TCONS_00061103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061103
Unique NameTCONS_00061103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061103 ID=TCONS_00061103|Name=TCONS_00061103|organism=Clytia hemisphaerica|type=transcript|length=939bp
GTCAAAGCATGTGTTGGTGGTGAAAGAGACCCGATGAACTTGTTTGCATA
CGGTGACCAAGATGGAAAATCAGTTGATGCCAAGCTTCAACATCCGTTAG
CTGTGGTGTATGATCAACAAGATGATGTCGTTTATGTGGCTGACTCATAC
AATCACAAGatcAAGAAAATTGAAGCAAGCAAAAATACGTGCAGCACTTT
AACAATACGTGGTGGAGTAGGCTCGACTGATGGCCAAATGGCTGAGTGTC
AATTCAATGAACCGGGCGGTCTCGCCCTACACCCTCATAAACGCCTGCTA
TATGTGGCGGACACTAATAATCATCGTATAAGAGTTATTGACTTGGAAAA
GAATACCTGCACAACGCTACCACTCATTGAGAGTGATTCCAAAGATTCGC
CAGTTCCTTTAGAATTCAAAGCGTTGGTCAACATTCAACGAAATCCACCC
ACAGTACTGGAGAAAATCACCAGAGATTTGAGCAGTGTTGTATCTGCACG
TGTTCAACTTGTCTTTCCTGAACATTTGCATTTTACTGAAGGTGTCAATA
GCAAAGTTCAACTTAGTTTATCGGACATGGATGGCGAGGTCATCAGTTTC
GAATCAGGAGAGATCGAACgagaaaagaaaactttcgGATGTAACCTATC
AACCCATCACGCCAACAAAGACTTGTTATTGAAGgtTGAAATGATCCTTT
ATGTATGCATTGGTGAATCTTGTATGATGAAATCTTACGTCATCCAACAA
CACGTGACCCATGACGTCACTACCACTAATGACATCATCGAAATTGAGCA
TCAAGTTGTGGTATGAAATGCCATGATAAGTTAAAATACAAGTTTGGGCG
AGACGGTAGTAAACTTTAAGTAGATTTTAAGTTTAATTATTTATAAATTG
CGTCTTTCTATGTttcatatcagcttttttatcaACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_354:883935..899246+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061103 ID=TCONS_00061103|Name=TCONS_00061103|organism=Clytia hemisphaerica|type=transcript|length=15312bp|location=Sequence derived from alignment at scaffold_354:883935..899246+ (Clytia hemisphaerica)
GTCAAAGCATGTGTTGGTGGTGAAAGAGACCCGATGGTAAGATGTCTTTG
TTATGCAAAATAGGATAGCCTTCTCTTTTTGGAGATAAGATCTTTGATTG
ATAAATAAGTAAGTTTGCGCCCGTAGACGAGACAACCCCGAACACTCTCT
TTCtttagctgtctacccgaatgCTATGCCCTAAGATATTATTGGAAACT
TATGTTGacaattttggttattttaacgtttttcagaatttaaaactCGG
ACGAGTATTGCTATTTCAGTACTTCCAATTgatttcattggatttttcga
tttgggaggggtagCGGCTTCCAGACTATATTCttagccttattggaaca
tttttaagcttttagGTACTGAGATCCTAAGGCCctaaaactcagagtta
caATCGcacttcaaagcacttaaaaacCACTTTCGGtttcaaaattctaa
aacaAATTCCATTGAGTGCCAAATATTACGTTTGGCATTGTAGCTGTCTA
CGACGTCTCATAAATCACCTGCTAATTTTTTCCTGTCTCTCTAGATCTCT
CAAATTACCCTAGACAATCAATACCCTTTGGTTAATATTGAATTTTTGTC
AAACAATACAATATTTTGTAAGAAATATTACAGAAATATTACatactagc
cgtcccggcgtcgtccgagacgactttttactccttttaatacgctcgct
tcgctcgcttttctatttttcagaaacttgtagggatttgtatacaaatg
tacttattttgcgagaagaaatgttcttaaatttNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaatgggagagttccgatttaagcgtattataatatag
atgtTCACCCCCCCCTCATTTAATCCCCTTTAAGGGGGAGTTAAGGTAAT
TAGGACACCCGACATTTGATTTATTTGCTTTAgaaaatgtttctcttttt
ttcctaGAACTTGTTTGCATACGGTGACCAAGATGGAAAATCAGTTGATG
CCAAGCTTCAACATCCGTTAGCTGTGGTGTATGATCAACAAGATGATGTC
GTTTATGTGGCTGACTCATACAATCACAAGGTTtgaccacacccataccc
