TCONS_00061134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061134
Unique NameTCONS_00061134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061134 ID=TCONS_00061134|Name=TCONS_00061134|organism=Clytia hemisphaerica|type=transcript|length=425bp
TAGCAATGCAAACTAAGGATGTTTTAAACCCGGAAAACTTGAATAACAGG
CGTTATTGCAATCTCAAATGATGTTTTCGAATTTATTCAAACAAGTATCA
TTAGaaatccAAGAGTTAATCGAGAAACATTCCTTCAAAATTGACGAGGA
ATTAAATTTCCCATGCATAACAGCACCGCACATATTTAGGGTGACGTATG
AACAAGACGTGAAAAGTGCAACGGCCACTGGGCCAAATGTTGTATTTACA
TGACAAAGCTTTACGACGATTTATATGATGgtttatgttgaaaaataaga
aaatttgaacatCGAAAATTAGAGAGTTGTTCTCATTTCATACCGATTTC
TCCTTagagtttaaaattttgtgAGAATCTTTTTGACCTGCAAATACTTA
AAATCTTCTAAGTTAGGAATTAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_354:28231..31407-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061134 ID=TCONS_00061134|Name=TCONS_00061134|organism=Clytia hemisphaerica|type=transcript|length=3177bp|location=Sequence derived from alignment at scaffold_354:28231..31407- (Clytia hemisphaerica)
TAGCAATGCAAACTAAGGATGTTTTAAACCCGGAAAACTTGAATAACAGG
CGTTATTGCAATCTCAAATGATGTTTTCGAATTTATTCAAACAAGTATCA
TTAGGTATTACCGTTTGGTATGACTTTGTACGGTATGGAACCCAATTCAA
GATTTTCAATGTTTGAATGTTATTACTATATTTACTATAATGGCTGATGT
TATTCACCAAAGAAAACAACGCACTCTGAGCGTTGCATTTAAATCTGTTG
AAGCATTCATAAACTAAAACAAGCTCAAAGCAAGACATCCTGAACTTCTC
AACAGTTGGCATTTTACTTGAGGGCATAAACCCGGAGGGGGGGGGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGGGGCATAAACGTAAA
TAAGTTTTGAAAAATGAATCACTTCATATAATTTTTTAGCCTAATCGTGG
TTTTTCTTTTTTAGAAATCCAAGAGTTAATCGAGAAACGTAAGTTTTAAC
CTCCAATCAGAAATTATTTTTGCCGATTTTTAAGTGCAAGATAAAGTATG
CTTTTAAGGTGTGGAGTAGTAACTAATTATCACAAATTTTAAGGATTGTT
GCAATAAGTTTCTTTTCAATTATTTTTCTTTGTTTGTACTTTTCATTTTG
GTATCAAAACATGTAATCTTTCTTAATTCAATTTTAGATTCCTTCAAAAT
TGACGAGGAATTAAATTTCCCATGCATAACAGCACCGCACATATTTAGGG
TGACGTGTAAGTATTATTAAGACGGCCGACGACGTCAAAAGCATCAATCT
TACTCATTAACTTTCAATCCTAGTCAGTTTTTGGCATTTTAGCTAAATTT
AAGCCGTTTTTGAATAGTTTAAAAGGTTGATACATATTTGGAATCGGTGA
GGTTCAAATATCTAAAAAAGTGTTATGTTCTGATTCCGATTCCGAAATTT
TTTTTTCATCTTCCGATATTTTTCTTCTTCATTTTTAAAATCTTTCAGAA
ATCTTAAGAGTATTCCTCTTAACCCTATTCGGCCTAGGGGGGGGGGGCTC
TTTCTGTTCGGAGGTCAAACTATTGGTAATAGCTCCTGAGATAATAGAGC
TTCTGCCTTGAAATTTTCTGTAAATTCCTAACTTTTATTTAGCTTCAAAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTCAATGTCAAATATATCGTTTAAACCGTAATTTATT
GAATATTTAGGATAAAATAAGCATTTTAAACTCAGACAACTTTTTTCTAA
AGCTTTTGTTAGAATAAAATAGCTATTTATAAGAACAAAGGAAAATTTTG
GTATTTGCTCACTTTGGGCATGCTGAGTGACGTCATCAAAAAATTTTTTT
GTCAAAAGTTACCTTACGTGACAAAGATCTTGTGTGCTAAATTTCATCCA
AAAAGACCCACTAGATCAAAAGTTAAGGGGTGGTACAGGAAAAGCCCCCC
CCCCCCCCAGTTCTGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCTAAAAGCCTAGGTTGAATAGGGTTAAAGTTATACAT
ATCCATTCAATGCTTTATAACTTTTTACTATAGCATATATTATGCTTATT
AAAATGAGTGTCGAGAAAATGTTCAGAAAAATGTTTCCGACATTCTTTTC
ATACGATCTTTAATTATCTTACTCTTTACAGATGAACAAGACGTGAAAAG
TGCAACGGCCACTGGGCCAAATGTTGTATTTACATGACAAAGCTTTACGA
CGTAAGATTAAATGAAAACTGAAATATCTACTGCTTCAGTCTTTATTGTT
