TCONS_00061132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061132
Unique NameTCONS_00061132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061132 ID=TCONS_00061132|Name=TCONS_00061132|organism=Clytia hemisphaerica|type=transcript|length=637bp
AATCAAATAACAACTTCAAAAGAAGATAATTCATTCAAAAAAGTACAGTT
GACAAAATGATCAAGTTACTCTTAATCTTTGGCCTTCTTGGTCTAACATA
CGGGCAATGCCCCAGATATCCACACTGGCCACGTGAATTTCGTTGGTCAT
ATGCAGGACATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCA
TCAGATCCATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACC
AGNNATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCATCAGA
TCCATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACCAGCCT
ACATTGCCAGTGGTATGAGATGGAGTTACGCTGGTCCAATCTCTGGCATG
AGATGCACACGAATCATCGAGTTCAGCTCACCAGCCAAACATACATGGCG
AGATAACTACCTATGCGTTCCACATCACAGCCCCTTCATTTTCGAATGGT
CGATGGCTGGGCCAATCCCTGGAAAGCATTGCATACAATGGATTGAACCA
TCAGAACCTTTGGGTCATACATGGCGTGATAACTATTTGTGCGGTACCGT
GTTCCCACGTGCACGACTCACCTACAATTAATTTATT
Run BLAST on NCBI

protein sequence of TCONS_00061132-protein

>TCONS_00061132-protein ID=TCONS_00061132-protein|Name=TCONS_00061132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MHKNFGTIRSIHMGGQLLLRANRTXXLGNGWRCTRILEPSDPYTWADNYF
CERTGPAYIASGMRWSYAGPISGMRCTRIIEFSSPAKHTWRDNYLCVPHH
SPFIFEWSMAGPIPGKHCIQWIEPSEPLGHTWRDNYLCGTVFPRARLTYN
Run BLAST on NCBI

transcript from alignment at scaffold_354:1216608..1217388+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061132 ID=TCONS_00061132|Name=TCONS_00061132|organism=Clytia hemisphaerica|type=transcript|length=781bp|location=Sequence derived from alignment at scaffold_354:1216608..1217388+ (Clytia hemisphaerica)
AATCAAATAACAACTTCAAAAGAAGATAATTCATTCAAAAAAGTACAGTT
GACAAAATGATCAAGTTACTCTTAATCTTTGGCCTTCTTGGTCTAACATA
CGGGCAATGCCCCAGATATCCACACTGGCCACGTGAATTTCGTTGGTCAT
ATGCAGGACATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCA
TCAGATCCATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACC
AGNNATCTTGGTAATGGCTGGAGATGCACAAGAATTTTGGAACCATCAGA
TCCATACACATGGGCGGACAATTACTTTTGCGAGCGAACAGGACCAGCCT
ACATTGCCAGTGGTATGAGATGGAGTTACGCTGGTAAGTGTTGTAACGTT
TTTCGTCGTTGGACGTTTTTCGGACCTCACTTTAGTTTCTTTGGAATCTC
AGACTTTTACTAACTTCCTGTTAGCAACAgaaactaatttttgaaaaatt
gataagTATTTTTTCATCTCACAACAGGTCCAATCTCTGGCATGAGATGC
ACACGAATCATCGAGTTCAGCTCACCAGCCAAACATACATGGCGAGATAA
CTACCTATGCGTTCCACATCACAGCCCCTTCATTTTCGAATGGTCGATGG
CTGGGCCAATCCCTGGAAAGCATTGCATACAATGGATTGAACCATCAGAA
CCTTTGGGTCATACATGGCGTGATAACTATTTGTGCGGTACCGTGTTCCC
ACGTGCACGACTCACCTACAATTAATTTATT

Coding sequence (CDS) from alignment at scaffold_354:1216608..1217388+

>TCONS_00061132 ID=TCONS_00061132|Name=TCONS_00061132|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_354:1216608..1217388+ (Clytia hemisphaerica)
ATGCACAAGAATTTTGGAACCATCAGATCCATACACATGGGCGGACAATT
ACTTTTGCGAGCGAACAGGACCAGNNATCTTGGTAATGGCTGGAGATGCA
CAAGAATTTTGGAACCATCAGATCCATACACATGGGCGGACAATTACTTT
TGCGAGCGAACAGGACCAGCCTACATTGCCAGTGGTATGAGATGGAGTTA
CGCTGGTCCAATCTCTGGCATGAGATGCACACGAATCATCGAGTTCAGCT
CACCAGCCAAACATACATGGCGAGATAACTACCTATGCGTTCCACATCAC
AGCCCCTTCATTTTCGAATGGTCGATGGCTGGGCCAATCCCTGGAAAGCA
TTGCATACAATGGATTGAACCATCAGAACCTTTGGGTCATACATGGCGTG
ATAACTATTTGTGCGGTACCGTGTTCCCACGTGCACGACTCACCTACAAT
TAAATGCACAAGAATTTTGGAACCATCAGATCCATACACATGGGCGGACA
ATTACTTTTGCGAGCGAACAGGACCAGNNATCTTGGTAATGGCTGGAGAT
GCACAAGAATTTTGGAACCATCAGATCCATACACATGGGCGGACAATTAC
TTTTGCGAGCGAACAGGACCAGCCTACATTGCCAGTGGTATGAGATGGAG
TTACGCTGGTCCAATCTCTGGCATGAGATGCACACGAATCATCGAGTTCA
GCTCACCAGCCAAACATACATGGCGAGATAACTACCTATGCGTTCCACAT
CACAGCCCCTTCATTTTCGAATGGTCGATGGCTGGGCCAATCCCTGGAAA
GCATTGCATACAATGGATTGAACCATCAGAACCTTTGGGTCATACATGGC
GTGATAACTATTTGTGCGGTACCGTGTTCCCACGTGCACGACTCACCTAC
AATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038356XLOC_038356Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061132-proteinTCONS_00061132-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061132-exon-scaffold_354-1491911889:1216608..1216990TCONS_00061132-exon-scaffold_354-1491911889:1216608..1216990Clytia hemisphaericaexon
TCONS_00061132-exon-scaffold_354-1510915933:1216608..1216990TCONS_00061132-exon-scaffold_354-1510915933:1216608..1216990Clytia hemisphaericaexon
TCONS_00061132-exon-scaffold_354-1575043694:1216608..1216990TCONS_00061132-exon-scaffold_354-1575043694:1216608..1216990Clytia hemisphaericaexon
TCONS_00061132-exon-scaffold_354-1491911889:1217135..1217388TCONS_00061132-exon-scaffold_354-1491911889:1217135..1217388Clytia hemisphaericaexon
TCONS_00061132-exon-scaffold_354-1510915933:1217135..1217388TCONS_00061132-exon-scaffold_354-1510915933:1217135..1217388Clytia hemisphaericaexon
TCONS_00061132-exon-scaffold_354-1575043694:1217135..1217388TCONS_00061132-exon-scaffold_354-1575043694:1217135..1217388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:1216608..1217388 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105108	0	0	0	0.314667	0.525856	0	0	3.18731	1.00606	3.16345	8.27171	18.756	16.1747	11.7824	13.3273	5.23772	4.8331	3.43715	2.92079	0.110793	0	0	0.0864072	0	0.282228	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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