TCONS_00061112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061112
Unique NameTCONS_00061112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061112 ID=TCONS_00061112|Name=TCONS_00061112|organism=Clytia hemisphaerica|type=transcript|length=293bp
CGGTCCTCTAAAGACAGTGTGGAACTACGGCCCTGTTTGAACGGCCCACA
AAGTCATCTTTTAGCCTTCCAGAATCcttattatgacgtcatagcaGCCA
TGGGGCTTGATGATGATATCGAGGAAGATTATTATAACCCACTTTATGAG
GTGCCGAGTGATTCAGAGACAGATCCAGATGATATGTATTTCACTTATCG
CACAAACCGACGTCATTTTCATCCACGAAATCAATTCCCATACGATAAAG
ACAGTGGTTTCTCTAGTGGCACTCTAATGTGATGTTGATCTGA
Run BLAST on NCBI

transcript from alignment at scaffold_354:1038804..1039387+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061112 ID=TCONS_00061112|Name=TCONS_00061112|organism=Clytia hemisphaerica|type=transcript|length=584bp|location=Sequence derived from alignment at scaffold_354:1038804..1039387+ (Clytia hemisphaerica)
CGGTCCTCTAAAGACAGTGTGGAACTACGGCCCTGTTTGAACGGCCCACA
AAGTCATCTTTTAGCCTTCCAGAATCcttattatgacgtcatagcaGCCA
TGGGGCTTGATGATGATATCGAGGAAGATTATTATAACCCACTTTATGAG
GTAAATATCTTATTCGTCAGTAAGTTATTCGTCGGTAGAAAGTGTCTTTT
TTGGAACTTAAcgaagcaaaatttctttgccgATGAATTTTCATCAGCCA
TAAGGCAAATGATTTGACTATAGTACAATGTTTGACTAGTATaatttgga
aaacgggaaactCGTTGCTATTTTCTACGGCGATTTTTTGGGGCGGCATT
TATTAAAAAGATGTTTTATTTAGATTCTGGAGGGATGGTTTATCTGAGGA
AATGGagaatttatttcatttttatttacaaattttcacaGGTGCCGAGT
GATTCAGAGACAGATCCAGATGATATGTATTTCACTTATCGCACAAACCG
ACGTCATTTTCATCCACGAAATCAATTCCCATACGATAAAGACAGTGGTT
TCTCTAGTGGCACTCTAATGTGATGTTGATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038343XLOC_038343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061112-exon-scaffold_354-1491911889:1038804..1038953TCONS_00061112-exon-scaffold_354-1491911889:1038804..1038953Clytia hemisphaericaexon
TCONS_00061112-exon-scaffold_354-1510915933:1038804..1038953TCONS_00061112-exon-scaffold_354-1510915933:1038804..1038953Clytia hemisphaericaexon
TCONS_00061112-exon-scaffold_354-1575043694:1038804..1038953TCONS_00061112-exon-scaffold_354-1575043694:1038804..1038953Clytia hemisphaericaexon
TCONS_00061112-exon-scaffold_354-1491911889:1039245..1039387TCONS_00061112-exon-scaffold_354-1491911889:1039245..1039387Clytia hemisphaericaexon
TCONS_00061112-exon-scaffold_354-1510915933:1039245..1039387TCONS_00061112-exon-scaffold_354-1510915933:1039245..1039387Clytia hemisphaericaexon
TCONS_00061112-exon-scaffold_354-1575043694:1039245..1039387TCONS_00061112-exon-scaffold_354-1575043694:1039245..1039387Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:1038804..1039387 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.212	9.85543	10.4895	7.92999	5.67882	1.79499	4.87256	4.56163	7.45198	3.95592	7.67943	5.60906	17.644	16.8692	10.282	14.8833	22.1285	26.2451	54.6124	59.0217	30.1289	26.2142	20.2788	27.6546	35.7175	23.4034	43.3063	36.3579	1.86957	3.33339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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