TACTTTAGAGGGCCCCTCAGCAGTTTGCGTGATTGCATGAATGGGCATTT
TCGGTTGCGCGAAAATAAAAAACAATGCGTGAATGCGTGAATTAAATTGC
TCTTTAAACTTAGGATGTTTCCCGTAAATTACAAAGTTTATGACGTTTGC
TGGTCCTTTACCCCTGGGATTATTGATTTTTTGAACGAATTAATTTATTA
TTCTTTATTCTTTTTTCAGGATTTATATGATGGTTTATGTTGAAAAATAA
GAAAATTTGAACATCGAAAATTAGAGAGTTGTTCTCATTTCATACCGATT
TCTCCTTAGAGTTTAAAATTTTGTGAGAATCTTTTTGACCTGCAAATACT
TAAAATCTTCTAAGTTAGGAATTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038358XLOC_038358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061134-exon-scaffold_354-1575043694:31304..31407TCONS_00061134-exon-scaffold_354-1575043694:31304..31407Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1575043694:30820..30843TCONS_00061134-exon-scaffold_354-1575043694:30820..30843Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1575043694:30552..30620TCONS_00061134-exon-scaffold_354-1575043694:30552..30620Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1575043694:28657..28726TCONS_00061134-exon-scaffold_354-1575043694:28657..28726Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1575043694:28231..28388TCONS_00061134-exon-scaffold_354-1575043694:28231..28388Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1510915933:31304..31407TCONS_00061134-exon-scaffold_354-1510915933:31304..31407Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1510915933:30820..30843TCONS_00061134-exon-scaffold_354-1510915933:30820..30843Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1510915933:30552..30620TCONS_00061134-exon-scaffold_354-1510915933:30552..30620Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1510915933:28657..28726TCONS_00061134-exon-scaffold_354-1510915933:28657..28726Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1510915933:28231..28388TCONS_00061134-exon-scaffold_354-1510915933:28231..28388Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1491911889:31304..31407TCONS_00061134-exon-scaffold_354-1491911889:31304..31407Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1491911889:30820..30843TCONS_00061134-exon-scaffold_354-1491911889:30820..30843Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1491911889:30552..30620TCONS_00061134-exon-scaffold_354-1491911889:30552..30620Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1491911889:28657..28726TCONS_00061134-exon-scaffold_354-1491911889:28657..28726Clytia hemisphaericaexon
TCONS_00061134-exon-scaffold_354-1491911889:28231..28388TCONS_00061134-exon-scaffold_354-1491911889:28231..28388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:28231..31407 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.221499	0	0.211168	0.988463	3.73705	0.857211	0.665624	2.51594	0.436947	0.68066	1.95858	0.400354	0	0.758277	2.9682	0.730826	1.58805	1.62665	0	0.171214	0	0	0	0.240358	0.182303	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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