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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061118 ID=TCONS_00061118|Name=TCONS_00061118|organism=Clytia hemisphaerica|type=transcript|length=569bp
ACCTAAAgcataaaattgcatttttaagaaagttttgaatcttaTCCAAG
GTGGTTATATTCTTAGCACATccttataaaatatattcttataaaagaaa
aagcgtgtattcaaaaaaattgatctaAAATTGTTTAATTCTCCCACGAT
CCTGGATAAATGCCACGGTTGTTCAAACTGAATGCGCGCTAAATATGGAA
TCAGATACTGCCATGGTGCGCCAACTGGTTAAGGCTGGGCCCACGGCaac
aacttttttatttaaaagtttttccccGGATATCGGCCTGACTGCCGTTA
GAAGACAGGAGACGGAGTTCATGGAGTAGATCAAGGAGGGAGACACAAAA
TATTCAAGTCTAATTTCAATCGATAACTCATTATACAATATCCAAACATA
CAGTTCCATAAAGCATAAATTCAATAAAGTTCAACACGTCGAGAAGACGG
AAACGCACGATTAACTCTGCCTGGCCAGTGCCATTTCCGAACGAACTCTT
TACTCCTCCTGGTACCTGGATCTCTTCTCTCATGTTGATACTCCCCGACG
GGAGGACTTGCCTCGCCCG Run BLAST on NCBI transcript from alignment at scaffold_354:1091766..1094918+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061118 ID=TCONS_00061118|Name=TCONS_00061118|organism=Clytia hemisphaerica|type=transcript|length=3153bp|location=Sequence derived from alignment at scaffold_354:1091766..1094918+ (Clytia hemisphaerica)
ACCTAAAgcataaaattgcatttttaagaaagttttgaatcttaTCCAAG
GTGGTTATATTCTTAGCACATccttataaaatatattcttataaaagaaa
aagcgtgtattcaaaaaaattgatctaAAATTGTTTAATTCTCCCACGAT
CCTGGATAAATGCCACGGTTGTTCAAACTGAATGCGCGCTAAATATGGAA
TCAGATACTGCCATGGTGCGCCAACTGGTTAAGGCTGGGCCCACGGCaac
aacttttttatttaaaagtttttccccGGATATCGGCCTGACTGCCGTTA
GAAGACAGGAGACGGAGTTCATGGAGTAGATCAAGCGAGATCAAGAAGGG
agacaaaacaaaatgttaaGTCTAATTTCAATCGATAACTCATTATACAA
TATCCAAACATACAGTTCCATAAATTCAATAAAGTTCAACACGTCGAGAA
GGCGGGAACGCACGATCGACTCTGCCTGGCGAGTGCCTGGTACCTGGATC
TCTTCTCTCATGTTGATACTCCCCGACGGGAGGACTTGTCAAGGTGAGCT
TCCATTCAATGGTTGGTATAACTACGAAAATGAATAATAAAATTGCGGAA
CTATGTCCTCATGACAACACTCCCTCGACAATGGAGATTGGTCCCCAATC
TGTagcgtttttatttttttgttctattttgGCATTGCTCGTAATGTTCT
TTTTGCGTACTCTGAACCAACAGTTAATTGCTAAATGGTTCTTGACAAAC
GTAACAGAGTTTTTCATTGTCCATGGTTTTGGACTGGTTTGCTTTATTTT
CGGACATTTCTCGATGTAAAGGGTTTTTTCGATTTCGACGATTTTCTCTT
TTCGATTGACAACTTCAGCTTTAGTCTTCTAACAGCCTTTTCGTACGAAT
CAATCTCGTTCAGGAATAAatcattttgagttttttcgTCTAAACCAGCC
ATAAAGAAATCTAACTTTTCATCTGGTTTAACATTCAGCTCGGTAAACAT
TTGTTCCATTTTCTCAACATATTCCTCTAACGTAGACTGACCCTGTTTGA
TAGAATAGGGGTcctttttcaaaagagattcaTTGTCAAACTCAGTAGTC
AGACTTTCAATGATTTTATCATACGTATTCTTTCGCTCGTTGCTTAGTCC
TCGGAAATACCATTTTGGTCTTCGTCTTAAACGGGTTGGTAGTAGAGTCA
GCTTCTAGTTGTCACTCAATTCAGCAACGGAAGACAGTTCATTAAAATCA
GCCAAGAAAGATCTAAAAGTCTTATCATACTCATCGAAAATCGGAAAGTC
ATCGTGGTCAACGTTTAGGTGATTCATATGATCTCAATACAAATCGTTTG
TACGATAAACATCAATGTGATTGGCTAATAAACAAAAAGAGGAGCAGTCG
TGGACGTTTTCAATAGTCACATCGTGTTTGATACAAGGTTGGTTATCTGA
AGAGCGGCTATCGGTTTAAAAATCGATTGAATCGATGTTGGATGCTGCTA
TAGACGTTTGGTCCCGCGTTTGGTTTCCACAAATAATGAAATCAGAGCAT
CAATAATTAAGTTGCTTGGGTTTGATTTAACCCGTGGTTTCTATACAACG
