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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061086 ID=TCONS_00061086|Name=TCONS_00061086|organism=Clytia hemisphaerica|type=transcript|length=827bp
TATTTCTACAGTGCAACTTCAACAAATAGTCCAAGAAAACATCCTTTCAT
AGAAGATGACATTGCGTGTTTTACTTTTGATGATATTTTACTACTTTCAA
GgaTTATCATCACGAGAGATTTACGTTTCACAGAACGAAGCAAGTGAAGA
TATCAAAACATGCGGCAAACAAACACATCCATGTCGCACCATTTCTTACG
CTATCTCAATATCCAAACATAACGATACCATCCTTTTAGATGCTCAATAC
ACCtatattcaaaataaatctcTGGTTGTTGACAAAACCCTATCGTTTAC
CTCATTTCCAGTATTAGATAACAAAAAAGCCGTTGTAAAGTTCTCCGAAT
CTCTTCGTGATAACTTCCTCTTCGATATTGTTTGCAATATCACCTTAAAC
AATCTCTCCATCGTCTATGATGCCAAGTATTGGACACCGTTTCAAATCTT
CCAGTTTAACAATGAATCTATGATGAAAGTGAATGGCTGTACTCTAAATC
TTAAAACTGAATATCGTTTCACGGAATTGTTAAACGTTTTCGACTTTTTC
ACGTccgttattttttataagacaaCATTTTTGAATTGCGGTCGGATATC
GAAGTTAGGTCTTATAGACGTGACTCGAAACGTGTCAACAACTtcttcaa
agatttttaaagcAGCGAACGCTCATGGAAACACTTTCAAAGCTTCCAAC
GTTCAGAAATCAATCACATTCATTGAATGCCTCTTTGAAAACAGTATTCT
TGATTTTGGATATCTTGACCACCGTGATACAGTTCATTTAAAATTGGTCG
CGATTAGGTCGACTTTCATAAACTCTG Run BLAST on NCBI protein sequence of TCONS_00061086-protein >TCONS_00061086-protein ID=TCONS_00061086-protein|Name=TCONS_00061086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MTLRVLLLMIFYYFQGLSSREIYVSQNEASEDIKTCGKQTHPCRTISYAI
SISKHNDTILLDAQYTYIQNKSLVVDKTLSFTSFPVLDNKKAVVKFSESL
RDNFLFDIVCNITLNNLSIVYDAKYWTPFQIFQFNNESMMKVNGCTLNLK
TEYRFTELLNVFDFFTSVIFYKTTFLNCGRISKLGLIDVTRNVSTTSSKI
FKAANAHGNTFKASNVQKSITFIECLFENSILDFGYLDHRDTVHLKLVAI
RSTFINS Run BLAST on NCBI transcript from alignment at scaffold_354:580462..581681+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061086 ID=TCONS_00061086|Name=TCONS_00061086|organism=Clytia hemisphaerica|type=transcript|length=1220bp|location=Sequence derived from alignment at scaffold_354:580462..581681+ (Clytia hemisphaerica)
TATTTCTACAGTGCAACTTCAACAAATAGTCCAAGAAAACATCCTTTCAT
AGAAGATGACATTGCGTGTTTTACTTTTGATGATATTTTACTACTTTCAA
GGTAATATACTTATTTTCTGTCATATTTTGTCATTTCTTCGTTCACTACT
TCTGGGTTTCCTTTTGAAGCGTGGGGGAGGCAAATCTTTATTTTACAGAC
AGAAATCCAAGCACGAAAAATTTATCGGATAAACTCCCCTTTATTActac
tttatttttttaacgacttgaaatttttcttcttttagtttGTTCTCCTG
TTGAAAAAGCCAACTTTTGAGCGTTGACTGAACATTGTGTCCTATGTACC
TCCTCTCTCCACGtcgttgtttttgtttttctgctaAGCTTTCCATTGTC
TTAGACTTGACCGATTTACCTGGTTCTCAAACTGTTGTCCcgcaaaaaca
aattaaattggcatCAACGCtcaagtttatttttatttttataggaTTAT
CATCACGAGAGATTTACGTTTCACAGAACGAAGCAAGTGAAGATATCAAA
ACATGCGGCAAACAAACACATCCATGTCGCACCATTTCTTACGCTATCTC
AATATCCAAACATAACGATACCATCCTTTTAGATGCTCAATACACCtata
ttcaaaataaatctcTGGTTGTTGACAAAACCCTATCGTTTACCTCATTT
CCAGTATTAGATAACAAAAAAGCCGTTGTAAAGTTCTCCGAATCTCTTCG
TGATAACTTCCTCTTCGATATTGTTTGCAATATCACCTTAAACAATCTCT
CCATCGTCTATGATGCCAAGTATTGGACACCGTTTCAAATCTTCCAGTTT
AACAATGAATCTATGATGAAAGTGAATGGCTGTACTCTAAATCTTAAAAC
TGAATATCGTTTCACGGAATTGTTAAACGTTTTCGACTTTTTCACGTccg
ttattttttataagacaaCATTTTTGAATTGCGGTCGGATATCGAAGTTA
GGTCTTATAGACGTGACTCGAAACGTGTCAACAACTtcttcaaagatttt
taaagcAGCGAACGCTCATGGAAACACTTTCAAAGCTTCCAACGTTCAGA
AATCAATCACATTCATTGAATGCCTCTTTGAAAACAGTATTCTTGATTTT
GGATATCTTGACCACCGTGATACAGTTCATTTAAAATTGGTCGCGATTAG
