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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061116 ID=TCONS_00061116|Name=TCONS_00061116|organism=Clytia hemisphaerica|type=transcript|length=1808bp
gttttaaaaatcttttcttgttttcttgattAAATATACAGATTTGTTGA
TGAATTTTCAAGTTATAGGTGAAAGACAATACAAATCGATGGAAATGACT
TGATGGTAGTTCTGTCTGTTGAGTTTCTTGAAGCCACGAATACACCAATA
GAACACCGGCCGAAACACCAGCAACAACATTTCATGGATACAAGTCAAAA
GATTGCTGGCATCACTTTACTAATTTTTATCATCTTCGTCAGCTTGGGAA
TCGCTCAGTGTTTCTTTATCAATGTTCATTCTTGTTTCCACATCAATGGC
GCATGTCCGGGAGTTTGGGCTCCATTTGTTTACATCTCTCTACCCTATTT
GATGATTCGTGGATACGAAAGAAACTCTTTGGCAAAGCATGGAATGATTG
GTGTATTTGTTTGTTTTCCAATATCAATAATCACATTTGTGTTTAGTGCA
GCAGACGCGATTTGCACCGAAAAAAACACCGATCCACTTGCCCGAATATT
GTCCCAAACTGTTGCTGTTATAAACAGTATATTTGCCGTACCCTTATTCT
TTGCGTTTGTTGGTATTATTGGTTACTTACTGTTTTCTTTAGCACCAGCT
AAATGTTGTTTGCAGTATGATGGTGAATCGGAGaatcaaaaattgaataa
tGGAGGAGTTTTGTTGTACCAACGATATGATGGGTTTGATATTGGAGAAG
ATGGAATGGCAGTGGAAGTCTGACCGGAAATAAAAGTATATTAGTGGGCG
TACCCACAGTGGTTGTAAAAGAGTGTTCGCAGTCACCCCACTACCTCAAA
TATGAGCTAAAAGGATATCCAAAATAAATATGTTAAAGTAATTTTCATAA
TATAGATTTTACAGAAGGAACAGCTGATGAGTTATTAACTGCAAGACAAG
AATTCTCGTCTTGTTTTCAGACACTATTTCAAAAGAATACCGGAAAGATC
GTACCATGTTCACcagtaaagaaagaaaatgtaaCTGACTCAAAATTGGA
AAAGACGTAAAAAGCTTTCAATGtcgaaatcttttgaaaattggttGGAA
AGATTTTGTTAAGTGAATCTGTATCTGTGGTAATAAAACGTATAGATAAT
GATAATTATCAAATGTTAAATGTAAAGAGACAAGCCTGATCTGACGGAGT
TTCACTGAGTTTACTAGTTtggaaaatggtgaaaaatcaAGCTCATGTTA
AGAGGTTTTATATGGCGAATTTGATTATTACCACTTAGTGTGAAAAGTAG
ATTAACAAACAAAATAGTTTAAAAATCGTTATTTTATAATTCTAGAATTC
AAAAAGTATTCACGAACAGTTTTATTTTCTACTGATCtactagactatgt
tatagtctaagacgaatcactatctaagaaaaaagcccaaagccgaagaa
aattcgcaaacgggtttttttgccgaaaagagtttacaagtcggtagagt
tgctagTTGCTAGTCTtagtttcttcgaaactctcccgccgatttttttc
cgtataccgccataacgccataccgccatttttcccgccttttcTACCac
cactgtaacggacgataacatcgtctactgATCTACCTACCCCTGTTCCC
GTTGGaagatttcatttcaaatttacaCTTGGATGAAAACCAAACATTTA
AAAATCTCACACATCTAGCCCAAGGAGGTAAAGGCTGAAGCTTAGCAACT
TTTCGAATCAAAGGAAAAAGTTGCAGCTTATCAAGAAACTTTACTTAATT
TACTATGACATGAACTTTTTTTGAATATGAACCTTGCTGATTTTATTCCT
GTATTCAG Run BLAST on NCBI protein sequence of TCONS_00061116-protein >TCONS_00061116-protein ID=TCONS_00061116-protein|Name=TCONS_00061116-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MVVLSVEFLEATNTPIEHRPKHQQQHFMDTSQKIAGITLLIFIIFVSLGI
AQCFFINVHSCFHINGACPGVWAPFVYISLPYLMIRGYERNSLAKHGMIG
