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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061110 ID=TCONS_00061110|Name=TCONS_00061110|organism=Clytia hemisphaerica|type=transcript|length=4952bpRun BLAST on NCBI protein sequence of TCONS_00061110-protein >TCONS_00061110-protein ID=TCONS_00061110-protein|Name=TCONS_00061110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1600bp MPSPYGGDNRGRVIFIGEGWGGNTHSQSSTLSNVNVVVEVWYDGPTPSFERun BLAST on NCBI transcript from alignment at scaffold_354:1007757..1038734+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061110 ID=TCONS_00061110|Name=TCONS_00061110|organism=Clytia hemisphaerica|type=transcript|length=30978bp|location=Sequence derived from alignment at scaffold_354:1007757..1038734+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:1007757..1038734+ >TCONS_00061110 ID=TCONS_00061110|Name=TCONS_00061110|organism=Clytia hemisphaerica|type=CDS|length=86400bp|location=Sequence derived from alignment at scaffold_354:1007757..1038734+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061110 vs. Swiss-Prot (Human)
Match: MEG11 (Multiple epidermal growth factor-like domains protein 11 OS=Homo sapiens GN=MEGF11 PE=2 SV=3) HSP 1 Score: 363.614 bits (932), Expect = 3.159e-105 Identity = 233/646 (36.07%), Postives = 295/646 (45.67%), Query Frame = 3
Query: 2796 CKTGYHGNDCRFTGCENNPCINGGKCVMQKGTEFKCDCPAGLTGKFCEKKCPTGYYGRNCLYKCSCV--GFCDSKTGVCNCKAGLMGQYCNEPCPNGLYGVGCVEKCSCDSYMKCNPVNGHCACAAGFYSNKC-EKQCEDGFYGEDCKHKCSCENG---VCDRFNGTCACAKGWYGNKCDTPCPQGSYGQGCIYMCGFKPTEVRKKCNPVNGHMICVAGYRGNNCEHPCDPFWYGEDCTSKCTCMQQNTNMCDPQKGQCICKPGFRGENCEHPCDGTTWGVDCKNQCLCKNGADCDAVTGDCTCIRGFQGAQCESKCDVGTYGDGCTEKCFCSKAHSDGCSHSDGTCICKQGYTGTHCTEKCSRNRWGRNCREKCLCVNGANCD---------------------------------------------HLDGFCDCQPGFQGQYCAQECPQGLFGEACMQSCLCKNNAHCDSVSGACTCLDGFYGEHCEKKCSPGFYGHKCLNKCKCDVNNSIECGKIKGTCFCKPGFVGEFCTEECPYNMWGEGCNQVCYPCRHADGTCDKRDGNCTCAAGFTGTKCDNDCPRDHFGRACLEKCNCASGEICHNVDGTCY-------------TLDDHTLNVMFKIDKATLSSR 4541
C G HG C PC NGG C G +C CP G TG C + CP G +G+NC C C G CD TG C+C AG MG C E CP G +G C + C C + +C+P G C C G+ +C E+ C +G +G C C C+ C G C C GW G+ C+ CP G YG GC C + C+ + G C G+ G C C YG +C+S C+C N C P G C CK G++G +C PC TWG++C C C NGA C + G C+C G+ G CE C GT+G C+E C CS H+DGC G C C G+TG C C RWG NC C C NG +C H+ G C+C PGF G C Q C G FG+ C Q C C NN C + G+C C G+ G+ C + C PGF+G C + C C +N C G C C PG+ G FCT+ CP +G+ C +VC C++ +CD G CTC GFTG C+ C FG C + C C + C +V GTCY L LN KI A + R
Sbjct: 219 CPPGSHGAHCEL----RCPCQNGGTCHHITG---ECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCT---CQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSC--NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCS--HADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSC--HNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQ-CQNG-ASCDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRCDQAALMMEELNPYTKISPALGAER 846 HSP 2 Score: 359.762 bits (922), Expect = 6.276e-104 Identity = 222/590 (37.63%), Postives = 290/590 (49.15%), Query Frame = 3
