TCONS_00061109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061109
Unique NameTCONS_00061109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061109 ID=TCONS_00061109|Name=TCONS_00061109|organism=Clytia hemisphaerica|type=transcript|length=1381bp
TCATTACGGCATTTCAATACTGTTCATATTCTCTTTTTAACCTTTCCTTT
ATGAGCGGATTTAGTTGTTGCTTGCGGTATGGATGTGTCACGGGTTTGGG
TCCGCAATCAAAGATACCATCGCATTGGATTGATTGTGTTGTATCTCCAT
GACGTTGCTGACATCTTTTTGGAAAGCAGTAAAATTGTCTTgtgtttcaa
aaacaaattcccaaacaaagttttggaaacacttAGCATTGTTGGTTTCT
TTGGATTTACGTTTTCATGGTTTTGGTCTCGTCTTTTTCTCTATCCACAA
ATCGTGTTATTTTCAACTGGCTTTATCGCGCGAACGATGTTACCTGAAGC
TAACTTCTATTTTTTGTTTAACGTCATGCTGTGGTCTCTGATGTGTCTTA
ACGTGTGGTGGTTTCATTTCATTCTTGCGCTGGTGTATCGTATTGCAACT
GGTCAAACTAAAGGCGTTGAAGATACAAGAGAATATGTCTCGGAAAAAGA
AAACGGTGCAGCACACCATGTTAAGAATGGAGATGCAACCAATGGCTCTG
CTAACAAAAAGCAGAAAGCAAGCTAAATAAGGCGCTGTTTTGGTTTGTTG
GTAGTTTGGTTAATGTTTTGGAGGTCACACATAACATCCTCTGATTGGCT
GGATTGGTGGAATCAATGTCATGACAATGCATCATCcattttcatgatat
tcatgacgtaatgttttctacggaaataccccggttttagccagtactGG
GAactttaaactagacaaaagctGTATAAAATTTTCCACTATTGGCAAAA
actggggtctttccgtagaaaacattacgtcacaaatatcatgaattcgA
CACTCAAATGGTATCATATCAGTTGAAGATTTTTGTACAAAGGAAGATGG
ACCAACTATAGTAAATGTTGGTAATCTTTTGATTTAGTAATAATGATATT
TGATTCTTGTTCCATACGCAAATTTATACCCACACATTataatacttttt
tttactttttcaaatttgtataaCTTTTGTTCAGAAATGACTTATTACAT
AAACTGATTTGACCATCATCATGCTTATTGGTAGGTTAATAGATGGTTGT
TTTTAGTAgaattattgaatttaaaaagaatttaacGACTTCATTATATT
TTACGCATTTCATCATCTTAGCTTACTATATATTTTCTTTACTGTAGAAA
AATAagatttatatttttgaaacattAGGTCGAAAAGTAATTTGAAGACA
CAAAATCTTTGTGGTCGGAAAAACAGCTATTATCGTGATTTTGGCTTCGT
TTCTCGGGACTTTTTGCGATAtaagaaattttgtgaaaaaattctgagaa
attttttcgagattttgaTCCAAACTTGCTT
Run BLAST on NCBI

transcript from alignment at scaffold_354:989791..1003307+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061109 ID=TCONS_00061109|Name=TCONS_00061109|organism=Clytia hemisphaerica|type=transcript|length=13517bp|location=Sequence derived from alignment at scaffold_354:989791..1003307+ (Clytia hemisphaerica)
TCATTACGGCATTTCAATACTGTTCATATTCTCTTTTTAACCTTTCCTTT
ATGAGCGGATTTAGTTGTTGCTTGCGGTATGGATGTGTCACGGGTTTGGG
TCCGCAATCAAAGGTACCTAGCAGAACACCAACAACAGATATTGATCACT
AATCCACGTTACTAAcagcaaaagatttttttgttggTTTAAAACTCTCA
TTAATAATTATATTAGTTGTCTATTTTTTTGTCAGGCtgctaaaaattat
tttatcatgATCAGGCTTTTGAATATTAATTTGAAAAGTAAGAAATCGAA
AAGTAGGGCTTTCACCGTGGCTAGAATATGTACCcgtatttttttttgtt
aattgctgttctatctctgtctccgagctttataagaacatcaagattgt
cAGTTTATCATTGAAATGTTTCTCTGATTTTCCCtcacaaaacatttttt