VFVCFPISIITFVFSAADAICTEKNTDPLARILSQTVAVINSIFAVPLFF
AFVGIIGYLLFSLAPAKCCLQYDGESENQKLNNGGVLLYQRYDGFDIGED
GMAVEV Run BLAST on NCBI transcript from alignment at scaffold_354:1084849..1087754+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061116 ID=TCONS_00061116|Name=TCONS_00061116|organism=Clytia hemisphaerica|type=transcript|length=2906bp|location=Sequence derived from alignment at scaffold_354:1084849..1087754+ (Clytia hemisphaerica)
gttttaaaaatcttttcttgttttcttgattAAATATACAGATTTGTTGA
TGAATTTTCAAGTTATAGGTGAAAGACAATACAAATCGATGGAAATGACT
TGATGGTAGTTCTGTCTGTTGAGTTTCTTGAAGGTAAGTAAGAGTAGTTG
TGTATTGAATAAATTATCATGCGTTATAACAACTTTATACGGATAATGTA
TTATTCCGTTACAGTTTGCTTAAATACTTAAATAACGGGATCTTATCTAC
GACGAAGGCTATAAGGTGTATTATACGTCAGATTGCATTAGAAAATacaa
ttgacgctctctaatctGATTTCAAAAGGGGATTCGAATTTTCATCGagt
aagggagcctatcgaatagtagggcgtcgtttataattttttttgatttg
aacaaCCAACGaaaatatgttttattatataagggtatatacctagaggc
aaaaataaaatataagaatTATGTAAATAGTCGAGCCCTTCAcatagttt
tttttaatgattttcttaattactttgagtcatcaaatttgttcatgaaa
tcgatataattgatattttaaaagttatcttccattaaaaaactaaaaag
tacaGCACCCGAGTTCCGTGCTTACGCACTAATATGTACAGTTAATGATT
CATTAACTgcaattaattaattaattaattaattaattaattcatTACTG
TAATATGATTAGTGCGTAAGCACGGTATAAGTATGTAGTAATAGGAGCGT
ATCGaaaagtagaacgtcgaattaaagATTGTTAACTGTAGTTAGCAGAT
CGCGTAGAAGACCTCCAAAAAGATGGTAAGACCAAATGAAGGTTGATACT
GGTTCTGCACTGGTTCAACTAGAAAAAGTTGCCATGGACCGTCATGCTTA
GAAAGCCCTGGTCATTAGGAGCAAGGGGCCTGAGGTCTGAGCATCTAAGC
AAGTAAGCAAGTAAGCAACTGTAGTAACTTCATTAAACTTTATTTTTACA
GCCACGAATACACCAATAGAACACCGGCCGAAACACCAGCAACAACATTT
CATGGATACAAGTCAAAAGATTGCTGGCATCACTTTACTAATTTTTATCA
TCTTCGTCAGCTTGGGAATCGCTCAGTGTTTCTTTATCAATGTTCATTCT
TGTTTCCACATCAATGGCGCATGTCCGGGAGTTTGGGCTCCATTTGTTTA
CATCTCTCTACCCTATTTGATGATTCGTGGATACGAAAGAAACTCTTTGG
CAAAGCATGGAATGGTACGTAATTCATTTTCATCCCCACCACAAATTCCA
TTAGTCAGGCGATTTTGCATTTTgcaattttacaaaaaagatgaatcaAT
GAATCGATAAGTCTTTTTTCTTGCTCTTTAGGCCAATTTTTCAaccttaa
aaaattatttttgtggCGGAAAGGAATAATTTATGTAGGTTATTTTGTAG
CAATTCCTTATCTTTATTCTTGCTCATATTTATCCTTTTTATAGATTGGT
GTATTTGTTTGTTTTCCAATATCAATAATCACATTTGTGTTTAGTGCAGC
AGACGCGATTTGCACCGAAAAAAACACCGATCCACTTGCCCGAATATTGT
CCCAAACTGTTGCTGTTATAAACAGTATATTTGCCGTACCCTTATTCTTT
GCGTTTGTTGGTATTATTGGTTACTTACTGTTTTCTTTAGCACCAGCTAA
ATGTTGTTTGCAGTATGATGGTGAATCGGAGaatcaaaaattgaataatG
GAGGAGTTTTGTTGTACCAACGATATGATGGGTTTGATATTGGAGAAGAT
GGAATGGCAGTGGAAGTCTGACCGGAAATAAAAGTATATTAGTGGGCGTA
CCCACAGTGGTTGTAAAAGAGTGTTCGCAGTCACCCCACTACCTCAAATA
