytia hemisphaerica)
TACTTGCGAAATTTGTAAACAAACTGTATGCAGCGGATACAAAATCAAAA
CAAATGTCACATGTCAAAATAAAATATCAAACTAAATATGGCTAATTTTG
ATTGTTCAATTGTTTTACAAGTTTGTTTTGGACACGTGAATTTAATTGTT
CTCTTTAATGACACGTGGTTCGCGCAATGTTTACATTTTACTACTTTAAT
GTACCTTTAATTCTTTGCTTTTCATTCCTTTAGATCAGATCTTCAACCTC
TTCTTCTATTTAAACGACACACATCACAAACTCGAACAACGATCATAGAA
ATTGTAGAAGCAATCCCATCGACCTATAAGGATTTCCTGTACGTTTCGTC
ACTACACTAGAAGTATCTCGTCTCTAAATGTCAAAATTTACATCAAATGA
TCGACACTGCAATTCGTTGACTTTCCTTACTGACTGATACTGGTAAGTTT
CCCGCTTTTAAGATCTTTTGTAGTTATTCAATGGTCAGATATATTGTTAG
ATAAAGTACTTTAGGGTTTTGGATTGTTAAAATTTATTGGTCATTGGATT
GTTGTCATATGATGTGGACTTTACACTTTATAAGAAATCTGTATAAGAAC
TGAACGAAATAATTCGATAATGTATAAATTTTAATAATCTAAACGATTTT
AAAGATGTTTCTTATGCTGCATTTCACTTTTATCATTTGGCTCAAATTAA
TTTTCAATCTTCTTTTTTAGAATACCGTACCGTTCGCCGCAGCTCTAACT
TTTCTGAACATACTGTTAACCGGTAAGTTCAATCAAAAATAAACTTTTTC
GATGATCCCAAATTTTGTTCTTGAATCGAAATCTTCCAATGTTTCGACTC
CGTTACATACTTTTCGCTTGACACAGCGGGCGTGTGGTTATTAATTTTCA
CCGCCCTTCCAATACGTGTATTTTACAGACCAGCCCAAATTTAGCATTTT
GGCTTACAAAGCTTCTCGCCGCAAACCGAGAGTCACCGTAAAAGATATAT
TGGTATGCGCCTTACGACTAATGAACTTTTCAACAACAAATGTCAAAAAG
TCGATAACCTGATTCAACCAAGAGTTACTTTGATAATCTGGTCTGTATAA
TACCAACTGACTAAAAATATCTATTTCACAATCTATCACTGGTTAAACTA
TCCTGGTCCATCTGAAACACGGGGCATACGGCTTTTCATTCCTTAAGATG
GAAGGAATACTAACATTGTATGACATGAAAAATTGAATTCAAATTCTTTT
TTCTAGGTTGCCGTTTTTGATCTTGGATTTTGTTTCTATTTACCGTTACG
ATGAACCGATACTGAAACCAAAAAGAAAAACAAAGTGTTGGAAGTTTAAA
TCACACAGTCAATACCACGATGTCGGTCTGAATATTTTTTATTAATTCAA
TTTTGTTTGGAATTTCTAAGTGTTTAGATATTTTGAATCTGGAAAATAAT
GATAAAACGTATCACGGACCCCGACCAGACGGAGTGTAATTTGAATTTTG
AGAAACCTTTTTTTTGCCCACCATGTTTGGGTCACAATATTATTCGTTGA
ATTTCTACATCAGTCTAAACATTATAGTCACATTGAGCTTTTTACGGGAT
AGAATGAACTAAGATCTAGATAAATTATGGAAATTTGAAAGCGAACACTC
CGCTAACAGGGGTCCTGAACCATTAACAGTTAAGGAAAAGCTGGTTTAAG
ATTTCAATGTTTTAAGGTGTTTAAAAGTTAAAGTTTTAAAGTATTTGGAC
AAATATCTTCAAATTTTTATATCGATGACACAAAGGTCGAACGAACTCAA
ATCTTAAAGTTAAAAACGATTTATTTCCACATTATCTGCGAACTTTCTTA
GATGAATGATTTATTTCATTTCCAAACAATAGATCTGAGTTTTTGATTTT
CCTAGAAAATGATGCATTGTGGGATTGTTTCGAGTGGATTACAATATAAA
TCTCTTAGGAATTCCTCGAGGGAATTCTTTTGTAATACACTCGAAACAAT
CCCACAATGCATCGGTCTTTTAGCTCAGCAATTTTGTATTTTGAACGCGA
TTTTGTAAGAGAAAATCGCATATGATTATCATGATCGCCTTCTAGAGTCT
TCTTTGGTAAAGATGTCGTATCGGAAGTTAAGATTTTGAAATGTGGAACT
TTTTGAAAAACTTGTTGCGTGTTTTTAAAGTCTCGTGTTGTTTGTGCTGT
GGTTTGGACTTTCCCATGGTTGTATCAAATTTGGCAAGATGGTGCTTTTT
TAAGCAATATAGTAGGTGATTCGCGACTCAAACTGAATAATTACAAATTT
TTTTTTCATCAAATCGTCTTGCAGCTTAAGTTTCACGTTCAATTCGGAAT
TGCCATCGTAATTATGGTGTTTATTCACGAAATTGGAAACGAGATTTTAG
GTCACTGAAGTGGTGTGATAGTTCTTATTCATATTTTCAGAAATTTTCCT
TCTCCAAAGTATCTATTCTCTTTTTGAGGCTTTGACTTCTTCTTGTCAAA
CTATTGCCATAGCTTTGAGTAATAAAAATAGAAATATTGAACATTTTTAT
TTCTTCTCTTGCAATGATTCCAGTATTCACCATCCACTACCGCGAGAACT
TGCCAGTTCCTCTAGTGATCATCTCTGTGCAATCCATAACGCTTATCATT
ATAACAAGCTTCTGCATGATTCTGAATCCTTTTAATAAATCTTTCTTTTA
ATCGTCACTATTTCTTAATTCATTATATCATAATAAGGTTAAAACCCCAC
ACCATGTACATAACATACAAACTTCAGAAATTTCTTGAAAGGTCAAAAGT