TTTGTTCATTATTGTTCATGATTCGGGGCGTGGCTGACGGTAATTTGACG
GGTTTTGGTTCGTCGACAGGTATCAATAAATCATTAGTTATACATATTGA
AAAGATAAATCAACAAAGTTCGAAATTTAATTGTCTCGTATGGATAAgca
atcaaattttaatttgatgaaAGGCTGCTCGTAAGCAGGTGCACAAGTTT
CAGTGAAAGGTGCATACATTTGAAGAGTTTGAAATCAGCTacagtttgtt
ttcaattcacaaagattgtttgttattgttataATTTATGTCCATCGTAC
CGTCGATAGTGCGACGACTAACTAGACGGGGAAATAATTGTCGTAGTTTT
TCAAAGTAGGTAATGTGGATTAATGCCTCAGCTGCCACTTGCCCAATGTC
TGAACGTCCCGAGAGGATAATTGATTCGATAAATACGGTCGAAATAGTCG
GTTTCTCGTCGTACATCGCTGCCAGACGTTCATTTTAGATTCTTCAGGCG
ATAATTTGAACTTCTAGGTTTGTCTGAGCTTGGAATTGTgcaaaaaggta
aacacaacTAGGCAAGCTAGGACAAAATGCGGAGTTTGTATATCGCTGAA
GAAACTTGTAAGTAAACTTGAGGTATGgaactacaatcagtgacaaaata
cttggcacaaaagggaaattcaccggggtgttttgaaaccacaatcgatt
tgtaagtgctcaaAAGTAGgctcgaagggtagagttttaactatgagttt
taacgctagacttaaaaccttaggatctgaggattcaaaagttcaaaaat
gatccagtagggcttgaaatatagcctagaaactaATAaaccctcccaga
tcgaaataatctatgaaatcaagttaaaggcctaaaaattgacattagcc
aaaagtgccaatatattatggcactgattgtatgTCAAACTTTTCTAACA
AGAACCACACCCACCATAACGATTAAACAATTCTCCAACAATACAGAAAG
TGTTTCATATTCTATTCAAGTATTCAGCATTCAAACAATTCGGTTCGATT
TCCAGCTGTTGTATGTTGTAAATGTTGAAATTGTcgttgtatttttttaa
aagttcggtttttgaatttttccattttttcataGTACCTCTCCCTTATA
ATCTCCATCAGGGTCATCCTCTAAAGCTGAGTCCCCAGATGTCAAGGTGC
GCCAGCGCCGCCAGCCGGTTACTAAGGCTGGGCCCAGGACAacaacattt
ttatttaaaagtttttccccAGATATTAGCCTGACTGCCGTTAGAAGACA
GGACATGGAGTAGATCAAGGAGGGAGACACAAAATATTCAAGTCTAATTT
CAATCGATAACTCATTATACAATATCCAAACATACAGTTCCATAAAGCAT
AAATTCAATAAAGTTCAACACGTCGAGAAGACGGAAACGCACGATTAACT
CTGCCTGGCCAGTGCCATTTCCGAACGAACTCTTTACTCCTCCTGGTACC
TGGATCTCTTCTCTCATGTTGATACTCCCCGACGGGAGGACTTGCCTCGC
CCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061118-exon-scaffold_354-1491911889:1091766..1092085 | TCONS_00061118-exon-scaffold_354-1491911889:1091766..1092085 | Clytia hemisphaerica | exon |
| TCONS_00061118-exon-scaffold_354-1510915933:1091766..1092085 | TCONS_00061118-exon-scaffold_354-1510915933:1091766..1092085 | Clytia hemisphaerica | exon |
| TCONS_00061118-exon-scaffold_354-1575043694:1091766..1092085 | TCONS_00061118-exon-scaffold_354-1575043694:1091766..1092085 | Clytia hemisphaerica | exon |
| TCONS_00061118-exon-scaffold_354-1491911889:1094670..1094918 | TCONS_00061118-exon-scaffold_354-1491911889:1094670..1094918 | Clytia hemisphaerica | exon |
| TCONS_00061118-exon-scaffold_354-1510915933:1094670..1094918 | TCONS_00061118-exon-scaffold_354-1510915933:1094670..1094918 | Clytia hemisphaerica | exon |
| TCONS_00061118-exon-scaffold_354-1575043694:1094670..1094918 | TCONS_00061118-exon-scaffold_354-1575043694:1094670..1094918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1091766..1094918 + |
Blast
The following BLAST results are available for this feature:
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