TCONS_00061084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061084
Unique NameTCONS_00061084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061084 ID=TCONS_00061084|Name=TCONS_00061084|organism=Clytia hemisphaerica|type=transcript|length=775bp
gggaaaATGTAGAAATaaattgtaacaaaataataaaataaaaaacatac
ttACGTACAAACTATTAACAAAAATGCAGTGTCAGCATTGTGATGCAATA
TTTGGTACAATGGAGGAATTACAAACACATCAGATTGTATCTTGTCCTGG
GATATTGTCCGATGAAGATAGTGTGATAGTTCAAGAGCAAAGAAAAGGTG
TACAAGTGATTTTCAAATGGCTTGAAGATCGGAACCTTCCAGACCAAACC
AAATCCATACATCTTCTCATCACAGGATCAgattcaaatatTGAATTAAA
GAAAGGGAATGGTAATTTCAAGTCTGAATGGAAGCAAATGCCACTTGGTA
CATTCTGTGGTCAATTGGTGATTGGAGATGAGATATTTGCAATCAATGAA
ATAAGAATCGAAAAAGCCACTGAGACAGTCTTCATTATAATCGATCAAGA
CGAGACGTATGATACAACTCTAACACGTGATCGACTCACTACTGAACCAG
GAGATTCCCAACAACAAGGTGATTCTCAAGCTGGCAATGCTTTGGTTAGT
TCTTCATTTTAGTTTAAACTTACCTTGGTTTTAAAGATCACTTACTCTCG
GGCGGCGAATAATTGGGTCTTTatgtttgttaaatatttttataattcct
GTCTCCATCGGACCTTTTAGAAAGCTCTCCCTTTTGTTGACCTTCAAAAA
ATACATTAATTCTTTTGCACTAACATTAACATGTGCCGCTGGTCAGAGTA
CCTTTTTCACctccatgagtcccag
Run BLAST on NCBI

transcript from alignment at scaffold_354:565494..578544+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061084 ID=TCONS_00061084|Name=TCONS_00061084|organism=Clytia hemisphaerica|type=transcript|length=13051bp|location=Sequence derived from alignment at scaffold_354:565494..578544+ (Clytia hemisphaerica)
gggaaaATGTAGAAATaaattgtaacaaaataataaaataaaaaacatac
ttACGTACAAACTATTAACAAAAATGCAGTGTCAGCATTGTGATGCAATA
TTTGGTACAATGGAGGAATTACAAACACATCAGATTGTATCTTGTCCTGG
GATATTGTCCGATGAAGATAGTGTGATAGTTCAAGAGCAAAGAAAAGGTA
CTGTAATTTACAAATACATGCATTCTATATTACATTTCACTAATGGCTGC
ACcctgaaaaaaatacaataaagaCTATAAAAAGCTAAGAGCTTCGTACA
TTTCTACGACAAAccctctcaaaaaaaattttaaaatcttatcTTTTTTC
GAACCAATCGCATGTGGCTGCGTCCCACGGAAGATGCTACAACTTCTAAG
GGTTAGCCCTCTACTATTGAGAAAAATACTGTTTTTCCATTCGCATGATG
TTGAATCACGGTTTAAATTTTCATACTAACAGTGTATTTTCTTGACCACT
GAAAGCCCTAATGCTTAATGCGTTGATGTCTTTACCTTGTAGGTGTACAA
GTGATTTTCAAATGGCTTGAAGATCGGAACCTTCCAGACCAAACCAAATC
CATACATCTTCTCATCACAGGATCAGTAGGTGTTTTCTCTaatttttata
attcttttttttaattttagctaACGTTTTTTCCACTACTAAGGCCAATC
TACCAATCTGCTCCTAAACATTTAATATGTCAAGTACTACAATgatggac
aaaatacttggcacaaaagggaaattcaccggggtgttttgaaaccacaa
tcgatttgtaagtgctctaaagtaggttcgaatgNNNNNNNNNNNNNNNN
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gaaaagggttatttttcacatttttggggttttctcctaattttagaccc
cccgcagagtagaaatcggcatttttaattttcaaagacaatgatggtca
aaatacttggcacaaaagggaaattcaccggggtgttttgaaaccacaat
cgatttgtaagtcctctaaagtaggttcgaatggtagagttttaactctg
agttttaacgctagacttaagacttaggaccttaggatctgaggatccaa
aagttcaaaaatggtccagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNcttcaattttcgaaaaattgtaaattagccaaaagtgccaatatat
tatgaccatTATTGTAGAATTTTTGTAATAGGCAGGAATATATAATGGAT
TTTGCTTGATATTGTATAACAGGATCAAGGACCTAATCAGCTGGATCAAG
TGTCTGACTCAAATATCTTCTTGTCCGACcggaaaatcataattttcaag
ctaaagcaacctgGAAATCGTTATTTCAAGCCTTGAGTGTCAGCTaccat
caaaaatattttgatttcttaACGAACATAAAACTTCTCCTGCACATAAT