ataCTCCTGTCTAGACCATACCCATACTccttagtctgaatcgcagacct
ctacaaaaccctataaggagcacgaatccgttagtggatgcaagCAGCCT
ACATACTCCTGTCTAGACTGTTAGAATCGCTTTAATAGCATATTCAtgta
ctagccggtacccggcgtcgcacgccggttaagctgtagctgaacgcact
aaaagtccttttgatgttgaagctggcttaaaaaagcgatcgaaaaaaaa
gaagaaatctctacaacgtttaactctaaccttccccgggtgtcttatct
tttaaccatatttggatcatGTACTGCCCCCCCCCGTgacatttaatttt
ttgtttaagtcaaaagttataaaaaagcATCGTTTACTggggcccccccc
agcggtttgcgtgaatgcgtgaatgggcttttttggttgcgtgaatgcgt
gaaaatcgaaaaaaaattgcgtgaatgcgNNNNNNNNNNNNNNNNNNNNN
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CCAatggaacaaatttgtggagcaagagactaaaagtcataattttaaaa
cacaaacaaagcgaaaacgaaagtgacacacagacacacaaagcaccgct
aatAATAAATAGATGTCTATTTTCCTGCGATGGAGATGGTTGATTTTTct
agatcctgattgactgTGGACGAAGCTCAATCAGCACGGTCATAACTGCG
AGTTATGccaaatcgcttcagttacACCGCCGCCCTCAAAAGTGTAAATA
CATGAACTCGCTAATAATGTATTTAGCGGctgtttccttaactcgaacag
atTTTCTCCACCTTTCAGTTAGCAATACCTTATAAACCTCACTCTATATC
TCGATATTTACTTTAcgaatttgtgttccccgtgcgtgctTGAGCTATGG
AGGCCCAACTGTAATTTTTTGTTGCAATGTAACAAGAACTATTCCAGGCT
TGTTTTTCATACAAACCACTAAATCTTGGCTGAGCTTGaggttgttctta
aatttccaTTGCTCCAGACAATAGAGTCATTGTTCTGAGGGCctaaataa
aattgttcttataaataaaaactgTGTATTTCAGGGATACACGCATCATA
ATTCCCTGTCTTTTGCCAAATAAAAGGGTGCCAATAAAGGTGTCGACGAA
GATTGTTGGCTTTACAGAATGGATAGAATAAAACTTAATGAATCAAcaat
ttacatgttttttataaggattcaaaaattcaaaatcggGCTCGGGGATA
CTTAGATCGAGAGATAAACAAGGCTTAAAATGCTTGAAGGATGCTTATAT
TCTAAGCTAAATTATAGGGGAATCCAGAAAATCCGAGAAAACCCAGACAA
AATCGGAAAGTATAGGCTCGTATAATGCTTAGCGTATGCTTAAATAtttg
ccatatctgagcctgatatgcttataagtgcaatgcttataaaaaaacac
atatattttagaaaattgatAATCATCAAAGAATATGTATTTGCCAAGTA
CATTTcctctttctttatttttagatcAAGAAAATTGAAGCAAGCAAAAA
TACGTGCAGCACTTTAACAATACGTGGTGGAGTAGGCTCGACTGATGGCC
AAATGGCTGAGTGTCAATTCAATGAACCGGGCGGTCTCGCCCTACACCCT
CATAAACGCCTGCTATATGTGGCGGACACTAATAATCATCGTATAAGAGT
TATTGACTTGGAAAAGAATACCTGCACAACGGTACGTTTATGATATCACT
TGCTAATTGGTCATTGAAATTTAGATTATTTTATACTAGATCCTAGCGTG
TGAAAGTGTTTCTTAGTTCAACCTGTTCttactcttctgtgcttaatttT
ACGGGACGTTTTCCTGTTTCTTTCAACTTTAACTATTTTTTTTACCTCAG
AAATgccctattcatgatatgcaacactggagagtcttccaagaattttt
ttaaaatctcaacccaatacgtcactttttctattgtttaagtgacgtat
tgggtggaagaTTTCTCATTTCTCaattaaaagttctcagaagattctcc
aatggtgcatatcatgaatttcaaaaatttggaNAGTTCTCAGGAAACTC
tccaatggtgcatatcatgaatttcaaAAGTTTGGAATTTCTTTATAAAC
TAAACAGCCTCAATAAGAGCAATACTTTAAGGCACTTATTACCCCTCCTA
CTACCccagaaatatttttgtctcACCCCTGCACATTAACAAGATGATGA
CGTCAAAATTCTTTGTCTGCATAAGGatgtcaatgcaacgacttcagaca
ttttgacgtcattcccTCCTGGTAAATTCGAACCCAGTCTCCTCACGCTT
TGAGGGTTGATAGGTGTGTTAACTTTGAGTTTTAATACAAAGAGTTTCTC
TATACTGTTTCATTAAAACTGTTAAGTCTCAAACTTGTTAATAATAGTAT
TTCCTATTTTCAGCTACCACTCATTGAGAGTGATTCCAAAGATTCGCCAG
TTCCTTTAGAATTCAAAGCGTTGGTCAACATTCAACGAAATCCACCCACA
GTACTGGAGAAAATCACCAGAGATTTGAGCAGTGTTGTATCTGCACGTGT