attgctagatgtctttgaatctgtacccaatagaacacttgaactaattt
tggacatattttggggtattttgaggaaacaatagttttttgtcgaaatt
aaaattataagaattatattcaagatgacaactttcctgtaagtttgaat
gataaattttgaaggtgatGGCTCGagattttcacagtattatcttgatg
tactttttcattgatttctaaaaagatttcactgaaatattgcgaGGGCA
TTCAaggcactttattaattttaGAGTTCCTTCAGCCtggccattttgtg
cttgtttaaatttcttatcgTTGATCTTTCTAAAAACTAATAAGATTTAC
CATTAacgatgctacattactgatttcttgatcaacaaatagtcatcaaa
tacgacagagatagaacaacagaaattcagatgttattaTTCCAGCTGCG
GCTTTCTTAAACTATGTTCAAAGTACACTGACTGATAATGCCCACCACCG
ATTCAAACAACCATAACATTTTTCTTTAGATACCATCGCATTGGATTGAT
TGTGTTGTATCTCCATGACGTTGCTGACATCTTTTTGGAAAGCAGTAAAA
TTGTCTTgtgtttcaaaaacaaattcccaaacaaagttttggaaacactt
AGCATTGTTGGTTTCTTTGGATTTACGTTTTCATGGTTAGTAATATAGAT
CtattaagtaagtaagtttgcgactgCAGTCGAGGGCGAGCCTAGGCTCC
CTTCTCTATTATTATCCTTGTCGTCCAGGAGGTTAGCGTTCGATTCTCAC
TTGGTgctgtgattcacttggcaagtgaatttACCTTCGCCCAGGCCAAT
TCATGCCATTATTAGGGGaatagcataccgcagtgattctaaaaatagac
atcaaaattactgtttgtccgagttttaatcccatcatcctttgcaACAA
TTGCTTTTGTAAGTTAATtacacttattgacaatacaaaggtaataactt
gcacgcattacgaatcataatgaaaaggattgtgggattgaatttcggtc
aaaggttaaaagtaataattatgatgTTTGCgtagcagggggggggggtt
ggtagtaaaatctcagacataatgacgtttactacggtggtggtgtgacg
aaaaatcgaaaaaaaaaattactacccagggtagttaaatactaaaatgg
gtggtatctatgtggtATCTatatttttactacctgggtagttaaaaccg
GTAAAATTATTAACTGGTataattctcgaaattttttgttaatataaaaa
agattttaattctaagggcaaaacattagattttgcactaagtgaaaaat
ctgtcacagaaataatcactttttagctttttttgtaaaataagtccaaa
aatcaaccaaaaaataggtggtctccatgaaaaattgtcccaaaaacttt
tactaccagggtagtaaaatacctcttccaagagtctgggtggtggtatc
tAAAacttcgtaaaaatccttttactactcatatatgtctgagattttac
tatcgACCCCCCCCCTGTGCTATTGGGTGAACCAGTCAAGAAGTCTGTCG
GTGACTGCGCTAGGTGGTATCGATTCCATAATAAACCGTGGGCAAGGCGA
AAGTGCTCTGGCCTCACTAGTGGTTCACGCTGGATTAACGCACTTTAATC
GAAAATTGTGTGTCATTTTCACAAGCTGACATGTAATATGAACCATATCG
TAGACGGTTCTAACGAGGTGGTTCCTAAACCGCACAACATATGACCGGAC
ATTCTCTGTAAAATAGAAGATACAGCAGACTCACGGTTATTCGAACCTGC
ACTTATTCGAATAATCCGGTTATTCGACTTATTCGAATAATCAAGTTATT
CGAAGTGAGATGGTGTTCCCCTTGGATCTGCTTACTCAACCCAGGTGtaa
aaacctcactttttacagttattttttcttataaataattttctactttt
tctttatttttggcaCGCGCCGTAAGCGCTCGCTTCGATGTACTTAATTT
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NNNNNNCTCTACGATTTACAAACGTATGACCGTTTTTTACTCGACATTct
gagttttttattttgagaagtTTTTTCTTGTCTCGTTTTTTcttgatatt
tgatattttgtgattttctctgcTGAGATTTTTCTGTGATTCTTGAGACC
ATTgctccaagattttttctttgattcttGAGACTGTTTGCTCCAAGATC
TGTGTTTTTAGTCGTTTTTCCTTTATGCCTAGGTGGTGAAAGGGCTTTGT
TTCTGTATCTCCGGTCCATAGGATTAGGCCTGTTCAAGTATTCCTTATTC
TTCccggttgttttttttctcctgtggGAAGAGGAGaacataaagttttg
