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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061131 ID=TCONS_00061131|Name=TCONS_00061131|organism=Clytia hemisphaerica|type=transcript|length=765bp
GTTCGAATGTGATGTCAAAAATCAAGAGGATATTGAcaactttttggatt
tttatatgAATGAGACgaatgaaatcatgaaaataaaagtaaaaaaaaca
ccagGTCAGAAGAGCATTTATGCAATCAAATCAATTTACCGATGCCATTT
TGATACAAGATATGAGAATACCAGAGACGCTGAATCTATTTTGAGGAAGG
ACCCATCAAAACGATTCAAGAATACAATGTgtccttttcaaatttcattc
aaagTAATCAAATGCCCCTCTCATTCGAATGCCTCTTGTCAACTCACTAT
GACTTACGAGCATAACCACCCAGTGAATTCCTTAGAAGCACTAAGCTTTA
AAAGAATTTCGGAGGAAATTCTGATCGAAGTTCAGAACCTTTTTGAAAAG
GGCAATACACCATCCCAAGCATATCAGGAATTTCTCAGAACTCTCAAGCT
ACATTGTGAAGACCAAATCAAATTTCATTTGAGTAAAGCTGACAGATCAA
AATGCCCACGACGAAGAGACTTTAATTCACTTTATATAAAgttttgcaaa
gaaaaatttgGTGGAAAGAATGGAGCTGATATGTTTGAGAAACTTAAAGA
AAGAATTAATCAGTTTGAAGAAAACATGGACGGGATAAAAGTCGCATACC
AGCTTTACAACGAGGACGAAAATTCGGCATTGATTTTGGCTATTTTGACA
CCTTTGATGATAAGAGTCCACAGAATGGTCAGGGAATCTTCAGAAATAGT
TTTCATTGACTCCAC Run BLAST on NCBI protein sequence of TCONS_00061131-protein >TCONS_00061131-protein ID=TCONS_00061131-protein|Name=TCONS_00061131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
FECDVKNQEDIDNFLDFYMNETNEIMKIKVKKTPGQKSIYAIKSIYRCHF
DTRYENTRDAESILRKDPSKRFKNTMCPFQISFKVIKCPSHSNASCQLTM
TYEHNHPVNSLEALSFKRISEEILIEVQNLFEKGNTPSQAYQEFLRTLKL
HCEDQIKFHLSKADRSKCPRRRDFNSLYIKFCKEKFGGKNGADMFEKLKE
RINQFEENMDGIKVAYQLYNEDENSALILAILTPLMIRVHRMVRESSEIV
FIDS Run BLAST on NCBI transcript from alignment at scaffold_354:1198819..1200594+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061131 ID=TCONS_00061131|Name=TCONS_00061131|organism=Clytia hemisphaerica|type=transcript|length=1776bp|location=Sequence derived from alignment at scaffold_354:1198819..1200594+ (Clytia hemisphaerica)
GTTCGAATGTGATGTCAAAAATCAAGAGGATATTGAcaactttttggatt
tttatatgAATGAGACgaatgaaatcatgaaaataaaagtaaaaaaaaca
ccagGTCAGAAGAGCATTTATGCAATCAAATCAATTTACCGATGCCATTT
TGATACAAGATATGAGAATACCAGAGACGCTGAATCTATTTTGAGGAAGG
ACCCATCAAAACGATTCAAGAATACAATGTgtccttttcaaatttcattc
aaagTAATCAAATGCCCCTCTCATTCGAATGCCTCTTGTCAACTCACTAT
GACTTACGAGCATAACCACCCAGTGAATTCCTTAGAAGCACTAAGCTTTA
AAAGAATTTCGGAGGAAATTCTGATCGAAGTTCAGAACCTTTTTGAAAAG
GGCAATACACCATCCCAAGCATATCAGGAATTTCTCAGAACTCTCAAGCT
ACATTGTGAAGACCAAATCAAATTTCATTTGAGTAAAGCTGACAGATCAA
AATGCCCACGACGAAGAGACTTTAATTCACTTTATATAAAgttttgcaaa
gaaaaatttgGTGGAAAGAATGGAGCTGATATGTTTGAGAAACTTAAAGA
AAGAATTAATCAGTTTGAAGAAAACATGGACGGGATAAAAGTCGCATACC
AGCTTTACAACGAGGACGAAAATTCGGCATTGATTTTGGCTATTTTGACA
CCTTTGATGATAAGAGTCCACAGAATGGTAAAGACAACTATATTAcatta
cattttttgaattttaagacaTGGATTtccgagtggggatgaaatgaaag
ttaatttcccagtggggcttaAATTACAGGGTATTTCCGGGTATTTTCCG
GGTATTTTCCCAGTGGggaccaaatttttgccaaattttccagtggggat
ggggtcctagtgggtctgtgaaacaggggtatAATAATTGATTATTcaca
agagcagccaccggctaggaagCCTAGGAAGTATGAAATACTTGTTCTTG
AGGTccttttttcctggaaaaaacgAACTGTTTTGTATCCTGGactctcc
tggattatatcattTGCTCTGGGAAAAAATGAGACTCCTGTATATCTGTT
CTCTTGAAATATTATGCTNcggctaggaagtatgaaataCTTGTTCTTGA
GGTccttttttcctggaaaaaacgAGCTGTTTTGTATCCTGGactctcct
ggattatatccTGTATATCTGTTCTCTTGAAATATTATgatcctggaaaa
atataacagctatttTCTAAGAAAGTTATAATGTTTCTAGAAAACTTACT
ACAATACTGGCAATAATATttgggaaaaaagggaaattcccacgaaatct
gaaatctgaaaaccaaaaataatttgtaagCCCTCTAAATTAGATTGgaa
tggtagagttttaactctgagcttGAACATTAGACTTAACAcctaggacc
