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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061121 ID=TCONS_00061121|Name=TCONS_00061121|organism=Clytia hemisphaerica|type=transcript|length=1431bp
GTCATCATTTAAAGACACGAGATAATTCAAGttgGACATTGATTAGTAAA
AATGCCAGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAAG
AACGGAATATATCATACAGGAAATCAGCCATCTTTTGGGACCAGGTACAC
AAATATGCCAATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTATT
ATCTGTAATGGAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATCACTG
GGATTGCGACGATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGAA
AAACGAAATGAACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGTT
GAATTTAATTTCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCTG
AAATCCAAGATGCAATGTTGGATGAACCTTTTACGAGCTCtgttaaaaaa
ttgaagaaacagCGAGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAATC
TACAGATTGTAAGATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTCC
AAAAGACAAACGcactgaaaaatcaaaagaaaaatcaaaagaaaacagat
AGACTACAATTATGGGCTTTAAGTACTAATCTGAAAATGGAAGTTTACAA
GGATGAGCagaaatggttgaaatttaaaaaagaagaaggaatAACGCGTA
CTTTTGATGATAGTGAAAGTGTAAATGATAGCTGTGAGGATAAAGTGCTG
AAAAACAGTGACGGTCGAGCTATGGATCAGATTGATTCTGAAAGAACCAC
CAAATTATCGGAGGAAGAAATGGATTGGGCTATAGACTTAGACAGACCAT
TTGAATCACGTAGATCATTTGACCAAACAGATGGTGGTAGCATTAAACCA
ATGCCGAAGTCAACACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAAT
TCCCTTCTTGATGAATAATACAACGGATACGAATCATATCAAGCCTGATC
ATGATTTTATCGCAATTCGAGTGCAACCATCTGGTAAATCAAACATAGAA
TCTAGCTCGAAGTGTTTAAATATACCACAGAATCCCGATGTAACTTTGGT
GCCACTTACTTCGGAGAAACACCTAATTGGCGACCATGAAGACCATAGTC
AATTATCTCGACAGAACGCGGTAATCAGTGATCATTTGAATAACAACGAT
AACGAAGAATCACTCAAAAACAACTGAAGgactattttttttaatttaat
ttgtaTAGGTTCAAAATGTGCtatttatatccatacaggagGTTGGACAa
gcatttccagagggtaaattcgaaaagaatttccagggggtctaaggaag
tcttttttttttctttttttccagggtgtaaaaagttattccaaaaattc
cagtgggtaAATGACTAATTTTCGTTCGTCA Run BLAST on NCBI transcript from alignment at scaffold_354:1107443..1114863+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061121 ID=TCONS_00061121|Name=TCONS_00061121|organism=Clytia hemisphaerica|type=transcript|length=7421bp|location=Sequence derived from alignment at scaffold_354:1107443..1114863+ (Clytia hemisphaerica)
GTCATCATTTAAAGACACGAGATAATTCAAGGTAAGTCTAAAGTTCGAAA
TAGACTTGTTTTTTTGGGGGACTTGTTTCTAATTTAGAATTTTCGCTACC
GAGTCTGCTTTTAACCTATTACAATAATGGagtctccttaattcgaataG
GATTTTTGGTTCCATCACCGTTCCATCATCAGTTACTTTACAAACACCTC
CGTaactaaaaattcaattttaactAAAAATCTCTCTAATAATACCTTTG
AATATCATAAAACTTTACTTTACTCTTTCAACCATGATCTTTCacctttt
ttatgagatttaaTACTTACTGTAATCCTTTAGAATTAACTTCACAGata
aaatcgtcaaaaaatagGGTGGAAAGGGTCGCAGCGATCTTTTGTCCATA
CCTACTGGTATAGGACCGAAAAAAATAAGAGATATCACTTAATGGGTTAA
GAGCTATTTTCTGAGAGATCTAGGCAAAGTGAGTAAGCGATGCCTTTAGA
TTtccttcatttttggatattttgttcCATATGACGAAAAAAGCTcctga
tattttttttgaacaaTTCATTTCCGTTGCTGAGATATGGCCTCTATTTA