aattgcgATTCTGAATTTTTTCTTGACGATTTTTTTNNNNNNNNNNNNNN
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NNCATTGACcgctttaattttttgaaaaaatatttggctGGCGAAGCCTT
GGATTCGATTAAAGGTTTGACTCTAAACTCTGATAATTACAAAGAAGCCA
TAGAAATATTATGCGAGAGGTATGGGAACGAGCAAGTTTTGATTTCGTCA
CACATGCAATCCCTCTTGAGAATACAGAAGATAAGATCAAAAGACAACAT
AAAGAGCCTTCGAACGCTTTACAACCACGTTGAAAGCTGTGTGCGAAATT
TGAAAGCCTTGAAGCTCGAAGCTAAAGGTTATGGCAGTCTTTTGATCCCT
ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNataccacccccaaaaatgccaaattt
ggcaattttttcactgaattcctcatttttgataccattttactgggtac
atcttattaacgaccgttcaaatgttaaatatctcaatcattttccaagt
ttgttaaaatacctttcatgccttgattgaagaaaaaattttgtgatttt
tttttacttttgaaaaaaatgttttcaatttttttgcttccggaattttt
aaaaacctaaaattttaagtgaaaaattgaaaaatgtgctcacttagtac
accatatcctaccaaaatcgacaattttgggcttaggcaccacccatgtt
gcagttagtccactggtggagtaactgttttcccaaaatttggtttgtat
accaccacggtagtaattgtcatagtgtttatataataactgcatgaccc
ccccctgtCGATTTGCTTTTGTTTCCTGCAACAGTGATACTTTAAGAGTT
GAGTTGCATGGATTTTGTGATAGTTCTGAGATTCTTTATTGCAGTGTTAT
TTATTTGAGAGTGATTTCCGAGACTGGGATCAGtgttttctttttgactt
cgaAAAGTAAGGTTGCTCCTTTGAAAAAGGTGACGATTCCTAGACTTGAA
CTTCTTAGTTGTGTGTTGTTGAGTGATTTGTTGAATAATGTTAGATCTGC
TCTCTCCGGTCGTATTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACGA
ACGGACAAAGCATCAGGGGATTGATTCAACACTGGCCGACGTTCGAAGAA
GATATTGGATTGTGCAAGGAAGAAAAGCCGTGAAGAACACCATCAGACAA
TGTGTCGTATGTATTCGTTTTCAAGGTAGAACATTGCGTTCACCTCCAAC
ACCGGACTTACCCGATTATAGGGTTGATTTTCACGAACGTTCATTTAATT
CTGTTGCCATGGATTTTGCAGGTCCcctttattttagaaattttttagaT
AATGATAAAACCAAAAAGGACAGTCTGAAATGTTACATTCTTCTCCTTAC
GTGTGCTACTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNTACCGAACCAGCTCAAATGGTTGAAAACTGTGAGAAAGTAGTACATAA
TCGGGGGAGAACCAGTACGAGAAAGGCTGCAATCGAGGGACAGAACCTGC
GAAGATTAAGAAATCAATATCTTTGAAACTCTTTCATGAACTTTTATTTC
TTTGGTCGTTGAGGATGtaaaaacctcactttttacAGTTATTTTTTCTT
ATAAATAATTTtctactttttctttatttttggcaCGCGCCGTAAGCGCT
CGCTTCGATGTACttaattttcttattatttgaTTGGTagtttatcacgt
gacttttgtGACTTATTCTTATTGGCTAATTTTTCACTTATAACGGCCTC
GTGTTTAGAAGGTCGCTCTCTTATTTCAGTATTTTATAGAAGATAAGGTG
CATCATGAAATTTATTGAAGATATTGTTTGAAGTGACTATCCTGATTTTC
CTGAAAGGAATTAACATAAATTTCCGTTTTTACACCAGGCAAAAACACTC
TTGGTTGTTCGAACTTCAGTTATTTGaactttcagttattcgaagcgATT
TCTTTTCCCATTACTTTCCCATCTGATTACATTATATCCCACGGTACATT
ATAGGCTAAATCACCCTcagttattcgaatttttcttattGGGAAATCAT
CGAGTGACAACATTGATAGTTtgcgattttattacttttttctttaagaa
aaaggTTTCAATATTGATGGCTATATATCGCTATTCAAGCAATTTTTTTG
TGTTCATTACAATCAACTAAACCGCAATGCCTCAATTACTTCAGGAAAGT
CCCTCCAATTAAGGTCAAGTTGAGAATCTTGtgggaaatgaatttttcag