TGAGCTAAAAGGATATCCAAAATAAATATGTTAAAGTAATTTTCATAATA
TAGATTTTACAGAAGGAACAGCTGATGAGTTATTAACTGCAAGACAAGAA
TTCTCGTCTTGTTTTCAGACACTATTTCAAAAGAATACCGGAAAGATCGT
ACCATGTTCACcagtaaagaaagaaaatgtaaCTGACTCAAAATTGGAAA
AGACGTAAAAAGCTTTCAATGtcgaaatcttttgaaaattggttGGAAAG
ATTTTGTTAAGTGAATCTGTATCTGTGGTAATAAAACGTATAGATAATGA
TAATTATCAAATGTTAAATGTAAAGAGACAAGCCTGATCTGACGGAGTTT
CACTGAGTTTACTAGTTtggaaaatggtgaaaaatcaAGCTCATGTTAAG
AGGTTTTATATGGCGAATTTGATTATTACCACTTAGTGTGAAAAGTAGAT
TAACAAACAAAATAGTTTAAAAATCGTTATTTTATAATTCTAGAATTCAA
AAAGTATTCACGAACAGTTTTATTTTCTACTGATCtactagactatgtta
tagtctaagacgaatcactatctaagaaaaaagcccaaagccgaagaaaa
ttcgcaaacgggtttttttgccgaaaagagtttacaagtcggtagagttg
ctagTTGCTAGTCTtagtttcttcgaaactctcccgccgatttttttccg
tataccgccataacgccataccgccatttttcccgccttttcTACCacca
ctgtaacggacgataacatcgtctactgATCTACCTACCCCTGTTCCCGT
TGGaagatttcatttcaaatttacaCTTGGATGAAAACCAAACATTTAAA
AATCTCACACATCTAGCCCAAGGAGGTAAAGGCTGAAGCTTAGCAACTTT
TCGAATCAAAGGAAAAAGTTGCAGCTTATCAAGAAACTTTACTTAATTTA
CTATGACATGAACTTTTTTTGAATATGAACCTTGCTGATTTTATTCCTGT
ATTCAG Coding sequence (CDS) from alignment at scaffold_354:1084849..1087754+ >TCONS_00061116 ID=TCONS_00061116|Name=TCONS_00061116|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at scaffold_354:1084849..1087754+ (Clytia hemisphaerica)
ATGGTAGTTCTGTCTGTTGAGTTTCTTGAAGCCACGAATACACCAATAGA
ACACCGGCCGAAACACCAGCAACAACATTTCATGGATACAAGTCAAAAGA
TTGCTGGCATCACTTTACTAATTTTTATCATCTTCGTCAGCTTGGGAATC
GCTCAGTGTTTCTTTATCAATGTTCATTCTTGTTTCCACATCAATGGCGC
ATGTCCGGGAGTTTGGGCTCCATTTGTTTACATCTCTCTACCCTATTTGA
TGATTCGTGGATACGAAAGAAACTCTTTGGCAAAGCATGGAATGATTGGT
GTATTTGTTTGTTTTCCAATATCAATAATCACATTTGTGTTTAGTGCAGC
AGACGCGATTTGCACCGAAAAAAACACCGATCCACTTGCCCGAATATTGT
CCCAAACTGTTGCTGTTATAAACAGTATATTTGCCGTACCCTTATTCTTT
GCGTTTGTTGGTATTATTGGTTACTTACTGTTTTCTTTAGCACCAGCTAA
ATGTTGTTTGCAGTATGATGGTGAATCGGAGaatcaaaaattgaataatG
GAGGAGTTTTGTTGTACCAACGATATGATGGGTTTGATATTGGAGAAGAT
GGAATGGCAGTGGAAGTCTGAATGGTAGTTCTGTCTGTTGAGTTTCTTGA
AGCCACGAATACACCAATAGAACACCGGCCGAAACACCAGCAACAACATT
TCATGGATACAAGTCAAAAGATTGCTGGCATCACTTTACTAATTTTTATC
ATCTTCGTCAGCTTGGGAATCGCTCAGTGTTTCTTTATCAATGTTCATTC
TTGTTTCCACATCAATGGCGCATGTCCGGGAGTTTGGGCTCCATTTGTTT
ACATCTCTCTACCCTATTTGATGATTCGTGGATACGAAAGAAACTCTTTG
GCAAAGCATGGAATGATTGGTGTATTTGTTTGTTTTCCAATATCAATAAT
CACATTTGTGTTTAGTGCAGCAGACGCGATTTGCACCGAAAAAAACACCG
ATCCACTTGCCCGAATATTGTCCCAAACTGTTGCTGTTATAAACAGTATA