CTTTATGTATAAAACGgctacacgtttcttttttataagaacatccaaaa
tttttgaagccttcggatgttcttaacctttagagttttaagcctaaaaa
tattcttaaaatcttcttatttttggcttttttggggtatttttgtccat
ttccctaagaaattaAGTGTTTTAGCGTCcaccaagccttaaaatgctct
taacttattgttcttaatattttggccagcgaagctagttttttcttatt
taaaaaaacgtgtagtgccCTATATTTATATCTACCTACAAAGAGGCCCC
CCAGcagaccctcaattcacgcaatcacgcaattatttttcgaaattcac
gcattcacgcaaattttcctcgagtttcacgcaataacccaatttcggga
aaaatcggggaaacattggaaaatcgggaacacTGCACACAATCAGtgga
aaaaaggggaaaattcacgtattcacacacaaaatagcccagattcacgc
attcactgGATTTTTACGTTCACGcatgttttttcaattcacgcattcac
gcattttttttttcaattttcacgcattcacgcaagcgaaaatgcccatt
cacgcattcacgcaaaccgctgggggggggcNTTAACttattgttcttaa
tattttggccagcgaagctagttttttcttatttaaaaaaaacgtgtagt
gccCTATATTTATATTTACCTACAAACTTGCGATTACGAAATCTAATTTT
CTAAATACACTCGCAATAGTGTATTTTACATTTTGAAGCAATTTCTTAAA
GAAGCTTTAAGGAGATGGGTTTGACCTTATCTCGGGAGGGGGTGGGCGAC
CAAACCTGCAGCCTAAAaataggcctttgaaatcggacccttgcagtgca
gagaaaattgaGCCAAATTGAGCCAaattgagtaaatttgggcgggaaat
ggacccttacagtgcattttcttgaaagtcTTTGACTACTCCAGGTCAAA
AATGgtcagtttttcaaattttacatcctttttcttttctttgctcattt
cgacccttagtGCACTTTGAAAAGCTTGGAAAAAgaacccttaagggccg
cacatacggtaggtcgtttaccaCGAGTGCCACCCTCCCCTGGGGACTTT
ATATAACCGAtggattttgttttttcttttagttgGACATTGATAAGCAA
AAATGCCAGCCATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAA
GAACGGAATATATCATACAGGAAATCAGCCATCTTTTGGGATCAGGTACA
CAAATATGCCAATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTCT
TATCTGTAATGGAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATCACT
GGAATTGCGACGATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGA
AAAACGAAATGAACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGT
TGAATTTAATTTCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCT
GAAATCCAAGATGCAATGTTGGATGAACCTTTTACGAGCTCtgttaaaaa
attgaagaaacagCGAGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAAT
CTACAGATTGTAAGATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTC
CAAAAGACAAACGcactgaaaaatcaaaagaaaaatcaaaagaaaacaga
tAGACTACAATTATGGGCTTTAAGTACTAATCTGAAAATGGAAGTTTACA
AGGATGAGCagaaatggttgaaatttaaaaaagaagaaggaatAAAGCGT
ACTTTTGATGATAGTGAAAGTGTAAATGATAGCTGTGAGAATAAAGTGCT
GAAAAACAGTGACGGTCGATCTATGGATCAGATTGATTCTGAAAGCACCA
CCAAATTATCGGAGGAAGAAATGGATTTGGCTGTAGACTTAGACAGACCA
TGTGCAGCACGTAGATCATTTGACCATACAGATGGTGGTAGCATTAAACC
AATGCAAATATCAACACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAA
TTCCCTTCTTGATGAATAATACAACGGATACGAATCATATCAAGCCTGAT
CACGATTTTATGGAAATTCGAGTGCAACCATCTGGTAAATCAAACATAGA
ATATAGCTCGAAGTGTTTAAATATACCACAGAATCCTGATGTAACTTTGG
TGCCACTTACTTCGGAGAAACACCTAATTGGCGACCATGAAGACCATAGT
CAATTATCTCGACAGAACGCGGTAATCAGTGATCATTTGAATAACAACGA
TAACGAAGAATCACTCAAAAACAACTGAAGtactattttttatttaattt
gcaTAGGTTGAAAATGTgctattccattttatatcgATACAGGAGGATGA
TCGATTATTTCCAGGGGTAATTCGAGAAAAATTTTGCCAGGGGGTCTAAG
