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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061119 ID=TCONS_00061119|Name=TCONS_00061119|organism=Clytia hemisphaerica|type=transcript|length=3887bpRun BLAST on NCBI protein sequence of TCONS_00061119-protein >TCONS_00061119-protein ID=TCONS_00061119-protein|Name=TCONS_00061119-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp LDFHEMWKYLLTFGILAAGIERLEGAKSKVLRIKPTNEEQIDVLLDLIDIRun BLAST on NCBI transcript from alignment at scaffold_354:1098588..1106513+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061119 ID=TCONS_00061119|Name=TCONS_00061119|organism=Clytia hemisphaerica|type=transcript|length=7926bp|location=Sequence derived from alignment at scaffold_354:1098588..1106513+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:1098588..1106513+ >TCONS_00061119 ID=TCONS_00061119|Name=TCONS_00061119|organism=Clytia hemisphaerica|type=CDS|length=9912bp|location=Sequence derived from alignment at scaffold_354:1098588..1106513+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061119 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3) HSP 1 Score: 293.893 bits (751), Expect = 4.582e-88 Identity = 161/404 (39.85%), Postives = 235/404 (58.17%), Query Frame = 3
Query: 24 KYLLTFGILAAGIERLEG-AKSKVLRIKPTNEEQIDVLLDLIDIYHL--DVWKSTQLPKPTFDILVKNAKVEKS---LHEEHIPYNVMVHDVDKLMENEQKS---NQKLAFSSGYDYSKYGTWDEILSEIKNLANIHSNKASLFNVGKTFEKRDQIGIKITNGDGNDKPVIWVDGGIHAREWISPASVIYLVKQLLT--SDSDTIKSALSKYDFHILPVFNIDGFVYTHKSKETRLWRKTRTK-SGYKCIGVDPNRNWGSHFGGKGTSDDPCSNIYHGKYAFSEISVQNVATYLANLPHLKAYWNVHAYSNLVLTPWSYTTELPKDYEEIKRVGDVYAKEVVKRYGTKYTVGPPGEILYPVGGGSIDWTYEALGVIYSYALELRDNGKYGFLLPTDQIIPCAEE 1199
+ +L FG L I LE +VL I P+NEEQI LL L HL D WKS P T + V V+ L + I Y++M+ DV L++ E + N++ S +++ Y T +EI E+ NL H S N+G +FE R +K + G DKP IW+D GIHAREW++ A+ ++ ++++ +I S L D +LPV N DG+V++ + R+WRKTR+K SG C+GVDPNRNW + FGG G S +PCS+ YHG A SE+ V+++ ++ + +KA+ +H+YS L++ P+ Y D++E+ V A+ + +GTKY VGP ++Y GGSIDW+Y+ G+ YS+A ELRD G+YGFLLP QI+P AEE
Sbjct: 4 RLILFFGALFGHIYCLETFVGDQVLEIVPSNEEQIKNLLQLEAQEHLQLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIAYSIMIEDVQVLLDKENEEMLFNRRRERSGNFNFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTG--GDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQT--KNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYD-YGIKYSFAFELRDTGRYGFLLPARQILPTAEE 402 The following BLAST results are available for this feature:
BLAST of TCONS_00061119 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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