TCONS_00061106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061106
Unique NameTCONS_00061106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3815

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061106 ID=TCONS_00061106|Name=TCONS_00061106|organism=Clytia hemisphaerica|type=transcript|length=3815bp
tttttaaagtttcagacGGGGGATACGGTGCAGATTTAGCTCTGATCTTC
CAGCTGAACAATCTTCGTTCATAACTTAACTTATTGCTACTATTTATGTT
GCTTTTACAGACTTTTTATGATAATGAGAATAAGTGATAAGTAAATCTAT
AATTCAGCAATTTAAAAACATGGGAGATTTAGCAAAGAAATACAACCTGA
AAAGTCCAGCTGTGAAGCGGTTAATGAGAGAAGCTGCTGAACTTAGTGAA
CCTACTGACCAATACTTTGCTCAACCTCTGGATGATAATCTTTTTGAATG
GCATTTCACTGTTAGAGGACCGCCCGATACAGAATTTGATGATGGGCGGT
ATCATGGTAGAATTACATTACCGCCCGAGTATCCAATGAAACCACCGAGC
ATCATCTTACTAACTCCAAATGGGAGATTTGAGATTGGAAAGAAAATCTG
TCTGAGTATGTCAGCGCATCATCCTGAAACATGGCAGCCATCTTGGAGTA
TTCGTACAGTATTACTCGCTTTGATTGGTTTCATGCCAACACCCGGCGGT
GGAGCCATCGGCGCTCTAGATCATACGCCAGAGGAACGGAAAGTCATGGC
TAAAAGATCGAAAACCTGGACTTGCGAGGCTTGTGGGAGCAATAACGAAG
CATCACTTTTAGAAagaGATCCAAcgaaagaaaaggaagaaactGAAGAA
GTAAAAGAACTTGCTTCTCAAATCAATTTCAAGGGGGAAGATAAAAGTAA
ACAGTCAGCCGCAACACCAACTCAATCTCAAACAACGACAACGACGTCAC
AATCTGCCATAAATAACTCACAACAACAAGCAGCTGCTGCACAGATGTCT
CAAATGTATGCTAACTACAACCAATTCTATGGtatgcaacaacaacaaca
aaacccTATGTTTGCCAACCAACAATTCCAACAACCGTCTCAGCAACAAA
CACCGTCTTCTCAACCCACAACGACCGAAACTACAACAACTCAATCGTCA
GCTCAACCGAATACAGGCTCTACTGAAACAACGacaaacgaaaatactga
tacGACGAACTTACGACAACGCCGACAAGGTGCCGACAGTAGCCGCTCTT
CTTCTCCGGCAACGACGCCGACACCAACACATAATCAAACACAAGGACAA
TCAAAGTTAGAAACTGTTTCGTTTTATATGTTATGGATTGTATTAGTACC
ACTGGTACTCTTGATATTGAGACGTTTAGGAATGGAGAATTCGGGTATGG
GAAaacattaataaaaaaaaaggagATGAACGGTTATTCCAGAAAATAAT
ATTACCTCCTTTGCTGAAaaggatatattttttgatGGTTAAACCCTCTG
TGTTTTCGTCGAAATTTCAGAGGTATCTCTTagtttcttcaaaattttag
agatttttcttAGACATGTAACGAAATCCGCCTAGATTTTAAAGGATTTT
CGGCTACCTCTCCCTCATGGACGGAAAAAACAATCTCCTCAACATGCAAG
GGGAAGAACAATTTTTTGCTAAGAGGTTTTGATTGTGATAATTGCCAATA
TTTAACAGCGTTTCATTCTTAAAAAATGATTTGTCTGAGatattaaaaac
gaatgataagATGTCAAGAAGATGAAAATACCTTAAAAGGGGGTCTGACA
CTTGAAGGGCTAACATTCTTTCGTATTTTTTTGTACGTTGTACGAAAAAA
TACGATTCATAGTAGACAAAAGACTTGGCTATGGAAGCTGCTCGGaaagc
taatatattttttaacaGTATTTTCGTGGGCGTTCTTTGAAGTCTTAAGT
TTATAAggaatactttaggcgtacaaactctcgcgagcagaaactttcgc
gattttcacgtattttggccctttttgcgaaagcaaatgtctttaaaaat
tctaggaagggccatttgcgaaagtttatactcgcgaaaaattcttgaca
aaatagaaaatctttaaaacttcaagctttgaataaaatgtaacttttat
ggcactttttagccttaaagactaataagtcaaaggaaaaatgtttcaag
ccaatccaagaagtatttgtccctctaagccattttgtcatgtgaaaatt
ctcaattttacgtcttgattcgcgaaagtttatgctcgcGAAAGTTTGTA
CGCCTAAAGTATAACGCCGTTACTATGTGAATAAATAATACGCTGCAATT
CTTTTGGGTAATGGGCTCTTCCAGAAGATGTCCGTACATGGGGTGGATGA
