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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061113 ID=TCONS_00061113|Name=TCONS_00061113|organism=Clytia hemisphaerica|type=transcript|length=813bp
CGTTTTTTTGGGCAATAGGGCCATGCGTCACAAGGGGAAGATCAAGTCCA
ATTTCGTGCCAAAGGAGAAAATAATGGATAGAGCATACAACTCGAAAGAA
GCGCTATTCGATGAGCTAAATTATCTACGCAACACTCAAAGCATCGCGGT
GACCAGTTTAGAGAAAAAGCAACACGTGGTACGCTCTATGCAAAAACAAC
AcgccaaaaagaaagaaaaagaacgaCTCAAAGGAAACCGCCTGAAATTT
GACAACTGGTGCCTGTCCGCTTACGAGCGACAACATCTTGAGCTGTATCA
GAAATACAAAAAGGAGCAACAAGAGTTGAAAGAGCAGGAGAGAAGTATCA
GAGCACGTGATTTTCAAATGGTCATCGATAATTATTGGGTGCGACGTCTT
GAGCTTGAGGAATCGCAATGGCCCGAAAAGAGCCGAGAGAAAGAAGAACA
GATTCGAATACTGGAAGCCGAGGTCGTCAGATACGATCAGGAGATTGAGA
AGAATGTAGAATTGATCGAGAGAGCGTTTCGACCAAGAACTACTTTGAAC
GTGATTTTGAAACGTATTAAACGTCTCTTTGTATGCGGTGGATGCAAGGT
GGCCCCGATGTAAAGCGATTGCGCAGAGATGGAGTTAAGTGGGAACCTGG
GAACGACGTTCAGCAAAATACTGGTGGGAAAAGAACAACGAAAGGGCGAT
ATCTATTCACATAGAGGGCTTCGTATCAGCCATTGGAAGATCGCTCAGGC
AAGGCTAGTTTTTTCTTTGATTCGGAGAACAGTAATGACGAACGGTGGCA
CACTGCTTGTTCC Run BLAST on NCBI protein sequence of TCONS_00061113-protein >TCONS_00061113-protein ID=TCONS_00061113-protein|Name=TCONS_00061113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
VFLGNRAMRHKGKIKSNFVPKEKIMDRAYNSKEALFDELNYLRNTQSIAV
TSLEKKQHVVRSMQKQHAKKKEKERLKGNRLKFDNWCLSAYERQHLELYQ
KYKKEQQELKEQERSIRARDFQMVIDNYWVRRLELEESQWPEKSREKEEQ
IRILEAEVVRYDQEIEKNVELIERAFRPRTTLNVILKRIKRLFVCGGCKV
APM Run BLAST on NCBI transcript from alignment at scaffold_354:1044502..1045713+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061113 ID=TCONS_00061113|Name=TCONS_00061113|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at scaffold_354:1044502..1045713+ (Clytia hemisphaerica)
CGTTTTTTTGGGCAATAGGGCCATGCGTCACAAGGGGAAGATCAAGTCCA
ATTTCGTGCCAAAGGAGAAAATAATGGATAGAGCATACAACTCGAAAGAA
GCGCTATTCGATGTAAGTCTAGAAAAgtctttattttgataaattgaaTG
TAGGTCCAAGAGTAAAACATAATTAGGCTGTGTGTGGTTATTAAACCTTG
TTGGTGCACAGGCGACTTGACAAGTAAAGGGAATTGGGTAgccagtccaa
ggtgctgactgGGCGCTCATTGAGCGCGTCCATTGTTGCGAGAATGGGCT
TCAGGGCCTTTTGCAACTCAACAAAATAGAAATTATGGTAATATTCATAC
TTCACTTGAGGTAGAGCCTGTACAACACAAACTGGTCTACTAAGCGTAAC
TATGTTGGACACAGTTTGACCCCCTGAAAGAAAGTGAATTTCTTGTCGGT
CTCTATGAACCAACCATCTAGCACCTCAATaattaattgtttgaatttTC
TACACACGCAGGAGCTAAATTATCTACGCAACACTCAAAGCATCGCGGTG
ACCAGTTTAGAGAAAAAGCAACACGTGGTACGCTCTATGCAAAAACAACA
cgccaaaaagaaagaaaaagaacgaCTCAAAGGAAACCGCCTGAAATTTG
ACAACTGGTGCCTGTCCGCTTACGAGCGACAACATCTTGAGCTGTATCAG
AAATACAAAAAGGAGCAACAAGAGTTGAAAGAGCAGGAGAGAAGTATCAG
AGCACGTGATTTTCAAATGGTCATCGATAATTATTGGGTGCGACGTCTTG
AGCTTGAGGAATCGCAATGGCCCGAAAAGAGCCGAGAGAAAGAAGAACAG
ATTCGAATACTGGAAGCCGAGGTCGTCAGATACGATCAGGAGATTGAGAA
GAATGTAGAATTGATCGAGAGAGCGTTTCGACCAAGAACTACTTTGAACG
TGATTTTGAAACGTATTAAACGTCTCTTTGTATGCGGTGGATGCAAGGTG
GCCCCGATGTAAAGCGATTGCGCAGAGATGGAGTTAAGTGGGAACCTGGG