GAAATCTTTGTTAACATTTTTCCAGGGTGTAAGAGGCTATTCTCAAAATT
CCAGTGGGTAAATGACTAATTTTCGTTCCGCGTCCACCTAAATtatgaag
aaaaagattttcaagggTTCTTcagcaaattttgccattttccagggggt
atcatTACATtgtacattttgaaaaactttttttggcttaaaatggcTCG
CCTatccccctgtatggaaattaaAAGGAACATCCCAATTAGAAAGAGGC
AACATGTTTTAATGCAATTTTATTTGGGAACTAAACAATACTTTGATATT
AAAGGACGTTTTTTGACGATTGTGCCAGCTGAAGTGTATGGAAGAAAACA
CAAAGGACCAAAGCTTTGATGAACAATTTATGCTCGTTAAGCTCAACAGC
TTTTACATGAACACATATTCATTTACGTAAACAGATAGAAAATTTTATTC
CTtctgaaaaaattttgttgacAAATAGTCTGTATGTAAAGGGCTAAgat
aaaattaatttaaaattatttttcagggTGTGTTTTTCACTCTTCTATTT
GACAATTAAACCTCTGTCTGAATgccctggtggaactttttATAGAATCT
ATTGTTTCTAGTACAAACACCCGCGCAACTCTTTCCAATCTATACCCATT
TTTTTCTATGTgcaatgaaagttgaaatttcagggtattctTTCCACCGG
GACCGATTTTTTGGCTATACTTTAATCAGTGGGGATGAAGGGATGAGAAT
CTACCagatctgtgacacaggggtgttgagaattttgttatttttcaacT
CCTTCAGGGCTATGGGGAAAATATAGGTTATTGAGGATTTTTTCAAAGCA
TGTGCTTAATTTTAAATGTAATTTTCTTTACTTTGGCTGAAGCAAAATAG
GTCATGTTTGTGTTCgttggaaaggtatttttaAGCTCTATCTTTTTAAT
GGTTCCACTTTCTTGAACTAGATTACCAATCAAAAATGAGGAGTTTTAAA
AACATGAGCTTAACTTGAACAATACAAGGGATAAAACTCAACAAATAACA
TCCCAAATAGAAACGTCGATGATGTTTGTACTGGGATCAAGAGTTTAAAG
AGATGGAGACTAATTAAACAAATACTTATATCCGCAGTGTCCATATAAAT
GATGGAATCGAGACATAATTCAATCTTTCTGGAAGGGGAGTTTAAAAACA
AGAGATAGTTCAAGGTAAGTCTAAAGTTCGAAAGAGACTTGTTTTTTTTA
GGACTAGTTTCTATTTTAGAATTTTCGCTACCGAGTCTGCTTTTAGTATA
TTACAATAATGGAGTCTCCTTACTTCGAATAAGATTTTTGGTTCTATCAT
CAGTTACTTTAAAAACagctccataactcgaaattcaACTTTAACTATAA
ATCTCTCTAATATAAGTTTGAATATCATAAaactttatttcttaggtttc
agcagtagcgtagacaggaggggtgcataataattatcttttcataatat
aaaaagataattactgtgtcataaaaatctactcCTACACAATTTTTGCG
TtcctcttgtctacgctactggttTTAGCTCTTTCAACCATGATCTTTTA
CCTTCTAAATGAGATTTAATACTTAATCCTTTAGAATTAACTCCACAGAT
AAATCGTCAAAAATAGGGCGGAAAAGATCGCGGCGATCTTTTGTACATGC
ATACTGGTATAGGACCGAAAAAAATGAGAGATCTCACTTAATGGGTTAAA
GACCCTAGCCAATATTTTTGAAGCCTATGTAATCTTTTCTAAAGAGATTC
CATCGTTATTTAGCGGCCAATATAGGTGAAAAGCGGTTTAAATAAGGACT
AGAGCGTAAATCTGACCAAGATTAACCTAGAGCTGGCGTAAAAAGGGTAC
GTTAAGCTAGGTGGAAATTTTAATCCCCTGCTTACTATTACTACTTTAGT
TTTTTTATGTCATGAAACTTATGCCATAGTCTAAGACAAGTTTTATCTAA
aaaggaacaaacgtgaagacgggagtTTTTTCGGGGTAGCTGTTGTCTTA
AAACACAGACTCTATTGTCCGCCacgcaacatattacgttttataatata
caaactatgttatatcataataatatattatctGGACGAAAAGCATCGTC
TAATGCGAGTGTGTTTACTCAAGTATTTACTTTGTTTATGTATAAGacgg
atacacgtttttttataagaacatccaaaagttttgaagccttcgtaTGT
TTTTAGCCTTTagagttttcagcctaaaaatattcttaaaatgttctaat
tttCGGCTTTTTTTGAGTACTTTTGTCCATTTactaagaaattaggtgtt
ttagTGTCcaccaagccttaaaatgttcttaacttgttcttaatatcttA
TTGGCCagtgaagccttatgttcttattaaaaaacgtgtagtgccCTATA
TTTACCTACAAACTTACGATTATGACTTCTAATTTTCTAAATACACTCGC
AATAGTGTATTTTacattttgtaatattttgttttgctttaaGGAGATGG
GTTTTACCTCATCCCGGGGAGAGGGCACTCGATTTAAAAACAACTGAGCG
TGCGGTCTAAAATTAGGCCTTTAATATCGGACCCTTGCActgcagagaaa
attttgccaaatttgagtGAGTTTGGGCGGGAAATGGACGCTTACGGTGC
ATCTTCTTGAAAGTCTTTGACTATTCAAGGGCAAAATATGatcagatttt