TAAAGTGTCCGGGGGTAGTGAAAAATCTACAAAATTTGTCTTGTCCGGGG
GGTAAACTTGCTCTGTTTGGCGGTAATTTTGCTCTGTTTGAGGGTAAATT
TGATTGTCCATGGGGTCAACTGATGCTTCTCCGAGGGGTTAGACCTGCTG
TTCGGGGGTATAATTTCTATTGACCTTATCAGAGTTTTTGATTTTTCTAA
AAATGCGATGCATTGTGGGATTGTTTTGAGTGTATTACAATAGAATTCCc
ttgaggaattcctaagagatttctattgtaatacactcgaaacaatccca
caatgcatcgcttttttagaaaaatcaaaaactccgataagatttATTCT
AAAGGAGACTTGGGGCGAAAATAACAAattgtagtgtttccggaatgccg
GTGAGGGAAAAAGCTCTCATGTGGCCGGCCGGtaatgaattattttttgc
tatttttgataacttatgatcattgaaaaataactttaaagataactttt
atgtacaaataGTATGAATTAAGCCCTGAATACCAATGTATCAACTATgc
taacgaacaaaacttgatttacaagcgggaatatctaaccaaacgacatt
tgatagcttgaacggtcaaaTTGATTTTCTATATAATGGAccatgaaccc
atagtctgtggccgggtcagaattttttttttcacccggctggtttccgg
aaacactacatttttttttattttcgactgacaattcaatttttctaaat
accCTGGGTCTCAGTAAAGCCCAAATGAAGTTCGAGTGATTTTAACATGA
TCTTTAAGCAGATTCCAATCTCCGTGCATGGCACATGTCACTCTAAAGAC
CATGGCTCCGTAAGAAAATTTACCTAGTATCTTTTTCATTCAGATTTGGG
TTGAATATGAAATGAGTTTTTGAGCGCACTGATTGGCTAAATATCCCTTT
GTATTTGCCATATCCCTTTGTATTTGCCATATCCATTTAAAACActaaaa
aattttgattgtgaTAATTGCCAATATTTAACAGCGTTTCATTCTTAAAA
AATGATTTGTCTGAGatattaaaaacgaatgataagATGTCAAGAAGATG
AAAATACCTTAAAAGGGGGTCTGACACTTGAAGGGCTAACATTCTTTCGT
ATTTTTTTGTACGTTGTACGAAAAAATACGATTCATAGTAGACAAAAGAC
TTGGCTATGGAAGCTGCTCGGaaagctaatatattttttaacaGTATTTT
CGTGGGCGTTCTTTGAAGTCTTAAGTTTATAAggaatactttaggcgtac
aaactctcgcgagcagaaactttcgcgattttcacgtattttggcccttt
ttgcgaaagcaaatgtctttaaaaattctaggaagggccatttgcgaaag
tttatactcgcgaaaaattcttgacaaaatagaaaatctttaaaacttca
agctttgaataaaatgtaacttttatggcactttttagccttaaagacta
ataagtcaaaggaaaaatgtttcaagccaatccaagaagtatttgtccct
ctaagccattttgtc
Run BLAST on NCBI

transcript from alignment at scaffold_354:955020..964906+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061106 ID=TCONS_00061106|Name=TCONS_00061106|organism=Clytia hemisphaerica|type=transcript|length=9887bp|location=Sequence derived from alignment at scaffold_354:955020..964906+ (Clytia hemisphaerica)
tttttaaagtttcagacGGGGGATACGGTGCAGATTTAGCTCTGATCTTC
CAGCTGAACAATCTTCGTTCATAACTTAACTTATTGCTACTATTTATGTT
GCTTTTACAGACTTTTTATGATAATGAGAATAAGTGATAAGTAAATCTAT
AATTCAGCAATTTAAAAACATGGGAGATTTAGCAAAGAAATACAACCTGA
AAAGTCCAGGTaaggtttttcttttattaattcTGATATCACTCTGCTGT
AGTGTTACTTAGTCAGTGATTAGAATCTAGTTAATTAACAATTCTCATCA
AATCTCATATGTCTAATAAAAACACCATTAGATTTTTCTTCCATGGACTT
TATTAGGACCCCTCGTTTATTAAATTTAAGATTTATCATCACAATAAAAG
TCTCTTAATTTTCACTAGAAAGCTTGATCTATATTTGCCTTGTTTAAgag
ttttcagaagtacaatatCCAACCCCCTGGCAACTAGATCAACACATCAA
CCCGTTTTATTATCTGAAAATCTTTATTCCAAACCCGCATTATAAATTAG
AAACATGCTCAAGTATTATAAAGACCAATTTTTCCATCGTGTTACTAGTG
TTAACTCGACCTTATTTAATTATGTTTAGCTGTGAAGCGGTTAATGAGAG