AGAGATCTAGACAGCAGTTTAAGTTTGGAAGAAGTGATAATTCCGCTACA
CCAGCAGTATACCcttatttatgatttataaaGTCAGTTGCCAGCTGCCA
TgtgaagcccccccccctacgGTCACTAGGATTACAGCCATAAAAATGGT
GTATATAATTCAGTAGATTCctacctaattttttttctccatttttttag
gattcaaatatTGAATTAAAGAAAGGGAATGGTAATTTCAAGTCTGAATG
GAAGCAAATGCCACTTGGTACATTCTGTGGTCAATTGGTGATTGGAGATG
AGATATTTGCAATCAATGAAATAAGAATCGAAAAAGCCACTGAGACAGTC
TTCATTATAATCGATCAAGGTACCTGTTTGTTATTACCTTATAACACGAC
AATAAGTTAACACAAGCCTGCACaagctaaaaaaattaaaaccagccgta
atgtctttattttgaaaagctTAAAAATTCGTATTTAAGTTGGTTGCGTG
TTAAAGTCCACATGTTTTAAGGgtgcactcttttttttagTACCATGTGG
AAAGCATACCAGCATAAATAGACTATAATTCCCCAGAGAATTGTTTCCAC
ATGATAACAAGAAACCTTATTTTCAAGGCGGTTGAATACTACTTACATTC
ATGTATAAAGTTATGTGAaaatcagtaaatttttgttgaatctctcctgt
tcttagctttttttttgcaatttaagCCTCAAATTTTTCTTACCCTGTTC
TTATCTTATGGAAAGATATATCAGAATTAGAGTCAAGTTGCACTGTTACT
GATACCATTTTCTTACCCCTTTGGTCGGATGCTCTTGAATTTGGTGCTCA
AATTGGAAAAATCCCAATCCAAGGTTTAATAAATTTAAATATTGTACCAT
CATTTTCCATGGAGTATTTATGCCAATTAATTTCTTAATTAGACGAGACG
TATGATACAACTCTAACACGTGATCGACTCACTACTGAACCAGGAGATTC
CCAACAACAAGGTATGGTTACGATCAAGTACTGATGTCACGATATTTATA
TTCTCTTTGTAAACTACAGTgatcaaagttcttccgtctcagacggattt
ccgtctcacagaaatttttgtcaaagttttccgCCTCAGTTAGAAATGGT
TATTTAGCAAGAAATATTTATTCTCTAGAATAATTCCATCAGAAAGAAAT
CTCGTATTAAAACTGTGTTTATTGCTGATTTTACATTTTGGTTTTAGATA
GATATATAGCGCTGTATAATAggtattttaagaacattctgagttgtttt
aattaacaaattttagtgCCTTTCTAGCCAATCTAGGGGGTAAAAAAGTC
TGAAGATTTTCTGGCCCTGGGCCAGTCACTGTATACCAAGATATCTCTTT
CAAGAAATTTTCCGTCTAACAGAAAAAAAATGGAACTAAACCCGTTGACA
AATTGCAAGTTCGTGGCAGGGACGGTTACTCTTTGCTAAGTAATTTCAGA
TTCTGGCTGACTAAGGACGACGGTAAACAGCGTATTTTAGTCTTCAATTG
TAAGGGTCGAATATAAGGgtttattaaaaatcattttaGTCACTCTTCCA
TTGTCTTTGCAAAATCAGCAAACAGCTCCATATAGATTAGgctttgcttt
ctgatgattttgatggcgctgaGTCCAGTAAAGTAAAACTAGAGGACATt
gacatcttgaattttttcacattttgttttcgaaaattgtAAGAAAACAT
CAAGACAATTAAATGTATTCTAAAACCCcatcaaagtttatgaaacttta
accttttcagcccggcggacgagtatagtcgtcgagcatacgttccggcg
gacgagtatatacgtttttttgttatagtgatcttctaagctatatttct
cccattggcttctttgctagccgtagaagtaaagagaaacggaaagtaga
ggttctaagctttcttttgatataNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGAGT
TATGATcaaataactgaacatgtctattttctgaaaaaatgttgcgcgct
gacagcgtgaaaatttaaaaagttgcgcgctggaaaggttaataaaaaca
taaaaatgcctcTAACATTTGAGAAAAATGGTCCACTGGTCgtggttttc
tgtttgtttttctccaaaaaggagaatggatttgctaccacctcaagcaa
agccaaatAATGGAGTCTGCCAAATTACGCCGGGCTacagcgccatccag
tctatcaaaaagttttaagtGGCATCCGGGCTACATATAGATCAGCTAAG
TTTGTCTTTCCTCTATGCAATGAAAAAcgatatttttggacctacctccg
gtgtagtttgattcgcaaacctctatagatatatctcCTATATAGGTTTG
CTTAATAGTGTACGGCTTGCCTTCCCGCTATGGTGGCTCTTATTGTGGCc
gattttaccttttttggcgAGTTACGGAAAGGGACGAGTTTTANTACGGA
AAGGGACGAGTTTTATATGGCGAgtcagaaaataataaaaataaaaaaag
aaacaaagtcACAAAAATATATTCTGTCTTCACTTTGACTTTATATAACA
GTAAGAGAGTCTGGATAAAAAATGTTATGAAAAAGTGTAAAACAGTGTAA
TGAAAAAGCCTAGTTATTTGAGTTCTATAAACATCAGCTTTCTGACTTCA
ATATTACATTGTACAGGAAGtcagagaaaaaatcaaaacaaagaatcctt
taaaaacgaaagcactctgttctaaaaaaaataacttaataaatgaaaaa
