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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061102 ID=TCONS_00061102|Name=TCONS_00061102|organism=Clytia hemisphaerica|type=transcript|length=2389bpRun BLAST on NCBI protein sequence of TCONS_00061102-protein >TCONS_00061102-protein ID=TCONS_00061102-protein|Name=TCONS_00061102-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp MYIAAAGTHQIWSYFLEDGSWLKKGSQTERTCIRFAGSGNEENRNNSYPHRun BLAST on NCBI transcript from alignment at scaffold_354:854889..899246+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061102 ID=TCONS_00061102|Name=TCONS_00061102|organism=Clytia hemisphaerica|type=transcript|length=44358bp|location=Sequence derived from alignment at scaffold_354:854889..899246+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:854889..899246+ >TCONS_00061102 ID=TCONS_00061102|Name=TCONS_00061102|organism=Clytia hemisphaerica|type=CDS|length=7602bp|location=Sequence derived from alignment at scaffold_354:854889..899246+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061102 vs. Swiss-Prot (Human)
Match: NHLC2 (NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 1.686e-105 Identity = 215/497 (43.26%), Postives = 297/497 (59.76%), Query Frame = 2
Query: 809 HFAVSNTGNHNILLFDDTGIVYSKIGTGTPGFVDGSSAHAQFNAPQGLSWHGDDIYVADTENHAIRKIDAXXXXXXXXXXXXXXXDDKEGGKSGTEQELSSPWDVEFASAPGVDQDKEEGPKNCMYIAAAGTHQIWSYFLEDGSWLKKGSQTERTCIRFAGSGNEENRNNSYPHKASFAQPSHLSLGKVKGQNVLFVADSESSSVRTVELKSGAVKACVGGERDPMNLFAYGDQDGKSVDAKLQHPLXXXXXXXXXXXXXXXSYNHKIKKIEASKNTCSTLTIRGGVGS-TDGQMAECQFNEPGGLALHPHKRLLYVADTNNHRIRVIDLEKNTCTTLPLIESDSK--DSPVPLEF-KALVNIQRNPPTV-LEKITRDLSSVVSARVQLVFPEHLHFTEGVNSKVQLSLSD----MDGEVISFESGEIER--EKKTFGCNLSTHHANKDLLLKVEMILYVCIGES--CMMKSYVIQQHVTHDVTTTNDIIEIEHQVV 2260
+++TG+H IL+ G + IG PG DG + + FN+PQG++ + IYVADTENH IRKID V+T+ G G+QG DKEGG G +Q +SSPWDV F ++ E + ++IA AGTHQIW+ L+ G KK T+ TC+RFAGSGNEENRNN+YPHKA FAQPS LSL + LFVADSESS+VRTV LK GAVK VGGERDPMNLFA+GD DG ++AKLQHPL V +D++ +++YVADSYNHKIK ++ C+TL G + T E FNEPGGL + + LLYVADTNNH+I+V+DLE + LP+ S++ D P +E K L + ++ P++ L +T + +++L P TEGV+S L+ + G++ +G+IE + T + + + ++ V + LY C +S CMMK+ + Q + T I +E + V
Sbjct: 237 RLVIADTGHHRILVVWKNGQIQYSIGGPNPGRKDGIFSESTFNSPQGVAIMNNIIYVADTENHLIRKIDLEAEKVSTVAGIGIQGTDKEGGAKGEQQPISSPWDVVFGTS-----GSEVQRGDILWIAMAGTHQIWALLLDSGKLPKKNELTKGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASEDPWSCLFVADSESSTVRTVSLKDGAVKHLVGGERDPMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTGDTNNVTSSSFTESTFNEPGGLCIGENGELLYVADTNNHQIKVMDLETKMVSVLPIFRSENAVVDGPFLVEKQKTLPKLPKSAPSIRLSPVTACAGQTLQFKLRLDLPSGSKLTEGVSSCWFLTAEGNEWLLQGQI---AAGDIENISSQPTISLQIPDDCLSLEAIVSVSVFLYYCSADSSACMMKAILFSQPLQITDTQQGCIAPVELRYV 725 HSP 2 Score: 236.884 bits (603), Expect = 1.621e-66 Identity = 116/241 (48.13%), Postives = 160/241 (66.39%), Query Frame = 1
Query: 82 SMEYLAKIAESPNKFEELTLQFITNRES--DNLKVPEFSDKYEWLNTSDKLSFDGNLKKKLCVLDFFTYCCINCMHVLPQLHELESKHTIEDGLAVIGVHSAKFPNEKVVDNILSAVLRYDISHPVLNDGEAELWNAMSIRCWPTFVIVSPEGIPLLYLVGETHKETLFKFVEIALKYYGDKGMISNHTLPISLAKDNLKTGLLKFPGKIAIDKSGTHFAVSNTGNHNILLFDDTG-IVYS 795
S+EY A + + + L Q++ + +L VPEF + EWLNT + +S +L K+ VLDFFTYCCINC+H+LP LH LE ++ +DGL +IGVHSAKFPNEKV+DNI SAVLRY+I+HP++ND +A LW + + CWPT VI+ P G L L+GE HK+ LF + IALKYY D+G I ++ + I L KD+L L FPGK+ +D+ +++TG+H IL+ G I YS
Sbjct: 20 SLEYALLDAVTQQEKDSLVYQYLQKVDGWEQDLSVPEFPEGLEWLNTEEPISVYKDLCGKIVVLDFFTYCCINCIHLLPDLHALEHTYSDKDGLLIIGVHSAKFPNEKVLDNIKSAVLRYNITHPMVNDADASLWQELEVSCWPTLVILGPRGNMLFSLIGEGHKDKLFLYTSIALKYYKDRGQIRDNKIGIKLYKDSLPPSPLLFPGKVTVDQVTDRLVIADTGHHRILVVWKNGQIQYS 260 The following BLAST results are available for this feature:
BLAST of TCONS_00061102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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