AAGCTGCTGAACTTAGTGAACCTACTGACCAATACTTTGCTCAACCTCTG
GATGTAAGTTAGATTTTATTGGCCTAGTTTTCAAATATATTGAGTCTTTc
tgaaaaaatccgttcatagTGGTGGAGTACATATTATTTTTCCAAtgata
tttcaagatttttcaaatatttggactgacaaaaaatgtaaatataagAA
GCTTTTGATTAAAACACCAATAAACTTATTATGAATCTAACCTCTAGATT
CAGTTATtataaatttgaacaaattttagctaaaggttttttaaacaaaa
taatattttcaaggtatgccaatattttttgtttcgagcaaatttaaaat
ttcagacCTTTGTTTTCACAGGATAATCTTTTTGAATGGCATTTCACTGT
TAGAGGACCGCCCGATACAGAATTTGATGATGGGCGGTATCATGGTAGAA
TTACATTACCGCCCGAGTATCCAATGAAACCACCGAGCATCATCTTACTA
ACTGTAAGCATATAGTCCGGTCTCAAAGCCTTTATCTTTGTATAGTTTTG
CGTTTAGTTTTGACCATGTGATTAACTAATGAACAGAATATAATTGATTT
CCAAGGGAATGATATGCAAAATGATTTTCCACACTATTCCTTTATCATTG
CGGTTATTTTGTTGTAGCCAAATGGGAGATTTGAGATTGGAAAGAAAATC
TGTCTGAGTATGTCAGCGCATCATCCTGAAACATGGCAGCCATCTTGGAG
TAGTAAGTTTTTTCATTAACTTGCATGGTTATTTTGGTTATTAAGTCTTT
TCAAATTAACTGTCAatgaaattacaaaaataaataacttCTAGGATAGC
ATTCGAATAAGATTttatgcttgttgaaaagataatctcGATAGTGATTT
TGGGCCATTCTATTAAATTTCCGTACACGGGGgtagacgaaccttttcaa
gtcaaaaaacatttcttggaaatgtatggataccaactagaaaatgtcaa
aatttgcaaagaaacccttggagaatttcttttcataccttgaAGTGATG
GTAAACAAaccaaaatcagtcttttaccccctggaaattttaaaataatt
ttttatcccctggaaaaatgaaaataacacccttttagaccccctggaaa
ttctgctTCAatcccctggaaatgttcgtccatgCCCCTGTATGGGTATA
AGATGGAATGGCTCATTACGATGTAAAAGATCATTTTCCCTTTGAAATTA
ATATTCCACTTCTTAATTACAGTTCGTACAGTATTACTCGCTTTGATTGG
TTTCATGCCAACACCCGGCGGTGGAGCCATCGGCGCTCTAGATCATACGC
CAGAGGAACGGAAAGTCATGGCTAAAAGGTATGatgattcttaatttttt
atattttgtctttttatacATTATTGCaggtttttccttcaaaattgaaa
ataatttcatagGCGGTTTTAAACCATGTCAAACTTATCAGttgaagaga
tttgtaattgtaatttcattgtcttttaacgagcgttgcgcCCCTTCgta
tgtttccgacgtacttgctctattgtcttaaatccgccagcGAGTTTGGC
GGTTTTGATCCTTCAAAATCTGTCAAAGGTAGCTAAATCGATAAAATACT
AAACTTTACAGTAAATCGAACATTCAGTAAAGACACAAAAACTATTTTCA
TCGGGTGTAGgattgattttcaaaagaatttaacTAACTCGTACATATTT
TAGATCGAAAACCTGGACTTGCGAGGCTTGTGGGAGCAATAACGAAGCAT
CACTTTTAGAAAGTAAGAAAGTGTAggattgattttcaaaaagatttgac
TAACTCGTACATATTTTAGATCGAAAACCTGGACTTGCGAGGCTTGTGGG
AGCAATAACGAAGCATCACTTTTAGAAagtaagattttcatttttccgaT
TCGTCACAAATTGCCCTTTTTAATACTGATAATGATAACCTTagagaact
aattttcgcggaacttGTTTTCGCGGTGCGAAGATACTAAATTAGTGCAT
TTTGTGGAACTAATTATCGTGTTTGACACCCACTTTTTGCcgaaattctt
tcatattcctaggggtttttgagaatttttagtataattatatggttgat
tacatttagcttagatttgtaaaggacgagcggggcgataaatccgtaat
agctccgcttttttgtaatcgccctgatgtaaacaaaaatttctaacaaa
atatcgtacgaaatttttaagccaatcaaaataagagtgtcagtcgaatg
tttttttatagtttcgaatgtttatataagtttcgaaaagaatagcgatt
aagcgttcttcaattctttttttgaccatataattaacgcggaataacat
ggtattctcgggtgattttggattaataacccctcgtttcattgaaaaca
cttcaaaatagccctcactacgttcgtgctattttgaaatgctttcaatg
aacctcggggttattaatcccaaatcaccctctcaaccatgttattacta