tcaaactttacacccttacagtgcaattttttttccttgctcatttcgac
ccttagaGCACTTTGAAAAGCTTGGAAAAAgaacccttaagggccgcaca
tACGGTAGATCGTTTACTGTACCATCCTTGGGGGACTTTATATAACCTAt
ggattttgttttttcttttagttgGACATTGATTAGTAAAAATGCCAGCC
ATTTCAAATAACTTACGAAACTACATAGAGCTGGTGGAAGAACGGAATAT
ATCATACAGGAAATCAGCCATCTTTTGGGACCAGGTACACAAATATGCCA
ATATCTCACTAATCATTTTGACCTCTGTTGCGACTGTATTATCTGTAATG
GAAAGTTCGATTCCAGTGTATGTTGTTCCGATAATCACTGGGATTGCGAC
GATGATTTCAAGCATGATCGGTGTCCTTAAACCATACGAAAAACGAAATG
AACAAATGGCTTCTTCAAGGAAATTTAAGAAACTGATGTTGAATTTAATT
TCAGCTGAAAGTATTGATGATTATAAGAAAGTGAGATCTGAAATCCAAGA
TGCAATGTTGGATGAACCTTTTACGAGCTCtgttaaaaaattgaagaaac
agCGAGCCGCCGAGAAAAAGGATGCAATTGGTTCGAAATCTACAGATTGT
AAGATACAGATCGGGGGCCAAGACGAAAACGAAGTTTTCCAAAAGACAAA
CGcactgaaaaatcaaaagaaaaatcaaaagaaaacagatAGACTACAAT
TATGGGCTTTAAGTACTAATCTGAAAATGGAAGTTTACAAGGATGAGCag
aaatggttgaaatttaaaaaagaagaaggaatAACGCGTACTTTTGATGA
TAGTGAAAGTGTAAATGATAGCTGTGAGGATAAAGTGCTGAAAAACAGTG
ACGGTCGAGCTATGGATCAGATTGATTCTGAAAGAACCACCAAATTATCG
GAGGAAGAAATGGATTGGGCTATAGACTTAGACAGACCATTTGAATCACG
TAGATCATTTGACCAAACAGATGGTGGTAGCATTAAACCAATGCCGAAGT
CAACACCAACAAAGCTTAAAGATGTGCCAGAGAAAGAAATTCCCTTCTTG
ATGAATAATACAACGGATACGAATCATATCAAGCCTGATCATGATTTTAT
CGCAATTCGAGTGCAACCATCTGGTAAATCAAACATAGAATCTAGCTCGA
AGTGTTTAAATATACCACAGAATCCCGATGTAACTTTGGTGCCACTTACT
TCGGAGAAACACCTAATTGGCGACCATGAAGACCATAGTCAATTATCTCG
ACAGAACGCGGTAATCAGTGATCATTTGAATAACAACGATAACGAAGAAT
CACTCAAAAACAACTGAAGgactattttttttaatttaatttgtaTAGGT
TCAAAATGTGCtatttatatccatacaggagGTTGGACAagcatttccag
agggtaaattcgaaaagaatttccagggggtctaaggaagtctttttttt
ttctttttttccagggtgtaaaaagttattccaaaaattccagtgggtaA
ATGACTAATTTTCGTTCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061121-exon-scaffold_354-1491911889:1107443..1107473 | TCONS_00061121-exon-scaffold_354-1491911889:1107443..1107473 | Clytia hemisphaerica | exon |
| TCONS_00061121-exon-scaffold_354-1510915933:1107443..1107473 | TCONS_00061121-exon-scaffold_354-1510915933:1107443..1107473 | Clytia hemisphaerica | exon |
| TCONS_00061121-exon-scaffold_354-1575043694:1107443..1107473 | TCONS_00061121-exon-scaffold_354-1575043694:1107443..1107473 | Clytia hemisphaerica | exon |
| TCONS_00061121-exon-scaffold_354-1491911889:1113464..1114863 | TCONS_00061121-exon-scaffold_354-1491911889:1113464..1114863 | Clytia hemisphaerica | exon |
| TCONS_00061121-exon-scaffold_354-1510915933:1113464..1114863 | TCONS_00061121-exon-scaffold_354-1510915933:1113464..1114863 | Clytia hemisphaerica | exon |
| TCONS_00061121-exon-scaffold_354-1575043694:1113464..1114863 | TCONS_00061121-exon-scaffold_354-1575043694:1113464..1114863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1107443..1114863 + |
Blast
The following BLAST results are available for this feature:
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