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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061065 ID=TCONS_00061065|Name=TCONS_00061065|organism=Clytia hemisphaerica|type=transcript|length=2864bpRun BLAST on NCBI protein sequence of TCONS_00061065-protein >TCONS_00061065-protein ID=TCONS_00061065-protein|Name=TCONS_00061065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp FMIFDTKKRRKEVKMATPGLSTPNRTTRKRRPMNVSPALNLSTSLLEVNDRun BLAST on NCBI transcript from alignment at scaffold_354:341541..373275+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061065 ID=TCONS_00061065|Name=TCONS_00061065|organism=Clytia hemisphaerica|type=transcript|length=31735bp|location=Sequence derived from alignment at scaffold_354:341541..373275+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_354:341541..373275+ >TCONS_00061065 ID=TCONS_00061065|Name=TCONS_00061065|organism=Clytia hemisphaerica|type=CDS|length=44340bp|location=Sequence derived from alignment at scaffold_354:341541..373275+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061065 vs. Swiss-Prot (Human)
Match: CND2 (Condensin complex subunit 2 OS=Homo sapiens GN=NCAPH PE=1 SV=3) HSP 1 Score: 288.115 bits (736), Expect = 1.159e-83 Identity = 223/675 (33.04%), Postives = 332/675 (49.19%), Query Frame = 1
Query: 274 ISLSHAGVTNAQLKEHYANCIKLSSENKINVKNAFGLHLIDYMKDLLKESNKDENATNFQVASCTLDAGVKIYAYRVDSVHSEAYKVLGSLGRAVNNPDEPEDGEQPDSQEGGSSQPVXXXXXXXXXXXXIETNMKNINCEQLDIDYEVDPFFTKISAACDEAGTTSLL--SFHLRSHXXXXXXXXXXXXXXXXIPNATVGETTNDDDM--VDLSSLRDMYNNLPLTKM----EICPQFSNFNFTGWDKDSQDIGGNIHLPDDSFDGDNIHRFDENAPVVSEAMESFDTGGCGGMDDFSDNDERNDALDDLQFGHQGAAIPDNGMSSKDQLF----GTTGTSHIALSLNPSEYSYFSQDHMKMWAGPLHWKVKAKSKDKTISTTNASKMSTKKTQIRIDFDEEIDLKKHFTTGRGATHMKAVAMDNKQAAQMSVLPADLHYETESLFKLSTRTFVSIKRQSDAVDLKNEGDEW---YNYDNKNDREGFCPALXXXXXXXXXXX------------XXXXXXXXITLDEGGLNNDDQ--QITTFGGAGLVAPPNKVRVLDINYAKAAKRIDIKKLKGTMWKMLTAXXXXXXXXXXXXXXXXXXIQETESEKDQPKDVSGSYTFKSMYDALPNKVSTNMSKNLSAPIAFVCLLYLANEKNLKLTGCEDMANIKIESG 2211
IS + TN Q+ EHY+ CIKLS+ENKI KNAFGLHLID+M ++LK+ KD TNF+VA+ TLDA KIYA RVD+VH++ Y+VLG LG+ + +E E S + A K KK+ +TIE N+ N+N + D E+DP F K +A+ DE T + + H + + + + GE ++ V+++ L+ PL + +ICP + F FT WD ++ + + + D F N FD NA V F G G DDF NDE + + P S ++++ G T LS+ P EYSYFS M MWAGP HW+ + + K S + K STKK +++ID +F + AT + ++N Q + + LP D +Y ++L +L + + + + ++ E E Y+Y+N ND FCP L D+ D D C T + G + Q ITT+G + LVA P KV ++I+YAK AK++D+KKLK +MW +LTA + + + N+ + E V+ + L + M++NLS P+AF CLL+LANEKNLKL G ED++++ + G
Sbjct: 95 ISATIPKFTNTQITEHYSTCIKLSTENKITTKNAFGLHLIDFMSEILKQ--KDTEPTNFKVAAGTLDASTKIYAVRVDAVHADVYRVLGGLGKDAPSLEEVEGHVADGSATEMGTTKKAVKPKKKHLHRTIEQNINNLNVSEADRKCEIDPMFQKTAASFDECSTAGVFLSTLHCQDY-------RSELLFPSDVQTLSTGEPLELPELGCVEMTDLK-----APLQQCAEDRQICPSLAGFQFTQWDSETHNESVSALV--DKFK-KNDQVFDINAEVDESDCGDFPDGSLG--DDFDANDEPDHTAVGDHEEFRSWKEPCQVQSCQEEMISLGDGDIRTMCPLLSMKPGEYSYFSPRTMSMWAGPDHWRFRPRRKQDAPSQSENKKKSTKKDFEIDF-EDDIDFDVYFRKTKAATILTKSTLEN-QNWRATTLPTDFNYNVDTLVQLHLKPGTRLLKMAQGHRVETEHYEEIEDYDYNNPNDTSNFCPGLQAADSDDEDLDDLFVGPVGNSDLSPYPCHPPKTAQQNGDTPEAQGLDITTYGESNLVAEPQKVNKIEIHYAKTAKKMDMKKLKQSMWSLLTALSGKEADAEANHREAGKEAALAE--------VADEKMLSGLTKDLQRSLPPVMAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVRQG 740 The following BLAST results are available for this feature:
BLAST of TCONS_00061065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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