gtacaaattacATTTCGCAGAAATAATTTTCGTGGTAGACACAAtaaaac
gcgaaaattagttctgcgaaaattagttcccttgaTTTCTGCATGGTCGG
GGTACACAAAAAATTACTATGAGAAAAACATTGGCTTTACAAGATACATA
TACTGTAAGAAATCAAATACAAGAAGTAACCACTCAACTGTTCCTTTAAA
TTGGACAAATTtttcgtgaaattaaattttacattttcacggatctttta
aaggttttagttttaTGTCTTATATCAGGCCGGTGTCTCCTATTATTATA
TTGTGTTCCATTTGGTGCTAAATAAACaaacaataatttttcttttcctc
tttctgaccaattttgctccacatccatgtcaatgaggcccccagcggta
actctgatcacgatatcacgcaaatCTTTGCCTCCAATGACGATCaatca
aatcagcaaaaaattgaataatcacgcatccctttgaaaaagtctaaATC
ACGTATAACGGCTCAAAAACTTTCGAAATCACGAACACGTTTTGATCCCT
GACcacgcaatcacgaaaaaaaaatttccaaatcacgtaatcacgctaca
aaaaagtccctatcacgttatcacgcaaaccgcttggggggggggggggg
gcccccatttttttttaaaaaaaattttcggccccccccccccccccccg
ggggggggggggggctcgtcAATTCTAtgtcaaaaagcttgtaaacgata
tcactcttatctaaaaacaaaatctttaaaagggCGTTCTATTTACGAAA
ACTacactctttttctttcttttttcttcaggaGATCCAAcgaaagaaaa
ggaagaaactGAAGAAGTAAAAGAACTTGCTTCTCAAATCAATTTCAAGG
TAAcagaaaaaatttccatacacgtgttttttatataagaatattcatat
GGACTTGAAAGAAAGAGATAGATGAACATACAGATGAACAGAACATGtcc
taaagtctgtctcgaaataatttgaagctggagacaaaaatggctgtaac
ttttgatagagttcgaatcaagttgcgattaagtgcttgttaaaatgata
ttcgtgagtggaatattatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAATAT
CATTTTAACAAGCActtaatcgcaacttgattcgaactctatcaaaagtt
acagccatttttgtctccagctgcaaattatttcgagacagactttaggt
aGCGTCATCTCTTCCTTCGTATCGAGCGTAAAACTcatactcttcgggat
atgcgcACTGCCAATCAATTGtcttttaaacattctttttattgtaaatc
tctattgataaacttcttttgtttgaaacttctattgtttaatttattaA
TATGcgaattcccggtgggggtcaatAGTGGCCGCCCATaacagtgccta
tagaccaagagtaaggccaaGAAGGCTGGAGCTGTTGGATaagttggagt
ttttacaagctcttacttgatttggttggtcgttaagctatcataaaaca
attttgttgctttttctaaagatcgcgtcatctctattactttaaatgac
caattagtgaagtatcttataaaaatttcagctcatcccgagctgtctat
tgtgtaggcTAAACAGGCCCTATCCATGACAGCATTCACTATCCAAGGAT
AGCGAAATTACTACGCTCATTTGGCCCTTCCAGCTCGAGTTGCTGGACGC
TGTATCGTAACTATACtaccgggtgtctctgaaaaaacttctcCCTGTTT
GATTCAAgattgcgaaaaagtgaaaaaatatattagcttgattttttcga
aatcgtttagaggagggtttaacttaaattttggtatatcaaactttaaa
attgcttcattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
gttttttcgtcttttttcgctctttttgaaaacaatttttttactctttt
tgtcataacttttgatctaatgaagcaattttaaagtttgatataccaaa
atttaggttaaaccctcctctaaacgatttcgaaaaaatcaagctaatat
attttttcacttcttctcaattttgaatcaaacagggggaagttttttca
gagacacccggtaGAACGACTCGAAAGTACAGCGTATCCTCAGTATAGAA
ACCACACCACAAAGCCAGGCATATCACAGCACCGTGTGTGAATCATTATT
TACTTGTAAAATGTTATTTATCTCATAATaattctcaaaactttcacaaa
aatgccatgaTGCTCCTTGAAGTATGCATTACATGTTGAATTTAGGTTGA
ATTTGGATCCTACTACCGTTgagaagaatattttaagatggtTTTccctc
aaaaagtttagaatatTGGgagattacacgtttttttttttagaaactag
ttttaccaagcagtcTCAAtgtttcctaagaaatcggcctttttagcctt