Query: 2748 TKQCVPDKATNSSVCGCKTGYHGNDCRFTGCENN----------PCINGGKCVMQKGTEFKCDCPAGLTGKFCEKKCPTGYYGRNCLYKCSCV--GFCDSKTGVCNCKAGLMGQYCNEPCPNGLYGVGCVEKCSCDSYMKCNPVNGHCACAAGFYSNKCEKQCEDGFYGEDCKHKCSCENG-VCDRFNGTCACAKGWYGNKCDTPCPQGSYGQGCIYMCGFKPTEVRKKCNPVNGHMICVAGYRGNNC-EHPCDPFWYGEDCTSKCTCMQQNTNMCDPQKGQCICKPGFRGENCEHPCDGTTWGVDCKNQCLCKNGADCDAVTGDCTCIRGFQGAQCESKCDVGTYGDGCTEKCFCSKAHSDGCSHSDGTCICKQGYTGTHCTEKCSRNRWGRNCREKCLCVNGANCDHLDGFCDCQPGFQGQYCAQECPQGLFGEACMQSCLCKNNAHCDSVSGACTCLDGFYGEHCEKKCSPGFYGHKCLNKCKCDVNNSIECGKIKGTCFCKPGFVGEFCTEECPYNMWGEGCNQVCYPCRHADGTCDKRDGNCTCAAGFTGTKCDNDCPRDHFGRACLEKCNCASGEICHNVDGTC 4475
T++CV + + C C+ G+ G DC +GC+++ C NG C G C C AG G CE+ C G +G+ C C C CD + G C C G G YC E CP G +G C +C C + C+ + G CAC G+ C + C G +G++C C C +G CD G C C G+ G++C CP GS+G C C +C+P G C GY+G C E C +G CT C C NT C P G C C+PG+ G +C C +G C+ C C+NGADC ++TG CTC GF G C C GTYG C+ C C+ + CS DG+C CK+G+ G CT C WG NC E C C NGA C +DG C C PG+ G C CP G FG C + C C + CD V+G C CL G+ G C+ C PG +G C C C+ N C G+C C PGF G C CP +G GC Q C C H+ C G C C GF+G C+ C +FG+ C + C+CA+ C +DG+C
Sbjct: 104 TEECVHGRCVSPDTCHCEPGWGGPDCS-SGCDSDHWGPHCSNRCQCQNGALCNPITGA---CVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCD---CHNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGT--CSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCE--NGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCANNGTCSPIDGSC 682 HSP 3 Score: 326.635 bits (836), Expect = 1.134e-92 Identity = 201/547 (36.75%), Postives = 267/547 (48.81%), Query Frame = 3
Query: 2790 CGCKTGYHGNDCR---------FTGCENNPCINGGKCVMQKGTEFKCDCPAGLTGKFC-EKKCPTGYYGRNCLYKCSCVG----FCDSKTGVCNCKAGLMGQYCNEPCPNGLYGVGCVEKCSCDSYMKCNPVNGHCACAAGFYSNKCEKQCEDGFYGEDCKHKCSCENG-VCDRFNGTCACAKGWYGNKCDTPCPQGSYGQGCIYMCGFKPTEVRKKCNPVNGHMICVAGYRGNNCEHPCDPFWYGEDCTSKCTCMQQNTNMCDPQKGQCICKPGFRGENCEHPCDGTTWGVDCKNQCLCKNGADCDAVTGDCTCIRGFQGAQCESKCDVGTYGDGCTEKCFCSKAHSDGCSHSDGTCICKQGYTGTHCTEKCSRNRWGRNCREKCLCVNGANCDHLDGFCDCQPGFQGQYCAQECPQGLFGEACMQSCLCKNNAHCDSVSGACTCLDGFYGEHCEKKCSPGFYGHKCLNKCKCDVNNSIECGKIKGTCFCKPGFVGEFCTEECPYNMWGEGCNQVCYPCRHADGTCDKRDGNCTCAAGFTGTKCDN 4385
C C GY G+ C+ F ++ C NGG+C G C+C G G C E+ CP G +G C C C C TG C C+ G G +CNE CP G YG GC C+C + C+ + G C CA GF C C G YG +C CSC NG C +G+C C +GW G C PCP G++G C C C+P++G C G+ G+ CE PC +G +C+ C C + + CDP G C C G+ G C+ C WG +C C C+NG C G C C GF+G C+ C G YG GC + C S C H G C C G++G C + C+ +G++C + C C N C +DG C C PG+ G+ C+Q CP G +G AC +C C N A C + GAC C G+ G C ++C F+G C C+C N C I G C C+ GF G+ C + C +G GC Q+C C + + TCD G C C+ GF G +CD
Sbjct: 290 CHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGA---CECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCT---CANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDC--SHADGCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQC--QNGASCDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLCE-CMN-NSTCDHVTGTCYCSPGFKGIRCDQ 824 HSP 4 Score: 318.161 bits (814), Expect = 7.594e-90 Identity = 195/515 (37.86%), Postives = 264/515 (51.26%), Query Frame = 3
Query: 2754 QCVPDKATNSSVCGCKTGYHGNDCRFTGCENNPCINGGKCVMQ-----------KGTEFKCDCPAGLTGKFCEKKCPTGYYGRNCLYKCSCV--GFCDSKTGVCNCKAGLMGQYCNEPCPNGLYGVGCVEKCSCDSYMKCNPVNGHCACAAGFYSNKCEKQCEDGFYGEDCKHKCSCENGV-CDRFNGTCACAKGWYGNKCDTPCPQGSYGQGCIYMCGFKPTEVRKKCNPVNGHMICVAGYRGNNCEHPCDPFWYGEDCTSKCTCMQQNTNMCDPQKGQCICKPGFRGENCEHPCDGTTWGVDCKNQC-LCKNGA-DCDAVTGDCTCIRGFQGAQCESKCDVGTYGDGCTEKCFCSKAHSDGCSHSDGTCICKQGYTGTHCTEKCSRNRWGRNCREKCLCVNGANCDHLDGFCDCQPGFQGQYCAQECPQGLFGEACMQSCLCKNNAHCDSVSGACTCLDGFYGEHCEKKCSPGFYGHKCLNKCKCDVNNSIECGKIKGTCFCKPGFVGEFCTE 4250