CAAAAATAAAAATCAAGATTTTATCAAATTCTAACCAAACCAGACAACAT
TAAACATACAACTCCACTAAATTTAAAAAGGATTTAAAATAACATGGAAA
AATGTTTGGGTTTTAATCGAGCTAGGTTTGACTTTTGAAGCATCAAAATT
TGTCCCATAAAAGATAAGTAGTAGAATTGTACAANTTGTTGTCATATGAT
GTGGACTTTACACTTTATAAAAAATCTGTATAAGAACTGAACGAAATAAT
TCGATAATGAATCAAATTTTAATAATCTAAACGATTTTAAAGATGTTTCT
TATGCTGCATTTCACTTTTATCATTTGGCTCAAATTAACTTTCAATCTTC
TTCATTTTTAGAATACCGTACCGTTCGCCGCAGCTCTAACTTTTCTGAAC
ATACTGTTAACCGGTAAGTTCAATCAAAAACAAACTTTTTCGATGATCTC
TAAATTTTGTTTTTGAATCGAAATCTTCCAATGTTTCGACTCCATTACAT
ACTTTTCGCTTGACACAGCGGGCGTAGGGTTAATAATTTTCACCGCCCTT
CCAATACGTGTATTTTACAGACCAGCCCAAATTTAGCATTTTGGCTTACA
AAACTTCTCGCCGTGAACCGAGAGTCGCCGTAAAAGATATATATTGGTAT
GCGCCTTTCGACTAATGAACTTTTCAACAACAAATGTCAAAGTCGATAAC
CTGATTCAACCAAGAGTTACTTTGATAATCTGGTCTGTAAAATACCAACT
GACTAAAAATATCTATTTCTCAATCTATCACTGGTTAAACTATCCTGGTC
CATCTGAAACACGGGGCATACGGCTTTTCATTCCTTAACCCTATTCATAC
TAGGCTTTTAGGGGCGGTTCAGAACTAGGGGGGGGCTTTTCCTGTACCAC
CCCTTAACTTTTGATCTAGTGGGTCTTTTTTGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGAAAATTTCACGGCAAAAGCTCTATTATTTCATGAACTATTACCAA
TAGTTTGACCTCCGAACAGAAAGAGCCCCCCCCTAGTACGAATAGGGTTA
AGATGGAAGGAATATTAACATTGTATGACATAAAAAATTGAATTCGAATT
CGTTTTTCTAGGTTGCCGTTTTTAATATTGGATTTTGTTTCTATTTACCG
TTACGAAAAATGAATACTGAAACCAAAAAGACAATGTTAGAAGTTTAAAT
CACGCAGTCAATACCACGATGTCGGTCTGAATATTTTTTATTAATTCTAT
TTTGTTTGGAATTTCTAAGTGTTTAGATATTTTGAATCTGGAAAATAATG
ATATTACGTATCACGGACCCCGACCAGCCGGAGTGTAATTTGAATTTTGA
GAAACCTTTTTTTGCCCACCATGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061139-exon-scaffold_354-1575043694:83493..83934 | TCONS_00061139-exon-scaffold_354-1575043694:83493..83934 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1575043694:80722..80773 | TCONS_00061139-exon-scaffold_354-1575043694:80722..80773 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1575043694:79258..79523 | TCONS_00061139-exon-scaffold_354-1575043694:79258..79523 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1510915933:83493..83934 | TCONS_00061139-exon-scaffold_354-1510915933:83493..83934 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1510915933:80722..80773 | TCONS_00061139-exon-scaffold_354-1510915933:80722..80773 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1510915933:79258..79523 | TCONS_00061139-exon-scaffold_354-1510915933:79258..79523 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1491911889:83493..83934 | TCONS_00061139-exon-scaffold_354-1491911889:83493..83934 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1491911889:80722..80773 | TCONS_00061139-exon-scaffold_354-1491911889:80722..80773 | Clytia hemisphaerica | exon |
| TCONS_00061139-exon-scaffold_354-1491911889:79258..79523 | TCONS_00061139-exon-scaffold_354-1491911889:79258..79523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:79258..83934 - |
Blast
The following BLAST results are available for this feature:
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