aaatgtttctaacatgtttctgagcctcatgtttcttaaaagtgtgtttc
ttaaaaaaagaaaaacgtgtatatattaTAATTATTCCAAATTTGTGTTT
CTTAGGGGGAAGATAAAAGTAAACAGTCAGCCGCAACACCAACTCAATCT
CAAACAACGACAACGACGTCACAATCTGCCATAAATAACTCACAACAACA
AGCAGCTGCTGCACAGATGTCTCAAATGTATGCTAACTACAACCAATTCT
ATGGtatgcaacaacaacaacaaaacccTATGTTTGCCAACCAACAATTC
CAACAACCGTCTCAGCAACAAACACCGTCTTCTCAACCCACAACGACCGA
AACTACAACAACTCAATCGTCAGCTCAACCGAATACAGGCTCTACTGAAA
CAACGacaaacgaaaatactgatacGACGAACTTACGACAACGCCGACAA
GGTGCCGACAGTAGCCGCTCTTCTTCTCCGGCAACGACGCCGACACCAAC
ACATAATCAAACACAAGGACAATCAAAGTTAGAAACTGTTTCGTTTTATA
TGTTATGGATTGTATTAGTACCACTGGTACTCTTGATATTGAGACGTTTA
GGAATGGAGAATTCGGGTATGGGAAaacattaataaaaaaaaaggagATG
AACGGTTATTCCAGAAAATAATATTACCTCCTTTGCTGAAaaggatatat
tttttgatGGTTAAACCCTCTGTGTTTTCGTCGAAATTTCAGAGGTATCT
CTTagtttcttcaaaattttagagatttttcttAGACATGTAACGAAATC
CGCCTAGATTTTAAAGGATTTTCGGCTACCTCTCCCTCATGGACGGAAAA
AACAATCTCCTCAACATGCAAGGGGAAGAACAATTTTTTGCTAAGAGGTT
TTGATTGTGATAATTGCCAATATTTAACAGCGTTTCATTCTTAAAAAATG
ATTTGTCTGAGatattaaaaacgaatgataagATGTCAAGAAGATGAAAA
TACCTTAAAAGGGGGTCTGACACTTGAAGGGCTAACATTCTTTCGTATTT
TTTTGTACGTTGTACGAAAAAATACGATTCATAGTAGACAAAAGACTTGG
CTATGGAAGCTGCTCGGaaagctaatatattttttaacaGTATTTTCGTG
GGCGTTCTTTGAAGTCTTAAGTTTATAAggaatactttaggcgtacaaac
tctcgcgagcagaaactttcgcgattttcacgtattttggccctttttgc
gaaagcaaatgtctttaaaaattctaggaagggccatttgcgaaagttta
tactcgcgaaaaattcttgacaaaatagaaaatctttaaaacttcaagct
ttgaataaaatgtaacttttatggcactttttagccttaaagactaataa
gtcaaaggaaaaatgtttcaagccaatccaagaagtatttgtccctctaa
gccattttgtcatgtgaaaattctcaattttacgtcttgattcgcgaaag
tttatgctcgcGAAAGTTTGTACGCCTAAAGTATAACGCCGTTACTATGT
GAATAAATAATACGCTGCAATTCTTTTGGGTAATGGGCTCTTCCAGAAGA
TGTCCGTACATGGGGTGGATGATAAAGTGTCCGGGGGTAGTGAAAAATCT
ACAAAATTTGTCTTGTCCGGGGGGTAAACTTGCTCTGTTTGGCGGTAATT
TTGCTCTGTTTGAGGGTAAATTTGATTGTCCATGGGGTCAACTGATGCTT
CTCCGAGGGGTTAGACCTGCTGTTCGGGGGTATAATTTCTATTGACCTTA
TCAGAGTTTTTGATTTTTCTAAAAATGCGATGCATTGTGGGATTGTTTTG
AGTGTATTACAATAGAATTCCcttgaggaattcctaagagatttctattg
taatacactcgaaacaatcccacaatgcatcgcttttttagaaaaatcaa
aaactccgataagatttATTCTAAAGGAGACTTGGGGCGAAAATAACAAa
ttgtagtgtttccggaatgccgGTGAGGGAAAAAGCTCTCATGTGGCCGG
CCGGtaatgaattattttttgctatttttgataacttatgatcattgaaa
aataactttaaagataacttttatgtacaaataGTATGAATTAAGCCCTG
AATACCAATGTATCAACTATgctaacgaacaaaacttgatttacaagcgg
gaatatctaaccaaacgacatttgatagcttgaacggtcaaaTTGATTTT
CTATATAATGGAccatgaacccatagtctgtggccgggtcagaatttttt
ttttcacccggctggtttccggaaacactacatttttttttattttcgac
tgacaattcaatttttctaaataccCTGGGTCTCAGTAAAGCCCAAATGA
AGTTCGAGTGATTTTAACATGATCTTTAAGCAGATTCCAATCTCCGTGCA
TGGCACATGTCACTCTAAAGACCATGGCTCCGTAAGAAAATTTACCTAGT
ATCTTTTTCATTCAGATTTGGGTTGAATATGAAATGAGTTTTTGAGCGCA