GTCGACTTTCATAAACTCTG Coding sequence (CDS) from alignment at scaffold_354:580462..581681+ >TCONS_00061086 ID=TCONS_00061086|Name=TCONS_00061086|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_354:580462..581681+ (Clytia hemisphaerica)
ATGACATTGCGTGTTTTACTTTTGATGATATTTTACTACTTTCAAGgaTT
ATCATCACGAGAGATTTACGTTTCACAGAACGAAGCAAGTGAAGATATCA
AAACATGCGGCAAACAAACACATCCATGTCGCACCATTTCTTACGCTATC
TCAATATCCAAACATAACGATACCATCCTTTTAGATGCTCAATACACCta
tattcaaaataaatctcTGGTTGTTGACAAAACCCTATCGTTTACCTCAT
TTCCAGTATTAGATAACAAAAAAGCCGTTGTAAAGTTCTCCGAATCTCTT
CGTGATAACTTCCTCTTCGATATTGTTTGCAATATCACCTTAAACAATCT
CTCCATCGTCTATGATGCCAAGTATTGGACACCGTTTCAAATCTTCCAGT
TTAACAATGAATCTATGATGAAAGTGAATGGCTGTACTCTAAATCTTAAA
ACTGAATATCGTTTCACGGAATTGTTAAACGTTTTCGACTTTTTCACGTc
cgttattttttataagacaaCATTTTTGAATTGCGGTCGGATATCGAAGT
TAGGTCTTATAGACGTGACTCGAAACGTGTCAACAACTtcttcaaagatt
tttaaagcAGCGAACGCTCATGGAAACACTTTCAAAGCTTCCAACGTTCA
GAAATCAATCACATTCATTGAATGCCTCTTTGAAAACAGTATTCTTGATT
TTGGATATCTTGACCACCGTGATACAGTTCATTTAAAATTGGTCGCGATT
AGGTCGACTTTCATAAACTCTATGACATTGCGTGTTTTACTTTTGATGAT
ATTTTACTACTTTCAAGgaTTATCATCACGAGAGATTTACGTTTCACAGA
ACGAAGCAAGTGAAGATATCAAAACATGCGGCAAACAAACACATCCATGT
CGCACCATTTCTTACGCTATCTCAATATCCAAACATAACGATACCATCCT
TTTAGATGCTCAATACACCtatattcaaaataaatctcTGGTTGTTGACA
AAACCCTATCGTTTACCTCATTTCCAGTATTAGATAACAAAAAAGCCGTT
GTAAAGTTCTCCGAATCTCTTCGTGATAACTTCCTCTTCGATATTGTTTG
CAATATCACCTTAAACAATCTCTCCATCGTCTATGATGCCAAGTATTGGA
CACCGTTTCAAATCTTCCAGTTTAACAATGAATCTATGATGAAAGTGAAT
GGCTGTACTCTAAATCTTAAAACTGAATATCGTTTCACGGAATTGTTAAA
CGTTTTCGACTTTTTCACGTccgttattttttataagacaaCATTTTTGA
ATTGCGGTCGGATATCGAAGTTAGGTCTTATAGACGTGACTCGAAACGTG
TCAACAACTtcttcaaagatttttaaagcAGCGAACGCTCATGGAAACAC
TTTCAAAGCTTCCAACGTTCAGAAATCAATCACATTCATTGAATGCCTCT
TTGAAAACAGTATTCTTGATTTTGGATATCTTGACCACCGTGATACAGTT
CATTTAAAATTGGTCGCGATTAGGTCGACTTTCATAAACTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061086-exon-scaffold_354-1491911889:580462..580562 | TCONS_00061086-exon-scaffold_354-1491911889:580462..580562 | Clytia hemisphaerica | exon |
| TCONS_00061086-exon-scaffold_354-1510915933:580462..580562 | TCONS_00061086-exon-scaffold_354-1510915933:580462..580562 | Clytia hemisphaerica | exon |
| TCONS_00061086-exon-scaffold_354-1575043694:580462..580562 | TCONS_00061086-exon-scaffold_354-1575043694:580462..580562 | Clytia hemisphaerica | exon |
| TCONS_00061086-exon-scaffold_354-1491911889:580956..581681 | TCONS_00061086-exon-scaffold_354-1491911889:580956..581681 | Clytia hemisphaerica | exon |
| TCONS_00061086-exon-scaffold_354-1510915933:580956..581681 | TCONS_00061086-exon-scaffold_354-1510915933:580956..581681 | Clytia hemisphaerica | exon |
| TCONS_00061086-exon-scaffold_354-1575043694:580956..581681 | TCONS_00061086-exon-scaffold_354-1575043694:580956..581681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_354 | supercontig | scaffold_354:580462..581681 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012334 | Pectin_lyas_fold |
| IPR011050 | Pectin_lyase_fold/virulence |
Blast
The following BLAST results are available for this feature:
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