TTTGCCGTACCCTTATTCTTTGCGTTTGTTGGTATTATTGGTTACTTACT
GTTTTCTTTAGCACCAGCTAAATGTTGTTTGCAGTATGATGGTGAATCGG
AGaatcaaaaattgaataatGGAGGAGTTTTGTTGTACCAACGATATGAT
GGGTTTGATATTGGAGAAGATGGAATGGCAGTGGAAGTCTGAATGGTAGT
TCTGTCTGTTGAGTTTCTTGAAGCCACGAATACACCAATAGAACACCGGC
CGAAACACCAGCAACAACATTTCATGGATACAAGTCAAAAGATTGCTGGC
ATCACTTTACTAATTTTTATCATCTTCGTCAGCTTGGGAATCGCTCAGTG
TTTCTTTATCAATGTTCATTCTTGTTTCCACATCAATGGCGCATGTCCGG
GAGTTTGGGCTCCATTTGTTTACATCTCTCTACCCTATTTGATGATTCGT
GGATACGAAAGAAACTCTTTGGCAAAGCATGGAATGATTGGTGTATTTGT
TTGTTTTCCAATATCAATAATCACATTTGTGTTTAGTGCAGCAGACGCGA
TTTGCACCGAAAAAAACACCGATCCACTTGCCCGAATATTGTCCCAAACT
GTTGCTGTTATAAACAGTATATTTGCCGTACCCTTATTCTTTGCGTTTGT
TGGTATTATTGGTTACTTACTGTTTTCTTTAGCACCAGCTAAATGTTGTT
TGCAGTATGATGGTGAATCGGAGaatcaaaaattgaataatGGAGGAGTT
TTGTTGTACCAACGATATGATGGGTTTGATATTGGAGAAGATGGAATGGC
AGTGGAAGTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061116-exon-scaffold_354-1491911889:1084849..1084981 | TCONS_00061116-exon-scaffold_354-1491911889:1084849..1084981 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1510915933:1084849..1084981 | TCONS_00061116-exon-scaffold_354-1510915933:1084849..1084981 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1575043694:1084849..1084981 | TCONS_00061116-exon-scaffold_354-1575043694:1084849..1084981 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1491911889:1085850..1086112 | TCONS_00061116-exon-scaffold_354-1491911889:1085850..1086112 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1510915933:1085850..1086112 | TCONS_00061116-exon-scaffold_354-1510915933:1085850..1086112 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1575043694:1085850..1086112 | TCONS_00061116-exon-scaffold_354-1575043694:1085850..1086112 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1491911889:1086343..1087754 | TCONS_00061116-exon-scaffold_354-1491911889:1086343..1087754 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1510915933:1086343..1087754 | TCONS_00061116-exon-scaffold_354-1510915933:1086343..1087754 | Clytia hemisphaerica | exon |
| TCONS_00061116-exon-scaffold_354-1575043694:1086343..1087754 | TCONS_00061116-exon-scaffold_354-1575043694:1086343..1087754 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1084849..1087754 + |
Blast
The following BLAST results are available for this feature:
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