ttaggatctgaggatccaaaagtccaagaatggtccaacagggctcagaa
tatagccaaTAAGTCCATTAACCccacccaaatcgaaatatgcggatgaa
tttatcaattagcccaaaaacgactttctcgcccgaactttaaattgtga
aaaacgtGGAATTAACCACAAATCTCAATATATCATGGCCAGCATTGTAG
CTTCATGTTTAGCCTTGCTCTTTCACATCACAGCAATCAACAAGTCTTAC
caatattaaattttcattatgTTTTATTATGTTTTTAGGTCAGGGAATCT
TCAGAAATAGTTTTCATTGACTCCAC Coding sequence (CDS) from alignment at scaffold_354:1198819..1200594+ >TCONS_00061131 ID=TCONS_00061131|Name=TCONS_00061131|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_354:1198819..1200594+ (Clytia hemisphaerica)
TTCGAATGTGATGTCAAAAATCAAGAGGATATTGAcaactttttggattt
ttatatgAATGAGACgaatgaaatcatgaaaataaaagtaaaaaaaacac
cagGTCAGAAGAGCATTTATGCAATCAAATCAATTTACCGATGCCATTTT
GATACAAGATATGAGAATACCAGAGACGCTGAATCTATTTTGAGGAAGGA
CCCATCAAAACGATTCAAGAATACAATGTgtccttttcaaatttcattca
aagTAATCAAATGCCCCTCTCATTCGAATGCCTCTTGTCAACTCACTATG
ACTTACGAGCATAACCACCCAGTGAATTCCTTAGAAGCACTAAGCTTTAA
AAGAATTTCGGAGGAAATTCTGATCGAAGTTCAGAACCTTTTTGAAAAGG
GCAATACACCATCCCAAGCATATCAGGAATTTCTCAGAACTCTCAAGCTA
CATTGTGAAGACCAAATCAAATTTCATTTGAGTAAAGCTGACAGATCAAA
ATGCCCACGACGAAGAGACTTTAATTCACTTTATATAAAgttttgcaaag
aaaaatttgGTGGAAAGAATGGAGCTGATATGTTTGAGAAACTTAAAGAA
AGAATTAATCAGTTTGAAGAAAACATGGACGGGATAAAAGTCGCATACCA
GCTTTACAACGAGGACGAAAATTCGGCATTGATTTTGGCTATTTTGACAC
CTTTGATGATAAGAGTCCACAGAATGGTCAGGGAATCTTCAGAAATAGTT
TTCATTGACTCCTTCGAATGTGATGTCAAAAATCAAGAGGATATTGAcaa
ctttttggatttttatatgAATGAGACgaatgaaatcatgaaaataaaag
taaaaaaaacaccagGTCAGAAGAGCATTTATGCAATCAAATCAATTTAC
CGATGCCATTTTGATACAAGATATGAGAATACCAGAGACGCTGAATCTAT
TTTGAGGAAGGACCCATCAAAACGATTCAAGAATACAATGTgtccttttc
aaatttcattcaaagTAATCAAATGCCCCTCTCATTCGAATGCCTCTTGT
CAACTCACTATGACTTACGAGCATAACCACCCAGTGAATTCCTTAGAAGC
ACTAAGCTTTAAAAGAATTTCGGAGGAAATTCTGATCGAAGTTCAGAACC
TTTTTGAAAAGGGCAATACACCATCCCAAGCATATCAGGAATTTCTCAGA
ACTCTCAAGCTACATTGTGAAGACCAAATCAAATTTCATTTGAGTAAAGC
TGACAGATCAAAATGCCCACGACGAAGAGACTTTAATTCACTTTATATAA
AgttttgcaaagaaaaatttgGTGGAAAGAATGGAGCTGATATGTTTGAG
AAACTTAAAGAAAGAATTAATCAGTTTGAAGAAAACATGGACGGGATAAA
AGTCGCATACCAGCTTTACAACGAGGACGAAAATTCGGCATTGATTTTGG
CTATTTTGACACCTTTGATGATAAGAGTCCACAGAATGGTCAGGGAATCT
TCAGAAATAGTTTTCATTGACTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061131-exon-scaffold_354-1491911889:1198819..1199545 | TCONS_00061131-exon-scaffold_354-1491911889:1198819..1199545 | Clytia hemisphaerica | exon |
| TCONS_00061131-exon-scaffold_354-1510915933:1198819..1199545 | TCONS_00061131-exon-scaffold_354-1510915933:1198819..1199545 | Clytia hemisphaerica | exon |
| TCONS_00061131-exon-scaffold_354-1575043694:1198819..1199545 | TCONS_00061131-exon-scaffold_354-1575043694:1198819..1199545 | Clytia hemisphaerica | exon |
| TCONS_00061131-exon-scaffold_354-1491911889:1200557..1200594 | TCONS_00061131-exon-scaffold_354-1491911889:1200557..1200594 | Clytia hemisphaerica | exon |
| TCONS_00061131-exon-scaffold_354-1510915933:1200557..1200594 | TCONS_00061131-exon-scaffold_354-1510915933:1200557..1200594 | Clytia hemisphaerica | exon |
| TCONS_00061131-exon-scaffold_354-1575043694:1200557..1200594 | TCONS_00061131-exon-scaffold_354-1575043694:1200557..1200594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1198819..1200594 + |
Blast
The following BLAST results are available for this feature:
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