TCAACTTGTCTTTCCTGAACATTTGCATTTTACTGAAGGTGTCAATAGCA
AAGTTCAACTTAGTTTATCGGACATGGGTAAGTGAGAGTTACACGGTTGA
ATGAAAAGCTGGCGCGTTTAAAATCTTTTCTCATCCATCTACCTGAGCCA
ACCTTCCATGGTTACAAACATCCCAAGTCTAATGAAAAACGATCTTTCCA
CTAGTCATTTATCGACGTCCCATATTTTAACCTgccttttggacctaccc
cggtggaggtcctataaattaacctttgtccgttcgtccgttcgttcgtt
attagctttcctcatgattggctcattagttttttctgattttttgcaca
aagatgcataactataaaccctcgaatgtgacggagcccgattttcaaaa
aaaaaaattggggacaaatttgggccaaaaaacggctaaaaaacgggttt
tttggacttagttagacttaggtcgttaattttttctgattttttgcatg
aaagtagggtaccatcgtaggtaaaagatggcttaagcggatttttgcaa
aaaaaatttttaggctaaaaaaacgcatgtttatctataagaatcactat
taataagcatacatcaatgttcttagtcaaattactcaatttttttatga
gatagaagttttcttttgctcaggagggcttacttttaaaaaatatgtgt
gtttagaccacagatctgtaaagcccgaagggctagatttgcggccttgg
tcaaaaagtgaagctcatctttggaaggatttcctaccagagtcccgtga
ctaaaatatgcaatttcaccggtttgagagatgtgaaatagcgtttgccg
cctacttttttttatctcgcgctccgaaaacaattaaaatNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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aacaattaaaatgctagatcctatccatcggcacgaaatttaaaaagtca
aatttttgcttcacttttttttgctcgagaaagcttaaagttgcctatct
agcccttcgggcttcacagatatctgtggtttagacatgaaattttggtt
gcttggcgtgtttttataggaaaactggccaaattcgatatctATTTATT
attagcggtgctttgtgtgtctgtgtgtcactttcgttttcgctttgttt
gtgttttaaaattatgacttttagtctcttgctccacaaatttgttccat
TGGATTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gggcaaatttcagctaaaaaacggctaaaaaaagggttttttggactttg
tgaaatattggatcattgtttttttctgactttttgcatgaaagtaggta
aaagacggctcaagcagatttttgtaaaaaaagaatttttcagctcaaaa
aacgcatctttatctataagaatcactaagcatacatcaatgttcttaaa
attactgaattttttgatgagatatgttttatgctctcgaagtcttgaat
atgaaagaatatttcaagagcatgaaatttttgtttctaaaCGTTTTAAG
AAACTAGGTCAGCGTGTTTCAAACACACTGTTGGCGATCGCTTATTCCCG
ACAAAATCATCGGAGAAAGAACCTTCTGTAGCGTTCACTAAGAGATTAAT
TTTCACTTTGTCCATTTTTTCGTTTAGTCGTAGAAGGGCAAGGTTGATGG
CTTATTACTTTACACCCTGCGATGCGGATCTGTCTCTGATAAATTATGGC
AAGATTAGAGCAGCTAGACGAAATTACAAAGTCGAGTAAAATGGTCGAGT
GAACTTTACCTTTTTAAAAGCTACTTTAACGTTGTTTTACTTCAAAGACC
ttgcaatttcaattcagtacaCTTATTTCACTATCAAAATCgttgtagta
aaaaacaaaatgtttacgcatgcgttttaaaacaGCTGTGAAATTATTGT
CTCGCTTAACGAAGTAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAATGAACATGGATAAATGAGACGAACATTGAAA
TGATAGgggaatgacgtcataaacaataCAAAAATGATGAATACAATAGA
CTACTTAACAGGCAGGGataacttcaaattagcctatcatctcGGAATAT
CagctgattagcctatcataggctatttagcctaTTTCATACAGGCTAAT
TAGCccataatgaagaaaaattagatttttgagccaaatacTAATAGTCG
CATTCTATAAATCCTCAGATTAATCTCTAATCACTCAATTAATGTATATT
CCAAATATCATCCCTTAATCAGCTCCAGAATaggagatattcaatttttt
ctgacTGCGCATGCGCCGAGCATGCGCAGTATAAAAACTTCGACATTTTT
CGCGGAAAAAtttgttaaatgtttttttttttttttgcacacggtacaag
atcagaaaattagcctattATCAGTTATTTAGCCTATCAGCTAGTTTTTT
