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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061123 ID=TCONS_00061123|Name=TCONS_00061123|organism=Clytia hemisphaerica|type=transcript|length=1425bp
GTTTAAAAACAAGAGATAGTTCAAGttgGACATTGATTAGTAAAAATGCC
AGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAAGAACGGA
ATATATCATACAGGAAATCAGCCATCTTTTGGGACCAGGTACACAAATAT
GCCAATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTATTATCTGT
AATGGAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATCACTGGGATTG
CGACGATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGAAAAACGA
AATGAACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGTTGAATTT
AATTTCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCTGAAATCC
AAGATGCAATGTTGGATGAACCTTTTACGAGCTCtgttaaaaaattgaag
aaacagCGAGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAATCTACAGA
TTGTAAGATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTCCAAAAGA
CAAACGcactgaaaaatcaaaagaaaaatcaaaagaaaacagatAGACTA
CAATTATGGGCTTTAAGTACTAATCTGAAAATGGAAGTTTACAAGGATGA
GCagaaatggttgaaatttaaaaaagaagaaggaatAACGCGTACTTTTG
ATGATAGTGAAAGTGTAAATGATAGCTGTGAGGATAAAGTGCTGAAAAAC
AGTGACGGTCGAGCTATGGATCAGATTGATTCTGAAAGAACCACCAAATT
ATCGGAGGAAGAAATGGATTGGGCTATAGACTTAGACAGACCATTTGAAT
CACGTAGATCATTTGACCAAACAGATGGTGGTAGCATTAAACCAATGCCG
AAGTCAACACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAATTCCCTT
CTTGATGAATAATACAACGGATACGAATCATATCAAGCCTGATCATGATT
TTATCGCAATTCGAGTGCAACCATCTGGTAAATCAAACATAGAATCTAGC
TCGAAGTGTTTAAATATACCACAGAATCCCGATGTAACTTTGGTGCCACT
TACTTCGGAGAAACACCTAATTGGCGACCATGAAGACCATAGTCAATTAT
CTCGACAGAACGCGGTAATCAGTGATCATTTGAATAACAACGATAACGAA
GAATCACTCAAAAACAACTGAAGgactattttttttaatttaatttgtaT
AGGTTCAAAATGTGCtatttatatccatacaggagGTTGGACAagcattt
ccagagggtaaattcgaaaagaatttccagggggtctaaggaagtctttt
ttttttctttttttccagggtgtaaaaagttattccaaaaattccagtgg
gtaAATGACTAATTTTCGTTCGTCA Run BLAST on NCBI transcript from alignment at scaffold_354:1111732..1114863+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061123 ID=TCONS_00061123|Name=TCONS_00061123|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at scaffold_354:1111732..1114863+ (Clytia hemisphaerica)
GTTTAAAAACAAGAGATAGTTCAAGGTAAGTCTAAAGTTCGAAAGAGACT
TGTTTTTTTTAGGACTAGTTTCTATTTTAGAATTTTCGCTACCGAGTCTG
CTTTTAGTATATTACAATAATGGAGTCTCCTTACTTCGAATAAGATTTTT
GGTTCTATCATCAGTTACTTTAAAAACagctccataactcgaaattcaAC
TTTAACTATAAATCTCTCTAATATAAGTTTGAATATCATAAaactttatt
tcttaggtttcagcagtagcgtagacaggaggggtgcataataattatct
tttcataatataaaaagataattactgtgtcataaaaatctactcCTACA
CAATTTTTGCGTtcctcttgtctacgctactggttTTAGCTCTTTCAACC
ATGATCTTTTACCTTCTAAATGAGATTTAATACTTAATCCTTTAGAATTA
ACTCCACAGATAAATCGTCAAAAATAGGGCGGAAAAGATCGCGGCGATCT
TTTGTACATGCATACTGGTATAGGACCGAAAAAAATGAGAGATCTCACTT
AATGGGTTAAAGACCCTAGCCAATATTTTTGAAGCCTATGTAATCTTTTC
TAAAGAGATTCCATCGTTATTTAGCGGCCAATATAGGTGAAAAGCGGTTT
AAATAAGGACTAGAGCGTAAATCTGACCAAGATTAACCTAGAGCTGGCGT
AAAAAGGGTACGTTAAGCTAGGTGGAAATTTTAATCCCCTGCTTACTATT
ACTACTTTAGTTTTTTTATGTCATGAAACTTATGCCATAGTCTAAGACAA
GTTTTATCTAAaaaggaacaaacgtgaagacgggagtTTTTTCGGGGTAG
CTGTTGTCTTAAAACACAGACTCTATTGTCCGCCacgcaacatattacgt
tttataatatacaaactatgttatatcataataatatattatctGGACGA
AAAGCATCGTCTAATGCGAGTGTGTTTACTCAAGTATTTACTTTGTTTAT
GTATAAGacggatacacgtttttttataagaacatccaaaagttttgaag
ccttcgtaTGTTTTTAGCCTTTagagttttcagcctaaaaatattcttaa
aatgttctaattttCGGCTTTTTTTGAGTACTTTTGTCCATTTactaaga