ttattcgaagtaaattcttatccccCTTGGAGCTTCGAATAACCAGGAGT
TTACTGTAGTTAGttttttgatgttctgtttatattttcaggtttaattG
TCTTCCTTTTCTTACGCTCCGAAACTATATAGCTTATTCTTCTACGCAAT
TGTCAGTTCTTCTTTAActatagcctatactagacgtcacccgcgttttt
tttacgcaattaacgtctattccactttgcgactttttcgaatgttttga
gcccgggttttcgggctctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNaaacacttgaaaggcttctatttttcgaaa
atcgtcaaagtggaactcactaagaaacgagatgaaaaattccggttttt
agtgaggtgctcgctacttTAACTATTGTTTTGTCTTTTCATCATAGGTT
TTGGTCTCGTCTTTTTCTCTATCCACAAATCGTGTTATTTTCAACTGGCT
TTATCGCGCGAACGATGTTACCTGAAGCTAACTTCTATTTTTTGTTTAAC
GTCATGCTGTGGTCTCTGATGTGTCTTAACGTGTGGTGGTTTCATTTCAT
TCTTGCGCTGGTGTATCGTATTGCAACTGGTCAAACTAAAGGCGTTGAAG
ATACAAGAGAATATGTCTCGGAAAAAGAAAACGGTGCAGCACACCATGTT
AAGAATGGAGATGCAACCAATGGCTCTGCTAACAAAAAGCAGAAAGCAAG
GTAAGAGTGGATGATTTTGGATTggtaaatttttcgaaattatcTTACTT
TTACTTTCAAATCTGGTGTTTGTCTGAAAATCTTGCGGATCACACGTTTT
GGtttagaaagaaagaagtgGCTTGTTCCCATCCATCCACGGGATATATC
TCCAGCTGCATTCGGGGCACTAAACTAAATGGATGGAACTTGTGTGATAT
GGTTTGGTGGTTTAGCTTAAACCCTCCCTTTCTAAGGTGCTGTGGCCTTC
TTGTAGAAACCGCAGAAAGAGGATAGAAAAATTTCGTCAGGAATGGGATG
TCAAGAGAAAGAGGGATGCCTTTTGGATGTGGTTCCCCTTCGAAGCGGGG
ATCGACAAAGGCTTTTggttattttataattttcgaTACTTTTTCACGTT
CAAAAGGAATTTTGCATAATAAATTGGGAGtactaaacatcgaccagaaa
tggcgaccacgaccagcgaccacgaccggcgactagataaatttgaatta
ttgagtttatctgctctctccaccgtagagaatgttaaatcaagtcctca
gaatactaaaaagtgacctttgaagtaaccagtcattttcttgacaaagt
agTGActttatttgacaaaaatattgacagggtcattaagtatgatgttt
gtaagctttgttacaccaaaaacttaaattatgctgaatgagatgctTTT
AGTATGCatagatagaacttgtcagtaggaaaaaattgggaaggccagtt
ttagagatatgaatctaatcaattattctattgtttttatgctgacaaaa
tgactaatttcgacagaaataacaatctgatgatgaaataaaGCTTGgta
gaaattgacaccataatcaagctccaagagcgttgaaatggTTGTTATAC
GTATTTGGCACGTGGCTTTAAATAgacgagacaggggtgagcttactctt
caatatgATTTATATTCAAATGATTAGGAGAGACACTCTAAGTTGGAGAA
AGGGAAAAAACTCGacaacccaaatttatctggtcgctggtcgtggtcgc
cggtcgtggtcgccggtcgtggtcgtcatttctggtcgacgtttagaaac
tccctaaTAAATTACAATTTATCTATGTTATCAATTGTTTCTCTCTCTTT
TTGTTTAGCTAAATAAGGCGCTGTTTTGGTTTGTTGGTAGTTTGGTTAAT
GTTTTGGAGGTCACACATAACATCCTCTGATTGGCTGGATTGGTGGAATC
AATGTCATGACAATGCATCATCcattttcatgatattcatgacgtaatgt
tttctacggaaataccccggttttagccagtactGGGAactttaaactag
acaaaagctGTATAAAATTTTCCACTATTGGCAAAAactggggtctttcc
gtagaaaacattacgtcacaaatatcatgaattcgACACTCAAATGGTAT
CATATCAGTTGAAGATTTTTGTACAAAGGAAGATGGACCAACTATAGTAA
ATGTTGGTAATCTTTTGATTTAGTAATAATGATATTTGATTCTTGTTCCA
TACGCAAATTTATACCCACACATTataatacttttttttactttttcaaa
tttgtataaCTTTTGTTCAGAAATGACTTATTACATAAACTGATTTGACC