TAAAATACATCTTTTCTGGGAGCTGATANNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtcttttttatttttcctccaATTTA
GCGCGCCTTTACAAAGTTTTTCCTCTAATTATTAGTACGATAAAAAGATT
CCAGATTCAGAGCAATTTATATCCTCCTATTATTAGTGCGACAcctccaa
aataattatttttttggtcgtattaaattagagaaattacggtAATTAGC
CTGTATGAAAtaggctaaatagcctatgataggctaatcagcctatgata
ggctaatttgaagttatCCCTGCCTGCTTAAGGCTGTTATACATTTTATT
TGATCTGCAACTTTTGCCATTATTAGTCAGTACATAACACATGATCAAAG
CAAAAGTAAAGCGTAGACCCTAGAGAAAAAAGTTACACTTTGAGGAAGGG
GATGGGATATAGcctgaaaaaaatttaacatctctcctattcagacaaaa
tgtaaggaaactaatgagtttataaaggtaagcgagtcaaacatttactt
tcgatttcaaaaacgagATTTGACTTGTATATTTACACTGTTAAAATCGC
CCTCAGGCGATcgacaaacgactaattttaatagatcgtcactatttgtg
ttctgaatgattgtttaatggtcacgcttatgtagatatcaattacataa
agattaagaaacgttgtatttcttttcaatacttaaagtttcttgctttc
gcattcatcagttgattagaaataactatcaaaacaaaattccaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCGATTGAACAGCTTGTGGTATTTATG
ATGACGAGGAAAGTGTTTGTCGATCAACTTCAAGAACTTTTGTGCGATAT
TTGTTTCGACCGATTTGCTGAAGggagatatcaattatatatgtgttaaa
tgcataaccaggtaggtccataaaagtatcacttgttctaaTTAAGAATA
AAAATGGACAGAAACAAAGTTTGCTGTCTAAAGTAATGCATTGCCCTCTA
TTGACATCAGTGTAATGTAAACTTCTTGCAAAGACTATAGCTGCCAATTT
TCTGCCCACTTTtgaagtcggccgtctaaacttaTTTCAAGCCTTTTAAG
GATATGTTGCTCAACTTTAAAATTTGCAAGTGGCGCTTTATATTTCTGAC
TTCGGTGTCTTATCTTCATAGAATTTTTAACTCGCAACACAGAAACCACT
AATAACTTGCTACTACTCGCATATTgttaattgaaatattttccagCCCA
ATTAACAAGTAGTAGGTGATTATCAGTACGAAATTTGCCCAATTTAGATG
GCGAGGTCATCAGTTTCGAATCAGGAGAGATCGAACgagaaaagaaaact
ttcgGATGTAACCTATCAACCCATCACGCCAACAAAGACTTGTTATTGAA
GGTATGACCCATTGGATCTACCTATccatcatatttttcttttaattcac
TGTATCACCATATCACAGTTTTGTTCAAAGTGTATCCAGATATAGTGGGg
tgcgtacggtatttcggaattgcggaaatcgacctttttttctttgaaat
ttggaaattggGCAAAATtctttcggtatttcggaattctgaaattgttt
cggtatcggaaatcagtgaatttttacttcaaaatttccgtattataaag
tttttatccccctttttcggaactcatacatgaaaaatcaaatttgacga
aaaattagtcaaaacaacgaggaaaaatacccaaagaAAATGGTAtcgaa
attgcaagtatttttttacggaatttcggaaattctggcaaaattattcg
TCGGAAATTGCAAACCCCGTACGCAAGAAtgcttttgatagtcaaatata
attgcgaaaatctttttgtttacagtaagtgaatcaaaagcgctatattt
gaataNAAAATTATTcgtcggaaatcgcaaaccccgtacgcaagaatgcc
tgtaacttttgatagtcaaatataattgcgaaaatcttttttacttGTTT
ACAGTAAGAGAATCAatagcgctatatttgaatgagGCCCCCctccccag
cggacccaaaattcacatcacgccaatttttttcgatttcacgccatcac
gcctgaaaaatttgattttcctgatcacgccaatttttttcgatttcaca
ccattacgcctagaaaatttagttttcgcGCTCATATTCTCTGGATAAAT
TCAGTTTTAGACCACATTTAGACCCATTGGTATGGATAAAATGCCGttat
ataaacttaattttCGCCCACAAATAGGTGTGTGTTTggtcgtcaatcag
tttttcggcTTTTACATACGCGTCAGATTATATAGTCAAGATTATATAAT
TTTTCCTACCGGAAACACCTGATAAACCTGGAAGGAATttgacctctgtt
tttctatttttagtaatacaaAGGGGTCAAATTCtagttttttcgggtgt
ttccgataggaaaaatgacgtgatcttgacttatgcatatcaaaaatagt
tttacaaCTGTtgggtcacatcaaagggcttgagggctgaggtatatttg
acTAAATCgacaaagcccaccatggttgggcagcgaagaaaatttttgaa