AACGACGTTCAGCAAAATACTGGTGGGAAAAGAACAACGAAAGGGCGATA
TCTATTCACATAGAGGGCTTCGTATCAGCCATTGGAAGATCGCTCAGGCA
AGGCTAGTTTTTTCTTTGATTCGGAGAACAGTAATGACGAACGGTGGCAC
ACTGCTTGTTCC Coding sequence (CDS) from alignment at scaffold_354:1044502..1045713+ >TCONS_00061113 ID=TCONS_00061113|Name=TCONS_00061113|organism=Clytia hemisphaerica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_354:1044502..1045713+ (Clytia hemisphaerica)
GTTTTTTTGGGCAATAGGGCCATGCGTCACAAGGGGAAGATCAAGTCCAA
TTTCGTGCCAAAGGAGAAAATAATGGATAGAGCATACAACTCGAAAGAAG
CGCTATTCGATGAGCTAAATTATCTACGCAACACTCAAAGCATCGCGGTG
ACCAGTTTAGAGAAAAAGCAACACGTGGTACGCTCTATGCAAAAACAACA
cgccaaaaagaaagaaaaagaacgaCTCAAAGGAAACCGCCTGAAATTTG
ACAACTGGTGCCTGTCCGCTTACGAGCGACAACATCTTGAGCTGTATCAG
AAATACAAAAAGGAGCAACAAGAGTTGAAAGAGCAGGAGAGAAGTATCAG
AGCACGTGATTTTCAAATGGTCATCGATAATTATTGGGTGCGACGTCTTG
AGCTTGAGGAATCGCAATGGCCCGAAAAGAGCCGAGAGAAAGAAGAACAG
ATTCGAATACTGGAAGCCGAGGTCGTCAGATACGATCAGGAGATTGAGAA
GAATGTAGAATTGATCGAGAGAGCGTTTCGACCAAGAACTACTTTGAACG
TGATTTTGAAACGTATTAAACGTCTCTTTGTATGCGGTGGATGCAAGGTG
GCCCCGATGTAAGTTTTTTTGGGCAATAGGGCCATGCGTCACAAGGGGAA
GATCAAGTCCAATTTCGTGCCAAAGGAGAAAATAATGGATAGAGCATACA
ACTCGAAAGAAGCGCTATTCGATGAGCTAAATTATCTACGCAACACTCAA
AGCATCGCGGTGACCAGTTTAGAGAAAAAGCAACACGTGGTACGCTCTAT
GCAAAAACAACAcgccaaaaagaaagaaaaagaacgaCTCAAAGGAAACC
GCCTGAAATTTGACAACTGGTGCCTGTCCGCTTACGAGCGACAACATCTT
GAGCTGTATCAGAAATACAAAAAGGAGCAACAAGAGTTGAAAGAGCAGGA
GAGAAGTATCAGAGCACGTGATTTTCAAATGGTCATCGATAATTATTGGG
TGCGACGTCTTGAGCTTGAGGAATCGCAATGGCCCGAAAAGAGCCGAGAG
AAAGAAGAACAGATTCGAATACTGGAAGCCGAGGTCGTCAGATACGATCA
GGAGATTGAGAAGAATGTAGAATTGATCGAGAGAGCGTTTCGACCAAGAA
CTACTTTGAACGTGATTTTGAAACGTATTAAACGTCTCTTTGTATGCGGT
GGATGCAAGGTGGCCCCGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061113-exon-scaffold_354-1491911889:1044502..1044613 | TCONS_00061113-exon-scaffold_354-1491911889:1044502..1044613 | Clytia hemisphaerica | exon |
| TCONS_00061113-exon-scaffold_354-1510915933:1044502..1044613 | TCONS_00061113-exon-scaffold_354-1510915933:1044502..1044613 | Clytia hemisphaerica | exon |
| TCONS_00061113-exon-scaffold_354-1575043694:1044502..1044613 | TCONS_00061113-exon-scaffold_354-1575043694:1044502..1044613 | Clytia hemisphaerica | exon |
| TCONS_00061113-exon-scaffold_354-1491911889:1045013..1045713 | TCONS_00061113-exon-scaffold_354-1491911889:1045013..1045713 | Clytia hemisphaerica | exon |
| TCONS_00061113-exon-scaffold_354-1510915933:1045013..1045713 | TCONS_00061113-exon-scaffold_354-1510915933:1045013..1045713 | Clytia hemisphaerica | exon |
| TCONS_00061113-exon-scaffold_354-1575043694:1045013..1045713 | TCONS_00061113-exon-scaffold_354-1575043694:1045013..1045713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:1044502..1045713 + |
Blast
The following BLAST results are available for this feature:
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