CTGATTGGCTAAATATCCCTTTGTATTTGCCATATCCCTTTGTATTTGCC
ATATCCATTTAAAACActaaaaaattttgattgtgaTAATTGCCAATATT
TAACAGCGTTTCATTCTTAAAAAATGATTTGTCTGAGatattaaaaacga
atgataagATGTCAAGAAGATGAAAATACCTTAAAAGGGGGTCTGACACT
TGAAGGGCTAACATTCTTTCGTATTTTTTTGTACGTTGTACGAAAAAATA
CGATTCATAGTAGACAAAAGACTTGGCTATGGAAGCTGCTCGGaaagcta
atatattttttaacaGTATTTTCGTGGGCGTTCTTTGAAGTCTTAAGTTT
ATAAggaatactttaggcgtacaaactctcgcgagcagaaactttcgcga
ttttcacgtattttggccctttttgcgaaagcaaatgtctttaaaaattc
taggaagggccatttgcgaaagtttatactcgcgaaaaattcttgacaaa
atagaaaatctttaaaacttcaagctttgaataaaatgtaacttttatgg
cactttttagccttaaagactaataagtcaaaggaaaaatgtttcaagcc
aatccaagaagtatttgtccctctaagccattttgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038339XLOC_038339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061106-exon-scaffold_354-1491911889:955020..955228TCONS_00061106-exon-scaffold_354-1491911889:955020..955228Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:955020..955228TCONS_00061106-exon-scaffold_354-1510915933:955020..955228Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:955020..955228TCONS_00061106-exon-scaffold_354-1575043694:955020..955228Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:955649..955722TCONS_00061106-exon-scaffold_354-1491911889:955649..955722Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:955649..955722TCONS_00061106-exon-scaffold_354-1510915933:955649..955722Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:955649..955722TCONS_00061106-exon-scaffold_354-1575043694:955649..955722Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:956041..956172TCONS_00061106-exon-scaffold_354-1491911889:956041..956172Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:956041..956172TCONS_00061106-exon-scaffold_354-1510915933:956041..956172Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:956041..956172TCONS_00061106-exon-scaffold_354-1575043694:956041..956172Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:956337..956421TCONS_00061106-exon-scaffold_354-1491911889:956337..956421Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:956337..956421TCONS_00061106-exon-scaffold_354-1510915933:956337..956421Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:956337..956421TCONS_00061106-exon-scaffold_354-1575043694:956337..956421Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:956942..957047TCONS_00061106-exon-scaffold_354-1491911889:956942..957047Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:956942..957047TCONS_00061106-exon-scaffold_354-1510915933:956942..957047Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