ttttgtagGCTTCAAAGTGCTATcttaggacccatttcaattcaatttga
aaaataattcatgtaaaaatctttcaaaagtaCAACGGGAGTGcaccgac
gggagaaattttcaatttagtatggctgcaatcgccctcatttactcttt
ttttccaaaatatggtttaaacatcacGAGGATTCTTTTGATCAATACCA
ATCTGCtcaaaattacacctcataataaacctgttgcttttTCTGTTTGA
GGCTTTGCtgcaaatatatattttccttaAATAAAGGACCCGATGTCTTT
GATGCATctaagaataagcatctaagaaagagttagttacggaggaagcg
caatcatggtttgcgccgacggaaaaaattttaatttttgactcTCTCAT
AGCAttcaactttattttgaagaatagcaactgctaaagacaattgaaag
ttacaaggataaatggcagatgaatgAAACTatttgcaccgtttctttta
tgttttgaaattaGATCTAATAATCTAACTCGACTTCACGAccacgccgt
ttttttcaaaatttcacgccaggGCTCTTGAAtgcactttttaataaaaa
acgtTCTTAATTGCggtaattcttttatttttcaaccttAAATTAGAACA
GACTTGTTCGCCTTGAGAGAGTCAATTTTTATAACCGAAGGTAATTCTAT
ACATCCAAGTGAATTATTAAAgacaataagaacattttaggctcaaaatt
gTCATAAAAATAAGCACAGCCCAGGCTTACCCCAAATTAAGACGTtctaa
aaaaagtgtgtagtgCGTctgcaaaaataattttttcaatgttttttttt
caaacaggtTGAAATGATCCTTTATGTATGCATTGGTGAATCTTGTATGA
TGAAATCTTACGTCATCCAACAACACGTGACCCATGACGTCACTACCACT
AATGACATCATCGAAATTGAGCATCAAGTTGTGGTATGAAATGCCATGAT
AAGTTAAAATACAAGTTTGGGCGAGACGGTAGTAAACTTTAAGTAGATTT
TAAGTTTAATTATTTATAAATTGCGTCTTTCTATGTttcatatcagcttt
tttatcaACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038337XLOC_038337Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061103-exon-scaffold_354-1491911889:883935..883970TCONS_00061103-exon-scaffold_354-1491911889:883935..883970Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1510915933:883935..883970TCONS_00061103-exon-scaffold_354-1510915933:883935..883970Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1575043694:883935..883970TCONS_00061103-exon-scaffold_354-1575043694:883935..883970Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1491911889:885492..885614TCONS_00061103-exon-scaffold_354-1491911889:885492..885614Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1510915933:885492..885614TCONS_00061103-exon-scaffold_354-1510915933:885492..885614Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1575043694:885492..885614TCONS_00061103-exon-scaffold_354-1575043694:885492..885614Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1491911889:888709..888915TCONS_00061103-exon-scaffold_354-1491911889:888709..888915Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1510915933:888709..888915TCONS_00061103-exon-scaffold_354-1510915933:888709..888915Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1575043694:888709..888915TCONS_00061103-exon-scaffold_354-1575043694:888709..888915Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1491911889:889648..889861TCONS_00061103-exon-scaffold_354-1491911889:889648..889861Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1510915933:889648..889861TCONS_00061103-exon-scaffold_354-1510915