attctcttGCATCCCTATAATAGTATTGAATAAGGTTTTTTTCTCTTGTT
GAGGAaaagaaactataaaaaaattgaaagaagaaaCCATTCTAAGATGG
GTTTTGAGATCAGAGAAAGTTTGTACTTTGAAaccattaaaaatgaaaaa
aatattatacaaaatttatttagttTCCTTCCAATTTAAAGATGTATCAC
CAAGACACCTAAGAACTATCAACTGAAGTCATCTCCTCTAATACTTGAGC
CTGACTGAGTCTGCCGGGTCTGCGAAAAGCCAAAACAAAAACTCAATCTC
TCCAAAGTTCTCAAAACCAAcaaaaatatgagaaatattcCATCACAGCT
GCACGGTTTATGCTTTGCGGAATGATATACCAACAAGGCCAAACTAGAGG
TATAAACTCTTGTCCAGAGTCAGTTTTCAATGGCTAAAACttgagaaaaa
agtaaaaaaattgactttttaaactcttttaaagaagctttgaaaactta
agaaATCTTCCAGAAAACCAAAGAATCTTGCTCTGTAACAAAGAACAAAG
TAAATTTGACATACCTGTTGCTTTATTGTAGGCTCCAAAGTGACAATAGT
ACTTGttgaaacttgaaaaaatttcaagatctTGTAACCAAAACAtcagc
caaaatcaaaacaaacaaaaaatcttaatttgaaTCATTATCTCATGCCA
CTGAGACACAACTTTCCCTTAATGCATTCCATAGATACAACTGAACATAA
ATTTACACATACAAAGCTTTTAACTCTAAAATTATAACTTCGacttccaa
aaaccaaaataaactctaaaaaagagaaattctcTACTTCGCTtcggcag
ccatgttgaattcAAAATGTGAACAATCAAGCGAGCCTGTATCAAACTAA
CACGTGCATTTTTAATATCGGTatcaataatgaaaatatttgttattagt
ttggtacaggctatcAAAAATCTAAACCGTAACGGGGAGAGTTCCTTCAC
AAATTCATCATCATAagcactcgccagctaaaataGCTTGTTCGCCGAAA
TTCGGCGAAAAGCGGCATATTCTGGGAAAGAGGATCTACCGAGTATTAAg
cagcctctataagaaacttttatcgctagaggatgagcagaagcctagtg
CACTTAAGGATACGTTTTCAAGGCTTCCCAGTGGTGGAAGGGTTAAAATT
AGCAAAGATGNtcgctagaggatgagcagaagcctacctccggtggaggt
cctatggattaacctctgtctgttcgttcgtccgtccgtccgtccgtccg
tccgttcgtctgttaccagcttttctcgagattggctcattagttttttc
tgattttttgcaaaatggcaattgccaaaatgtgacggagcccgattttc
gaaaaaaaatcatttccggccgaaaatgccggaaatatgccggaaaaacc
ggttttttggcatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgattttttgcaca
aagatgcgtattagcaatgcccaaaacttggccgagtccgatttttgaga
aaaattcttttccggccgaaaatgccggaaatcgccggacttttttctta
taattgcttgtttttcacacaaaaacattgccaatagcaatgtccacgat
caagcatggttcaattgtcaataaaactgatttttgaagccggaactttc
caaaaatcgccggaacagccgattttcgccagaaaaacggtatttcttga
atttctcgagctgtactttatattcttctatgaaattttgcacactgatg
taaaatgacaatacctaaaaagtgacggagcccgattttcgaaaaacatt
tttttccggccgaaaatgccgtaaatcgccgtttttctggattttcattg
gactttttccttacaattggttgttttttcattcaaaaacattattagta
gtaatgcccaccatcaagcatgtttcaattttcaataaaattgattattg
aagccggagctatttaaaaatcgccggaacaacctatttttgccggaaag
acagtatttcttggatttctcgagctgtactttatatttttttatgaaat
tttgcacactgacgcaatatgacaatacctaatatgtgacggagcccgat
tttcgaaaaacatttttttccggccgaaaatgccggaaatatgccggaaa
aaccggttttttgacattttctcgaatttttatttttagtttttttctga
ttttttgcagaaagatgcgtattcgcaatgctcaaaacatggccgagttc
gatttttgagaaagattttttccggttgaaaattctggaaatcgccgttt
ttgcagattttcattggattttttccttatatttctatgttttccactca
aaaacattattgataacaatgctcaccatcaagcatgattcaattgtcaa
taaaactaatttttgcgaccagaactttctatttatctatttattttttc
cctacaacccttccctctccccctaccatcaatcaatgatgaatttcttg
cgttatgcattttcgctaaacgctatgttttctgactgNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNct
aaacgctatgttttctgactgatttttttcatttttctccttgcattgct
atctaactttcatcatcaggtaggtccattcagcatctagcttattgaat
ttgaattcacattgtaatatgtaatatatTTTTCGGATTATCCGGTAAGC
GAAAGAAGTAGAATTGTTAAGCATTGTTCTTGTTTCTTTTACAGGTGATT