:956942..957047TCONS_00061106-exon-scaffold_354-1575043694:956942..957047Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:957539..957597TCONS_00061106-exon-scaffold_354-1491911889:957539..957597Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:957539..957597TCONS_00061106-exon-scaffold_354-1510915933:957539..957597Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:957539..957597TCONS_00061106-exon-scaffold_354-1575043694:957539..957597Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:959051..959118TCONS_00061106-exon-scaffold_354-1491911889:959051..959118Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:959051..959118TCONS_00061106-exon-scaffold_354-1510915933:959051..959118Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:959051..959118TCONS_00061106-exon-scaffold_354-1575043694:959051..959118Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1491911889:961825..964906TCONS_00061106-exon-scaffold_354-1491911889:961825..964906Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1510915933:961825..964906TCONS_00061106-exon-scaffold_354-1510915933:961825..964906Clytia hemisphaericaexon
TCONS_00061106-exon-scaffold_354-1575043694:961825..964906TCONS_00061106-exon-scaffold_354-1575043694:961825..964906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:955020..964906 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.23689	5.91897	2.02841	1.49007	3.82619	2.98674	8.45058	9.06528	3.89495	5.77162	3.54261	2.22114	3.87606	3.40616	3.764	4.47134	5.43621	5.21174	3.25326	3.83956	4.04304	4.27354	6.18559	6.09951	3.99204	4.29804	3.95874	3.57205	5.36523	5.48028
Blast
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BLAST of TCONS_00061106 vs. Swiss-Prot (Human)
Match: UB2J1 (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 8.826e-84
Identity = 132/188 (70.21%), Postives = 155/188 (82.45%), Query Frame = 2 
Query:  179 LAKKYNLKSPAVKRLMREAAELSEPTDQYFAQPLDDNLFEWHFTVRGPPDTEFDDGRYHGRITLPPEYPMKPPSIILLTPNGRFEIGKKICLSMSAHHPETWQPSWSIRTVLLALIGFMPTPGGGAIGALDHTPEERKVMAKRSKTWTCEACGSNNEASLLE-RDPXXXXXXXXXXXXLASQINFKGE 739
            +  +YNLKSPAVKRLM+EAAEL +PTD Y AQPL+DNLFEWHFTVRGPPD++FD G YHGRI LPPEYPMKPPSIILLT NGRFE+GKKICLS+S HHPETWQPSWSIRT LLA+IGFMPT G GAIG+LD+TPEER+ +AK+S+ + CE CGS  +  LL  +  +   +  +E KELA QI+FK E
Sbjct:    1 METRYNLKSPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAKELARQISFKAE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00061106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UB2J18.826e-8470.21Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
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