933:889648..889861Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1575043694:889648..889861TCONS_00061103-exon-scaffold_354-1575043694:889648..889861Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1491911889:896832..896935TCONS_00061103-exon-scaffold_354-1491911889:896832..896935Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1510915933:896832..896935TCONS_00061103-exon-scaffold_354-1510915933:896832..896935Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1575043694:896832..896935TCONS_00061103-exon-scaffold_354-1575043694:896832..896935Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1491911889:898992..899246TCONS_00061103-exon-scaffold_354-1491911889:898992..899246Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1510915933:898992..899246TCONS_00061103-exon-scaffold_354-1510915933:898992..899246Clytia hemisphaericaexon
TCONS_00061103-exon-scaffold_354-1575043694:898992..899246TCONS_00061103-exon-scaffold_354-1575043694:898992..899246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:883935..899246 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.55071	3.96298	6.56947	5.31225	0	1.15045	3.0987	1.56566	2.32139	1.47846	4.07487	1.70519	1.77192	3.34858	1.75228	4.25704	3.18539	2.83424	2.6355	3.82342	0	0.395955	4.90212	2.97465	0.0921115	1.35595	1.06991	1.54747	2.13275	1.96485
Blast
[Close]
BLAST of TCONS_00061103 vs. Swiss-Prot (Human)
Match: NHLC2 (NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.920e-40
Identity = 104/283 (36.75%), Postives = 157/283 (55.48%), Query Frame = 1 
Query:    1 VKACVGGERDPMNLFAYGDQDGKSVDAKLQHPLXXXXXXXXXXXXXXXSYNHKIKKIEASKNTCSTLTIRGGVGS-TDGQMAECQFNEPGGLALHPHKRLLYVADTNNHRIRVIDLEKNTCTTLPLIESDSK--DSPVPLEF-KALVNIQRNPPTV-LEKITRDLSSVVSARVQLVFPEHLHFTEGVNSKVQLSLSD----MDGEVISFESGEIER--EKKTFGCNLSTHHANKDLLLKVEMILYVCIGES--CMMKSYVIQQHVTHDVTTTNDIIEIEHQVV 810
            VK  VGGERDPMNLFA+GD DG  ++AKLQHPL V +D++ +++YVADSYNHKIK ++     C+TL   G   + T     E  FNEPGGL +  +  LLYVADTNNH+I+V+DLE    + LP+  S++   D P  +E  K L  + ++ P++ L  +T      +  +++L  P     TEGV+S   L+       + G++    +G+IE    + T    +     + + ++ V + LY C  +S  CMMK+ +  Q +    T    I  +E + V
Sbjct:  446 VKHLVGGERDPMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTNNVTSSSFTESTFNEPGGLCIGENGELLYVADTNNHQIKVMDLETKMVSVLPIFRSENAVVDGPFLVEKQKTLPKLPKSAPSIRLSPVTACAGQTLQFKLRLDLPSGSKLTEGVSSCWFLTAEGNEWLLQGQI---AAGDIENISSQPTISLQIPDDCLSLEAIVSVSVFLYYCSADSSACMMKAILFSQPLQITDTQQGCIAPVELRYV 725
The following BLAST results are available for this feature:
BLAST of TCONS_00061103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NHLC28.920e-4036.75NHL repeat-containing protein 2 OS=Homo sapiens GN... [more]
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