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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061068 ID=TCONS_00061068|Name=TCONS_00061068|organism=Clytia hemisphaerica|type=transcript|length=2093bpRun BLAST on NCBI protein sequence of TCONS_00061068-protein >TCONS_00061068-protein ID=TCONS_00061068-protein|Name=TCONS_00061068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp MAKSPQTMAIEISTLFNKTRFKPSSAASYLVFFFYMPLGIVLFLLRILLSRun BLAST on NCBI transcript from alignment at scaffold_354:425038..434038+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061068 ID=TCONS_00061068|Name=TCONS_00061068|organism=Clytia hemisphaerica|type=transcript|length=9001bp|location=Sequence derived from alignment at scaffold_354:425038..434038+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:425038..434038+ >TCONS_00061068 ID=TCONS_00061068|Name=TCONS_00061068|organism=Clytia hemisphaerica|type=CDS|length=17892bp|location=Sequence derived from alignment at scaffold_354:425038..434038+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061068 vs. Swiss-Prot (Human)
Match: AUP1 (Ancient ubiquitous protein 1 OS=Homo sapiens GN=AUP1 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.887e-21 Identity = 81/275 (29.45%), Postives = 129/275 (46.91%), Query Frame = 1
Query: 535 EEGTTNGNVALMKFSSKELKNNESVPLQPMVLTAYRSWFTPVHLNCLESTLVEDLLWCLYTPFTMYTICFL-PVREIPNEEGLDDFAKSLQKDMAYVLDKKVTNFTAADKNEYIKRLKDEEKRREQQRLSNTNPFPEQSYRAPPXXXXXXXXXXKAQLEALKMIEQIKNVLPQVPVKIIKNELESTKNVDLTIAHLLDGSIQYTPLSDEDQQKENKDIELKRKSIIQXXXXXXXXXXXXTTPTSWKDRQLSFQEKKKIMIENARIKYLELHPEYA 1356
EE TNG L++FSS + V QP+ L R V + +++ V +LLW L+ PFT+Y + +L PV E ++FA +Q+ +A L + T T ADK E++KR QR P QS + ++ + +++K VLP VP+ +I+ +L T VDLTI +LL+G++ + P ED K + + S + + + T S RQ S QE+K+ + E AR ++ E + A
Sbjct: 227 EEEATNGREGLLRFSSWPFSIQDVV--QPLTLQVQRPL---VSVTVSDASWVSELLWSLFVPFTVYQVRWLRPVHRQLGEAN-EEFALRVQQLVAKELGQTGTRLTPADKAEHMKR----------QRHPRLRPQSAQSS-------FPPSPGPSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLEGAVAFMP---EDITKGTQSLPTASASKFPSSGPVTPQPTALTFAKSSWARQESLQERKQALYEYARRRFTERRAQEA 475 The following BLAST results are available for this feature:
BLAST of TCONS_00061068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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