CTCAAGCTGGCAATGCTTTGGTTAGTTCTTCATTTTAGTTTAAACTTACC
TTGGTTTTAAAGATCACTTACTCTCGGGCGGCGAATAATTGGGTCTTTat
gtttgttaaatatttttataattcctGTCTCCATCGGACCTTTTAGAAAG
CTCTCCCTTTTGTTGACCTTCAAAAAATACATTAATTCTTTTGCACTAAC
ATTAACATGTGCCGCTGGTCAGAGTACCTTTTTCACctccatgagtccca
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038332XLOC_038332Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061084-exon-scaffold_354-1491911889:565494..565690TCONS_00061084-exon-scaffold_354-1491911889:565494..565690Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1510915933:565494..565690TCONS_00061084-exon-scaffold_354-1510915933:565494..565690Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1575043694:565494..565690TCONS_00061084-exon-scaffold_354-1575043694:565494..565690Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1491911889:566036..566118TCONS_00061084-exon-scaffold_354-1491911889:566036..566118Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1510915933:566036..566118TCONS_00061084-exon-scaffold_354-1510915933:566036..566118Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1575043694:566036..566118TCONS_00061084-exon-scaffold_354-1575043694:566036..566118Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1491911889:571344..571512TCONS_00061084-exon-scaffold_354-1491911889:571344..571512Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1510915933:571344..571512TCONS_00061084-exon-scaffold_354-1510915933:571344..571512Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1575043694:571344..571512TCONS_00061084-exon-scaffold_354-1575043694:571344..571512Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1491911889:572086..572154TCONS_00061084-exon-scaffold_354-1491911889:572086..572154Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1510915933:572086..572154TCONS_00061084-exon-scaffold_354-1510915933:572086..572154Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1575043694:572086..572154TCONS_00061084-exon-scaffold_354-1575043694:572086..572154Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1491911889:578288..578544TCONS_00061084-exon-scaffold_354-1491911889:578288..578544Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1510915933:578288..578544TCONS_00061084-exon-scaffold_354-1510915933:578288..578544Clytia hemisphaericaexon
TCONS_00061084-exon-scaffold_354-1575043694:578288..578544TCONS_00061084-exon-scaffold_354-1575043694:578288..578544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_354supercontigscaffold_354:565494..578544 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76671	5.78016	3.65659	3.04677	8.70543	8.8699	8.8025	12.8018	7.16755	10.7402	6.04767	3.02051	4.56664	1.39329	1.43702	1.93422	3.0717	3.95429	1.28006	2.36818	5.81605	6.73975	2.43934	4.67062	4.96601	5.36048	14.1561	12.7168	4.05307	2.28007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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