ATCATCATGCTTATTGGTAGGTTAATAGATGGTTGTTTTTAGTAgaatta
ttgaatttaaaaagaatttaacGACTTCATTATATTTTACGCATTTCATC
ATCTTAGCTTACTATATATTTTCTTTACTGTAGAAAAATAagatttatat
ttttgaaacattAGGTCGAAAAGTAATTTGAAGACACAAAATCTTTGTGG
TCGGAAAAACAGCTATTATCGTGATTTTGGCTTCGTTTCTCGGGACTTTT
TGCGATAtaagaaattttgtgaaaaaattctgagaaattttttcgagatt
ttgaTCCAAACTTGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038341XLOC_038341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061109-exon-scaffold_354-1491911889:989791..989903TCONS_00061109-exon-scaffold_354-1491911889:989791..989903Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1510915933:989791..989903TCONS_00061109-exon-scaffold_354-1510915933:989791..989903Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1575043694:989791..989903TCONS_00061109-exon-scaffold_354-1575043694:989791..989903Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1491911889:990770..990925TCONS_00061109-exon-scaffold_354-1491911889:990770..990925Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1510915933:990770..990925TCONS_00061109-exon-scaffold_354-1510915933:990770..990925Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1575043694:990770..990925TCONS_00061109-exon-scaffold_354-1575043694:990770..990925Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1491911889:1001038..1001340TCONS_00061109-exon-scaffold_354-1491911889:1001038..1001340Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1510915933:1001038..1001340TCONS_00061109-exon-scaffold_354-1510915933:1001038..1001340Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1575043694:1001038..1001340TCONS_00061109-exon-scaffold_354-1575043694:1001038..1001340Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1491911889:1002499..1003307TCONS_00061109-exon-scaffold_354-1491911889:1002499..1003307Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1510915933:1002499..1003307TCONS_00061109-exon-scaffold_354-1510915933:1002499..1003307Clytia hemisphaericaexon
TCONS_00061109-exon-scaffold_354-1575043694:1002499..1003307TCONS_00061109-exon-scaffold_354-1575043694:1002499..1003307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:989791..1003307 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.37499	0	0	0.536095	0	0	0	0	0	1.14147	0	0.322213	1.00537	0.247801	0.316484	0.184038	0.432532	0.28708	0	0.206724	0	0	0	1.12657	0	0	0.521748	0.355845	0.884617	0.475628
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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