QC P + C C+ GY G C+ C ++G C + C C G +G C + CP GYYG C C+C C S TG C C G MG+ C C G YG C CSC++ C+PV+G C C G+ C C G +G +C C+C NG C +G+C+C GW G+ C+ PCP G++G C C + C+PV GH C+AG+ G C+ C P +G +C+ C+C +N C P+ G C C PGFRG C+ C +G C C LC + + C ++G C C+ GF GA C C G +G C + C C A++ CS DG+C C G+ G C++ C WG C C C NGA+C DG C C PG+ G +C Q CP FG+ C + C C+N A CD +SG CTC GF G+HCE++C+PG +G+ C C+C +NNS C + GTC+C PGF G C +
Sbjct: 325 QCSP----TTGACECEPGYKGPRCQERLCPEG--LHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHAD---GCDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSC--ENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSC--ANNGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGASCDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLCEC-MNNST-CDHVTGTCYCSPGFKGIRCDQ 824 HSP 5 Score: 270.396 bits (690), Expect = 3.714e-74 Identity = 169/453 (37.31%), Postives = 228/453 (50.33%), Query Frame = 3
Query: 3153 CACAAGFYSNKCEKQCEDGFYGEDCKHKCSCENG-VCDRFNGTCACAKGWYGNKCDTPCPQGSYGQGCIYMCGFKPTEVRKKCNPVNGHMICVAGYRGNNCEHPCDPFWYGEDCTSKCTCMQQNTNMCDPQKGQCICKPGFRGENCEHPCDGTTWGVDCKNQCLCKNGADCDAVTGDCTCIRGFQGAQCESKCDVGTYGDGCTEKCFCSKAHSDG-CSHSDGTCICKQGYTGTHCTEK-CSRNRWGRNCREKCLCV--NGANCDHLDGFCDCQPGFQGQYCAQECPQGLFGEACMQSCLCKNNAHCDSVSGACTCLDGFYGEHCEKKCSPGFYGHKCLNKCKCDVNNSIECGKIKGTCFCKPGFVGEFCTEECPYNMWGEGCNQVCYPCRHADGTCDKRDGNCTCAAGFTGTKCDNDCPRDHFGRACLEKCNCASGEICHNVDGTCYTLDDHT 4496
C C G+ C C+ +G C ++C C+NG +C+ G C CA G+ G +C+ C G++G+GC C + C+P G +C GY G CE C P +G C +C C QN C G+C C PG+ G C PC T+G +C C C +G CD VTG C C G+ G +C+ +C G++G C++ C C H+ G CS + G C C+ GY G C E+ C G C C C N +C + G C CQPG+ G +C + CP G +G+ C C C+N A C S++G CTC GF GE C C+ G YG C + C C NN C + G+C CK G+ G CT CP WG CN+ C A C DG+C+C G+ G C+ CP FG C E C+C+ + C V G C L T
Sbjct: 118 CHCEPGWGGPDCSSGCDSDHWGPHCSNRCQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCR---HGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPC--QNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDC---HNGGQCSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSC--NNGGTCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGA--ACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADGCDPVTGHCCCLAGWT 558 HSP 6 Score: 157.918 bits (398), Expect = 1.213e-38 Identity = 91/240 (37.92%), Postives = 123/240 (51.25%), Query Frame = 3
Query: 3768 FCSKAHSDGCSH----SDGTCICKQGYTGTHCTEKCSRNRWGRNCREKCLCVNGANCDHLDGFCDCQPGFQGQYCAQECPQGLFGEACMQSCLCKNNAHCDSVSGACTCLDGFYGEHCEKKCSPGFYGHKCLNKCKCDVNNSIECGKIKGTCFCKPGFVGEFCTEECPYNMWGEGCNQVCYPCRHADGTCDKRDGNCTCAAGFTGTKCDNDCPRDHFGRACLEKCNCASGEICHNVDGTC 4475
FC ++ C H S TC C+ G+ G C+ C + WG +C +C C NGA C+ + G C C GF+G C + C G G+ C C C++ A CD +G C C G+ G +CE+ C PG +G C +C C N C I G C C PG+ G C + CP +G+ C+Q C PC H G CD G C C AG+ G +C +CP FG C + C+C +G C G C
Sbjct: 98 FCIPLCTEECVHGRCVSPDTCHCEPGWGGPDCSSGCDSDHWGPHCSNRCQCQNGALCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPC--QNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDC-PCHHG-GQCDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQCSPTTGAC 333 The following BLAST results are available for this feature:
BLAST of TCONS_00061110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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