aattaggtgttttagTGTCcaccaagccttaaaatgttcttaacttgttc
ttaatatcttATTGGCCagtgaagccttatgttcttattaaaaaacgtgt
agtgccCTATATTTACCTACAAACTTACGATTATGACTTCTAATTTTCTA
AATACACTCGCAATAGTGTATTTTacattttgtaatattttgttttgctt
taaGGAGATGGGTTTTACCTCATCCCGGGGAGAGGGCACTCGATTTAAAA
ACAACTGAGCGTGCGGTCTAAAATTAGGCCTTTAATATCGGACCCTTGCA
ctgcagagaaaattttgccaaatttgagtGAGTTTGGGCGGGAAATGGAC
GCTTACGGTGCATCTTCTTGAAAGTCTTTGACTATTCAAGGGCAAAATAT
Gatcagatttttcaaactttacacccttacagtgcaattttttttccttg
ctcatttcgacccttagaGCACTTTGAAAAGCTTGGAAAAAgaaccctta
agggccgcacatACGGTAGATCGTTTACTGTACCATCCTTGGGGGACTTT
ATATAACCTAtggattttgttttttcttttagttgGACATTGATTAGTAA
AAATGCCAGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAA
GAACGGAATATATCATACAGGAAATCAGCCATCTTTTGGGACCAGGTACA
CAAATATGCCAATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTAT
TATCTGTAATGGAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATCACT
GGGATTGCGACGATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGA
AAAACGAAATGAACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGT
TGAATTTAATTTCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCT
GAAATCCAAGATGCAATGTTGGATGAACCTTTTACGAGCTCtgttaaaaa
attgaagaaacagCGAGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAAT
CTACAGATTGTAAGATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTC
CAAAAGACAAACGcactgaaaaatcaaaagaaaaatcaaaagaaaacaga
tAGACTACAATTATGGGCTTTAAGTACTAATCTGAAAATGGAAGTTTACA
AGGATGAGCagaaatggttgaaatttaaaaaagaagaaggaatAACGCGT
ACTTTTGATGATAGTGAAAGTGTAAATGATAGCTGTGAGGATAAAGTGCT
GAAAAACAGTGACGGTCGAGCTATGGATCAGATTGATTCTGAAAGAACCA
CCAAATTATCGGAGGAAGAAATGGATTGGGCTATAGACTTAGACAGACCA
TTTGAATCACGTAGATCATTTGACCAAACAGATGGTGGTAGCATTAAACC
AATGCCGAAGTCAACACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAA
TTCCCTTCTTGATGAATAATACAACGGATACGAATCATATCAAGCCTGAT
CATGATTTTATCGCAATTCGAGTGCAACCATCTGGTAAATCAAACATAGA
ATCTAGCTCGAAGTGTTTAAATATACCACAGAATCCCGATGTAACTTTGG
TGCCACTTACTTCGGAGAAACACCTAATTGGCGACCATGAAGACCATAGT
CAATTATCTCGACAGAACGCGGTAATCAGTGATCATTTGAATAACAACGA
TAACGAAGAATCACTCAAAAACAACTGAAGgactattttttttaatttaa
tttgtaTAGGTTCAAAATGTGCtatttatatccatacaggagGTTGGACA
agcatttccagagggtaaattcgaaaagaatttccagggggtctaaggaa
gtcttttttttttctttttttccagggtgtaaaaagttattccaaaaatt
ccagtgggtaAATGACTAATTTTCGTTCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061123-exon-scaffold_354-1491911889:1111732..1111756 | TCONS_00061123-exon-scaffold_354-1491911889:1111732..1111756 | Clytia hemisphaerica | exon |
| TCONS_00061123-exon-scaffold_354-1510915933:1111732..1111756 | TCONS_00061123-exon-scaffold_354-1510915933:1111732..1111756 | Clytia hemisphaerica | exon |
| TCONS_00061123-exon-scaffold_354-1575043694:1111732..1111756 | TCONS_00061123-exon-scaffold_354-1575043694:1111732..1111756 | Clytia hemisphaerica | exon |
| TCONS_00061123-exon-scaffold_354-1491911889:1113464..1114863 | TCONS_00061123-exon-scaffold_354-1491911889:1113464..1114863 | Clytia hemisphaerica | exon |
| TCONS_00061123-exon-scaffold_354-1510915933:1113464..1114863 | TCONS_00061123-exon-scaffold_354-1510915933:1113464..1114863 | Clytia hemisphaerica | exon |
| TCONS_00061123-exon-scaffold_354-1575043694:1113464..1114863 | TCONS_00061123-exon-scaffold_354-1575043694:1113464..1114863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1111732..1114863 + |
Blast
The following BLAST results are available for this feature:
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